Wall clock time and date at job start Tue Mar 31 2020 11:08:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86800 * 120.00182 * 2 1 4 4 H 1.48499 * 109.47172 * 179.97438 * 3 2 1 5 5 H 1.48499 * 109.47017 * 299.99759 * 3 2 1 6 6 H 1.48500 * 109.47026 * 59.99522 * 3 2 1 7 7 C 1.37884 * 119.99812 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99569 * 180.02562 * 7 2 1 9 9 C 1.50696 * 120.00233 * 0.02562 * 7 2 1 10 10 C 1.52995 * 109.47182 * 179.97438 * 9 7 2 11 11 C 1.53006 * 109.47234 * 180.02562 * 10 9 7 12 12 H 1.09001 * 109.47002 * 55.00002 * 11 10 9 13 13 N 1.46898 * 109.47006 * 295.00220 * 11 10 9 14 14 C 1.46901 * 110.99830 * 154.99481 * 13 11 10 15 15 C 1.53000 * 109.47220 * 179.97438 * 14 13 11 16 16 H 1.09003 * 109.47180 * 55.00655 * 15 14 13 17 17 C 1.52997 * 109.47240 * 295.00423 * 15 14 13 18 18 C 1.53000 * 109.47240 * 180.02562 * 17 15 14 19 19 C 1.52997 * 109.47312 * 59.99972 * 18 17 15 20 20 C 1.52997 * 109.46991 * 300.00180 * 19 18 17 21 21 C 1.52997 * 109.47312 * 175.00395 * 15 14 13 22 22 H 1.09001 * 109.47679 * 59.99867 * 21 15 14 23 23 O 1.42908 * 109.47163 * 299.99990 * 21 15 14 24 24 C 1.50697 * 109.47239 * 174.99933 * 11 10 9 25 25 C 1.38244 * 119.99609 * 79.73078 * 24 11 10 26 26 C 1.38231 * 119.99550 * 179.80907 * 25 24 11 27 27 C 1.38234 * 120.00240 * 0.39728 * 26 25 24 28 28 C 1.38236 * 120.00131 * 359.85600 * 27 26 25 29 29 C 1.38232 * 120.00191 * 260.00377 * 24 11 10 30 30 H 0.96997 * 119.99721 * 0.02562 * 1 2 3 31 31 H 1.09006 * 109.46701 * 59.99735 * 9 7 2 32 32 H 1.09003 * 109.47315 * 300.00756 * 9 7 2 33 33 H 1.09007 * 109.46945 * 60.00611 * 10 9 7 34 34 H 1.08995 * 109.47339 * 299.99909 * 10 9 7 35 35 H 1.00900 * 111.00405 * 31.04805 * 13 11 10 36 36 H 1.09002 * 109.47499 * 300.00154 * 14 13 11 37 37 H 1.09008 * 109.47107 * 60.00023 * 14 13 11 38 38 H 1.09003 * 109.47224 * 300.00206 * 17 15 14 39 39 H 1.08997 * 109.47209 * 59.99787 * 17 15 14 40 40 H 1.08994 * 109.47149 * 299.99607 * 18 17 15 41 41 H 1.09004 * 109.47152 * 180.02562 * 18 17 15 42 42 H 1.08996 * 109.47039 * 180.02562 * 19 18 17 43 43 H 1.08996 * 109.47085 * 60.00232 * 19 18 17 44 44 H 1.09003 * 109.47224 * 299.99570 * 20 19 18 45 45 H 1.08997 * 109.47209 * 179.97438 * 20 19 18 46 46 H 0.96700 * 113.99689 * 179.97438 * 23 21 15 47 47 H 1.07997 * 119.99876 * 359.97438 * 25 24 11 48 48 H 1.08000 * 119.99463 * 180.22542 * 26 25 24 49 49 H 1.07996 * 120.00197 * 179.83246 * 27 26 25 50 50 H 1.07995 * 119.99990 * 179.97438 * 28 27 26 51 51 H 1.08000 * 120.00044 * 359.97438 * 29 24 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3463 0.0006 5 1 1.8905 2.3964 -1.2125 6 1 1.8904 2.3964 1.2124 7 6 2.0045 -1.1941 0.0005 8 1 3.0846 -1.1941 0.0010 9 6 1.2511 -2.4992 0.0005 10 6 2.2453 -3.6621 0.0005 11 6 1.4803 -4.9872 -0.0001 12 1 0.7884 -5.0069 -0.8422 13 7 0.7281 -5.1189 1.2548 14 6 -0.4305 -6.0056 1.0835 15 6 -1.1869 -6.1183 2.4086 16 1 -1.4510 -5.1216 2.7622 17 6 -0.2987 -6.8086 3.4457 18 6 -1.0553 -6.9219 4.7707 19 6 -2.3289 -7.7436 4.5622 20 6 -3.2171 -7.0534 3.5251 21 6 -2.4608 -6.9398 2.2006 22 1 -2.1968 -7.9365 1.8470 23 8 -3.2904 -6.2951 1.2319 24 6 2.4549 -6.1298 -0.1240 25 6 3.1524 -6.5668 0.9868 26 6 4.0435 -7.6175 0.8740 27 6 4.2432 -8.2260 -0.3511 28 6 3.5496 -7.7857 -1.4628 29 6 2.6556 -6.7374 -1.3493 30 1 -0.4849 0.8400 -0.0004 31 1 0.6247 -2.5571 -0.8897 32 1 0.6239 -2.5567 0.8902 33 1 2.8719 -3.6044 0.8906 34 1 2.8719 -3.6044 -0.8894 35 1 0.4435 -4.2154 1.6024 36 1 -1.0924 -5.5955 0.3207 37 1 -0.0892 -6.9939 0.7751 38 1 -0.0346 -7.8053 3.0922 39 1 0.6088 -6.2234 3.5940 40 1 -1.3197 -5.9254 5.1245 41 1 -0.4224 -7.4132 5.5097 42 1 -2.8681 -7.8239 5.5060 43 1 -2.0644 -8.7401 4.2085 44 1 -3.4816 -6.0569 3.8788 45 1 -4.1242 -7.6391 3.3761 46 1 -4.1174 -6.7619 1.0493 47 1 2.9991 -6.0889 1.9431 48 1 4.5857 -7.9612 1.7425 49 1 4.9414 -9.0451 -0.4397 50 1 3.7059 -8.2608 -2.4199 51 1 2.1136 -6.3934 -2.2178 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000577955671.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:08:10 Heat of formation + Delta-G solvation = -80.884941 kcal Electronic energy + Delta-G solvation = -27196.528051 eV Core-core repulsion = 23671.933991 eV Total energy + Delta-G solvation = -3524.594060 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 317.210 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -40.62958 -39.99230 -37.78146 -36.47653 -35.35897 -33.86270 -31.89094 -31.66152 -31.01108 -30.38744 -28.02137 -25.64443 -24.89267 -23.37531 -23.30246 -22.55930 -21.93309 -21.09388 -20.64835 -18.61947 -18.19360 -17.54681 -16.81231 -16.56983 -16.45082 -16.21248 -15.74491 -15.54734 -15.09088 -15.04701 -14.73492 -14.54382 -14.39222 -14.14936 -13.89800 -13.81095 -13.69439 -13.56395 -13.31759 -12.97784 -12.87690 -12.66450 -12.51515 -12.32326 -12.23600 -12.01565 -11.89333 -11.83409 -11.63229 -11.54973 -11.38831 -11.28241 -11.11202 -10.99955 -10.63459 -10.56786 -9.69465 -9.46867 -9.36532 -8.21379 -6.32556 0.56422 0.64439 1.38280 1.38486 1.52087 2.39559 2.98307 3.11406 3.18937 3.33636 3.69567 3.84327 3.95542 4.05012 4.13916 4.18317 4.27891 4.32400 4.33079 4.39399 4.42344 4.44771 4.50677 4.53052 4.60010 4.66537 4.72840 4.77543 4.83554 4.88332 4.99707 5.03782 5.07457 5.12141 5.20965 5.23465 5.24566 5.27297 5.30843 5.35833 5.48360 5.50175 5.56996 5.66093 5.68639 5.73671 5.80953 5.83027 6.21136 6.22089 6.26418 6.40298 6.83527 6.93196 7.36737 8.90153 Molecular weight = 317.21amu Principal moments of inertia in cm(-1) A = 0.007855 B = 0.004330 C = 0.003120 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3563.904188 B = 6464.724456 C = 8972.286784 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C 0.002 3.998 3 Si 0.963 3.037 4 H -0.263 1.263 5 H -0.278 1.278 6 H -0.277 1.277 7 C -0.541 4.541 8 H 0.058 0.942 9 C 0.031 3.969 10 C -0.090 4.090 11 C 0.134 3.866 12 H 0.028 0.972 13 N -0.672 5.672 14 C 0.078 3.922 15 C -0.073 4.073 16 H 0.050 0.950 17 C -0.095 4.095 18 C -0.123 4.123 19 C -0.112 4.112 20 C -0.145 4.145 21 C 0.111 3.889 22 H 0.064 0.936 23 O -0.589 6.589 24 C -0.077 4.077 25 C -0.098 4.098 26 C -0.129 4.129 27 C -0.128 4.128 28 C -0.126 4.126 29 C -0.138 4.138 30 H 0.263 0.737 31 H -0.019 1.019 32 H 0.000 1.000 33 H 0.058 0.942 34 H 0.050 0.950 35 H 0.339 0.661 36 H 0.010 0.990 37 H 0.067 0.933 38 H 0.066 0.934 39 H 0.067 0.933 40 H 0.051 0.949 41 H 0.076 0.924 42 H 0.075 0.925 43 H 0.072 0.928 44 H 0.055 0.945 45 H 0.082 0.918 46 H 0.391 0.609 47 H 0.122 0.878 48 H 0.140 0.860 49 H 0.145 0.855 50 H 0.140 0.860 51 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.856 -21.962 6.294 22.862 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.572 5.572 2 C -0.195 4.195 3 Si 0.788 3.212 4 H -0.187 1.187 5 H -0.204 1.204 6 H -0.202 1.202 7 C -0.579 4.579 8 H 0.076 0.924 9 C -0.006 4.006 10 C -0.128 4.128 11 C 0.024 3.976 12 H 0.046 0.954 13 N -0.304 5.304 14 C -0.051 4.051 15 C -0.092 4.092 16 H 0.068 0.932 17 C -0.132 4.132 18 C -0.160 4.160 19 C -0.150 4.150 20 C -0.183 4.183 21 C 0.052 3.948 22 H 0.082 0.918 23 O -0.397 6.397 24 C -0.077 4.077 25 C -0.116 4.116 26 C -0.146 4.146 27 C -0.146 4.146 28 C -0.144 4.144 29 C -0.156 4.156 30 H 0.072 0.928 31 H 0.000 1.000 32 H 0.019 0.981 33 H 0.077 0.923 34 H 0.069 0.931 35 H 0.159 0.841 36 H 0.028 0.972 37 H 0.086 0.914 38 H 0.084 0.916 39 H 0.086 0.914 40 H 0.070 0.930 41 H 0.094 0.906 42 H 0.094 0.906 43 H 0.091 0.909 44 H 0.073 0.927 45 H 0.101 0.899 46 H 0.240 0.760 47 H 0.140 0.860 48 H 0.158 0.842 49 H 0.163 0.837 50 H 0.158 0.842 51 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges -0.109 -21.914 6.548 22.872 hybrid contribution -1.151 1.670 -0.846 2.198 sum -1.261 -20.244 5.703 21.069 Atomic orbital electron populations 1.70108 1.07758 1.27648 1.51658 1.25944 0.95707 1.03234 0.94654 0.85424 0.79099 0.78883 0.77809 1.18656 1.20421 1.20239 1.21665 0.93421 0.92295 1.50504 0.92416 1.18971 0.94141 0.92989 0.94505 1.21559 0.98022 0.92322 1.00868 1.20330 0.93430 0.92993 0.90832 0.95434 1.60602 1.24513 1.17513 1.27744 1.21826 0.90036 0.96838 0.96390 1.21096 0.93836 0.99123 0.95147 0.93170 1.21369 0.97813 1.00346 0.93682 1.21604 0.97055 1.00259 0.97109 1.21475 0.95554 0.99069 0.98866 1.22205 0.99283 1.01418 0.95397 1.21829 0.89870 0.94936 0.88177 0.91847 1.86580 1.36091 1.54827 1.62194 1.19867 0.97507 0.96143 0.94206 1.21058 0.95418 0.96733 0.98385 1.21438 0.98320 0.96207 0.98678 1.21432 1.00028 1.00641 0.92519 1.21319 0.96496 0.96709 0.99854 1.21196 1.00106 0.97490 0.96845 0.92822 1.00046 0.98147 0.92313 0.93125 0.84139 0.97184 0.91418 0.91563 0.91434 0.92992 0.90567 0.90620 0.90897 0.92659 0.89930 0.75996 0.86036 0.84208 0.83683 0.84215 0.86779 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.76 13.29 21.45 0.28 -57.47 16 2 C 0.00 0.14 5.46 84.66 0.46 0.61 16 3 Si 0.96 45.24 29.54 68.60 2.03 47.27 16 4 H -0.26 -11.80 7.11 99.48 0.71 -11.10 16 5 H -0.28 -12.75 7.11 99.48 0.71 -12.04 16 6 H -0.28 -12.62 7.11 99.48 0.71 -11.91 16 7 C -0.54 -31.57 9.11 25.60 0.23 -31.34 16 8 H 0.06 3.27 7.74 -2.91 -0.02 3.24 16 9 C 0.03 1.68 4.80 29.85 0.14 1.82 16 10 C -0.09 -3.92 4.72 30.59 0.14 -3.78 16 11 C 0.13 5.00 2.24 44.17 0.10 5.10 16 12 H 0.03 1.12 7.66 -2.39 -0.02 1.10 16 13 N -0.67 -23.52 5.01 -495.43 -2.48 -26.01 16 14 C 0.08 2.50 4.79 86.30 0.41 2.91 16 15 C -0.07 -1.98 2.07 -10.80 -0.02 -2.01 16 16 H 0.05 1.62 8.14 -2.39 -0.02 1.60 16 17 C -0.09 -2.14 5.09 30.59 0.16 -1.98 16 18 C -0.12 -2.28 5.92 30.59 0.18 -2.10 16 19 C -0.11 -1.72 5.92 30.59 0.18 -1.54 16 20 C -0.15 -2.58 5.54 30.58 0.17 -2.42 16 21 C 0.11 2.48 2.90 30.58 0.09 2.56 16 22 H 0.06 1.27 8.14 -2.39 -0.02 1.25 16 23 O -0.59 -15.02 12.56 -148.98 -1.87 -16.89 16 24 C -0.08 -2.46 4.71 -19.87 -0.09 -2.55 16 25 C -0.10 -2.83 9.32 22.27 0.21 -2.62 16 26 C -0.13 -3.01 10.05 22.27 0.22 -2.79 16 27 C -0.13 -2.74 10.05 22.27 0.22 -2.52 16 28 C -0.13 -2.96 10.05 22.27 0.22 -2.74 16 29 C -0.14 -4.01 9.67 22.27 0.22 -3.79 16 30 H 0.26 15.30 8.31 -92.71 -0.77 14.53 16 31 H -0.02 -1.12 8.14 -2.38 -0.02 -1.14 16 32 H 0.00 0.02 6.43 -2.39 -0.02 0.00 16 33 H 0.06 2.54 8.14 -2.38 -0.02 2.52 16 34 H 0.05 2.22 8.14 -2.39 -0.02 2.20 16 35 H 0.34 13.61 6.47 -89.69 -0.58 13.03 16 36 H 0.01 0.37 7.45 -2.39 -0.02 0.35 16 37 H 0.07 2.07 8.00 -2.38 -0.02 2.05 16 38 H 0.07 1.39 8.14 -2.39 -0.02 1.37 16 39 H 0.07 1.73 7.75 -2.39 -0.02 1.72 16 40 H 0.05 1.08 8.14 -2.39 -0.02 1.06 16 41 H 0.08 1.21 8.14 -2.39 -0.02 1.19 16 42 H 0.08 0.98 8.14 -2.39 -0.02 0.96 16 43 H 0.07 0.98 8.14 -2.39 -0.02 0.96 16 44 H 0.05 1.17 8.14 -2.39 -0.02 1.15 16 45 H 0.08 1.12 8.14 -2.39 -0.02 1.10 16 46 H 0.39 6.08 9.08 -74.06 -0.67 5.41 16 47 H 0.12 3.63 7.73 -2.91 -0.02 3.61 16 48 H 0.14 2.53 8.06 -2.91 -0.02 2.51 16 49 H 0.15 2.17 8.06 -2.91 -0.02 2.15 16 50 H 0.14 2.52 8.06 -2.91 -0.02 2.50 16 51 H 0.11 3.25 8.04 -2.91 -0.02 3.23 16 Total: -1.00 -68.51 400.68 0.84 -67.67 By element: Atomic # 1 Polarization: 34.96 SS G_CDS: -0.36 Total: 34.59 kcal Atomic # 6 Polarization: -52.41 SS G_CDS: 3.25 Total: -49.16 kcal Atomic # 7 Polarization: -81.28 SS G_CDS: -2.20 Total: -83.48 kcal Atomic # 8 Polarization: -15.02 SS G_CDS: -1.87 Total: -16.89 kcal Atomic # 14 Polarization: 45.24 SS G_CDS: 2.03 Total: 47.27 kcal Total: -68.51 0.84 -67.67 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000577955671.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.217 kcal (2) G-P(sol) polarization free energy of solvation -68.510 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.727 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.842 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.668 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.885 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds