Wall clock time and date at job start Tue Mar 31 2020 11:08:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86803 * 120.00171 * 2 1 4 4 H 1.48498 * 109.47038 * 240.00359 * 3 2 1 5 5 H 1.48497 * 109.47172 * 0.02562 * 3 2 1 6 6 H 1.48502 * 109.46865 * 120.00389 * 3 2 1 7 7 C 1.37884 * 119.99986 * 180.02562 * 2 1 3 8 8 H 1.07991 * 119.99873 * 179.97438 * 7 2 1 9 9 C 1.50703 * 119.99602 * 359.97438 * 7 2 1 10 10 C 1.53006 * 109.46644 * 179.97438 * 9 7 2 11 11 C 1.53000 * 109.46726 * 180.02562 * 10 9 7 12 12 H 1.09004 * 109.47472 * 55.00138 * 11 10 9 13 13 N 1.46905 * 109.47134 * 295.00113 * 11 10 9 14 14 C 1.46901 * 110.99870 * 155.00327 * 13 11 10 15 15 C 1.53004 * 109.46916 * 180.02562 * 14 13 11 16 16 H 1.09000 * 109.46869 * 304.99619 * 15 14 13 17 17 C 1.53001 * 109.47245 * 64.99745 * 15 14 13 18 18 C 1.52992 * 109.47049 * 179.97438 * 17 15 14 19 19 C 1.53000 * 109.47450 * 300.00441 * 18 17 15 20 20 C 1.53001 * 109.47355 * 59.99746 * 19 18 17 21 21 C 1.52999 * 109.46840 * 184.99885 * 15 14 13 22 22 H 1.09000 * 109.47172 * 299.99548 * 21 15 14 23 23 O 1.42896 * 109.47303 * 59.99873 * 21 15 14 24 24 C 1.50696 * 109.47082 * 175.00146 * 11 10 9 25 25 C 1.38232 * 119.99979 * 79.72601 * 24 11 10 26 26 C 1.38241 * 120.00014 * 179.78842 * 25 24 11 27 27 C 1.38234 * 119.99932 * 0.46625 * 26 25 24 28 28 C 1.38240 * 120.00048 * 359.76474 * 27 26 25 29 29 C 1.38234 * 119.99512 * 0.02562 * 28 27 26 30 30 H 0.96998 * 119.99555 * 359.97438 * 1 2 3 31 31 H 1.09003 * 109.46835 * 60.00413 * 9 7 2 32 32 H 1.08997 * 109.47046 * 299.99781 * 9 7 2 33 33 H 1.08994 * 109.47066 * 60.00340 * 10 9 7 34 34 H 1.08993 * 109.46886 * 299.99998 * 10 9 7 35 35 H 1.00901 * 110.99869 * 31.05038 * 13 11 10 36 36 H 1.09004 * 109.47031 * 299.99620 * 14 13 11 37 37 H 1.08995 * 109.47111 * 59.99900 * 14 13 11 38 38 H 1.08997 * 109.47303 * 300.00187 * 17 15 14 39 39 H 1.09007 * 109.46679 * 59.99874 * 17 15 14 40 40 H 1.09009 * 109.47033 * 60.00009 * 18 17 15 41 41 H 1.08997 * 109.47035 * 180.02562 * 18 17 15 42 42 H 1.09004 * 109.47290 * 180.02562 * 19 18 17 43 43 H 1.09000 * 109.46830 * 299.99576 * 19 18 17 44 44 H 1.08998 * 109.46774 * 60.00090 * 20 19 18 45 45 H 1.08996 * 109.47248 * 180.02562 * 20 19 18 46 46 H 0.96705 * 114.00243 * 179.97438 * 23 21 15 47 47 H 1.08000 * 120.00378 * 0.02562 * 25 24 11 48 48 H 1.08002 * 119.99788 * 180.25183 * 26 25 24 49 49 H 1.07998 * 120.00163 * 179.78879 * 27 26 25 50 50 H 1.07993 * 120.00152 * 180.02562 * 28 27 26 51 51 H 1.08004 * 119.99813 * 179.97438 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1029 1.6964 -1.2125 5 1 1.2843 2.7465 0.0006 6 1 3.1030 1.6963 1.2125 7 6 2.0046 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4992 -0.0005 10 6 2.2453 -3.6621 -0.0018 11 6 1.4802 -4.9871 -0.0025 12 1 0.7876 -5.0065 -0.8440 13 7 0.7289 -5.1194 1.2530 14 6 -0.4297 -6.0061 1.0822 15 6 -1.1858 -6.1184 2.4077 16 1 -0.5006 -6.4443 3.1903 17 6 -1.7711 -4.7541 2.7781 18 6 -2.5277 -4.8665 4.1031 19 6 -3.6600 -5.8854 3.9591 20 6 -3.0746 -7.2496 3.5888 21 6 -2.3181 -7.1373 2.2642 22 1 -3.0032 -6.8113 1.4816 23 8 -1.7714 -8.4114 1.9183 24 6 2.4547 -6.1298 -0.1275 25 6 3.1530 -6.5672 0.9823 26 6 4.0437 -7.6182 0.8685 27 6 4.2431 -8.2256 -0.3571 28 6 3.5483 -7.7851 -1.4680 29 6 2.6544 -6.7369 -1.3533 30 1 -0.4849 0.8401 0.0004 31 1 0.6240 -2.5567 -0.8904 32 1 0.6247 -2.5571 0.8897 33 1 2.8725 -3.6048 0.8877 34 1 2.8712 -3.6040 -0.8922 35 1 0.4447 -4.2160 1.6012 36 1 -1.0922 -5.5956 0.3202 37 1 -0.0887 -6.9942 0.7732 38 1 -0.9645 -4.0282 2.8802 39 1 -2.4563 -4.4282 1.9954 40 1 -1.8428 -5.1928 4.8860 41 1 -2.9451 -3.8948 4.3667 42 1 -4.1992 -5.9651 4.9031 43 1 -4.3448 -5.5592 3.1764 44 1 -2.3898 -7.5757 4.3716 45 1 -3.8813 -7.9753 3.4858 46 1 -2.4338 -9.1077 1.8112 47 1 3.0000 -6.0903 1.9392 48 1 4.5863 -7.9626 1.7365 49 1 4.9415 -9.0445 -0.4468 50 1 3.7037 -8.2598 -2.4255 51 1 2.1118 -6.3924 -2.2212 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000577955672.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:08:13 Heat of formation + Delta-G solvation = -63.280270 kcal Electronic energy + Delta-G solvation = -27220.417860 eV Core-core repulsion = 23696.587196 eV Total energy + Delta-G solvation = -3523.830664 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 317.210 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -39.53833 -38.95247 -36.46182 -35.52022 -33.51151 -32.39882 -30.56541 -30.25758 -29.88262 -29.39467 -26.31098 -24.33651 -23.46224 -22.44661 -22.15560 -21.06587 -20.76803 -19.84387 -19.43110 -17.27694 -16.69924 -16.25903 -15.58104 -15.27106 -15.17484 -14.71067 -14.46627 -14.41269 -14.07578 -13.75167 -13.61717 -13.27597 -13.02838 -12.97303 -12.88232 -12.43744 -12.30039 -12.14564 -11.97057 -11.63873 -11.51758 -11.35456 -11.05912 -10.90573 -10.88774 -10.78612 -10.65530 -10.53592 -10.41840 -10.30480 -10.05025 -9.81585 -9.68378 -9.37645 -9.15148 -8.57527 -8.36602 -8.24808 -7.97381 -6.01945 -4.03813 1.70486 1.76782 3.33000 3.37145 3.40221 4.12375 4.14278 4.43930 4.46999 4.64913 4.76175 4.95002 5.10474 5.17272 5.20416 5.25890 5.28924 5.34099 5.34931 5.42379 5.47499 5.48706 5.51119 5.70280 5.77253 5.85580 5.88418 5.94018 5.95611 5.98789 6.04771 6.07614 6.18490 6.21157 6.30006 6.35024 6.37798 6.40787 6.51975 6.57536 6.73651 6.81769 6.89582 7.02872 7.04903 7.35972 7.54908 7.60188 7.60956 7.77888 7.93223 7.98541 8.40715 9.02250 9.60379 11.09099 Molecular weight = 317.21amu Principal moments of inertia in cm(-1) A = 0.007457 B = 0.004711 C = 0.003058 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3754.014529 B = 5942.117942 C = 9152.929158 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.058 3.942 3 Si 0.891 3.109 4 H -0.277 1.277 5 H -0.288 1.288 6 H -0.277 1.277 7 C -0.519 4.519 8 H 0.055 0.945 9 C 0.023 3.977 10 C -0.108 4.108 11 C 0.124 3.876 12 H 0.046 0.954 13 N -0.683 5.683 14 C 0.069 3.931 15 C -0.073 4.073 16 H 0.083 0.917 17 C -0.118 4.118 18 C -0.120 4.120 19 C -0.117 4.117 20 C -0.149 4.149 21 C 0.110 3.890 22 H 0.052 0.948 23 O -0.563 6.563 24 C -0.058 4.058 25 C -0.086 4.086 26 C -0.129 4.129 27 C -0.134 4.134 28 C -0.127 4.127 29 C -0.122 4.122 30 H 0.260 0.740 31 H 0.012 0.988 32 H 0.016 0.984 33 H 0.059 0.941 34 H 0.055 0.945 35 H 0.353 0.647 36 H 0.023 0.977 37 H 0.075 0.925 38 H 0.078 0.922 39 H 0.063 0.937 40 H 0.063 0.937 41 H 0.064 0.936 42 H 0.061 0.939 43 H 0.062 0.938 44 H 0.069 0.931 45 H 0.060 0.940 46 H 0.371 0.629 47 H 0.128 0.872 48 H 0.114 0.886 49 H 0.112 0.888 50 H 0.114 0.886 51 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.141 -17.350 4.817 18.476 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.535 5.535 2 C -0.143 4.143 3 Si 0.719 3.281 4 H -0.203 1.203 5 H -0.213 1.213 6 H -0.202 1.202 7 C -0.557 4.557 8 H 0.073 0.927 9 C -0.014 4.014 10 C -0.146 4.146 11 C 0.014 3.986 12 H 0.064 0.936 13 N -0.318 5.318 14 C -0.060 4.060 15 C -0.092 4.092 16 H 0.101 0.899 17 C -0.156 4.156 18 C -0.157 4.157 19 C -0.155 4.155 20 C -0.187 4.187 21 C 0.051 3.949 22 H 0.070 0.930 23 O -0.368 6.368 24 C -0.059 4.059 25 C -0.104 4.104 26 C -0.147 4.147 27 C -0.152 4.152 28 C -0.145 4.145 29 C -0.141 4.141 30 H 0.070 0.930 31 H 0.031 0.969 32 H 0.034 0.966 33 H 0.078 0.922 34 H 0.074 0.926 35 H 0.176 0.824 36 H 0.042 0.958 37 H 0.094 0.906 38 H 0.096 0.904 39 H 0.082 0.918 40 H 0.081 0.919 41 H 0.083 0.917 42 H 0.080 0.920 43 H 0.080 0.920 44 H 0.088 0.912 45 H 0.078 0.922 46 H 0.218 0.782 47 H 0.146 0.854 48 H 0.132 0.868 49 H 0.130 0.870 50 H 0.132 0.868 51 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges -3.337 -17.350 5.101 18.390 hybrid contribution -0.759 1.182 -0.605 1.530 sum -4.096 -16.168 4.496 17.274 Atomic orbital electron populations 1.69945 1.06011 1.26675 1.50848 1.24998 0.94827 0.99172 0.95263 0.86675 0.79616 0.83165 0.78668 1.20271 1.21329 1.20208 1.21181 0.93040 0.90924 1.50579 0.92710 1.19121 0.93937 0.91564 0.96777 1.21830 0.99213 0.92225 1.01344 1.20551 0.93501 0.93534 0.90969 0.93558 1.60520 1.24174 1.18456 1.28685 1.21905 0.90999 0.97996 0.95109 1.21101 0.95573 0.93631 0.98887 0.89858 1.21624 1.00296 0.96515 0.97178 1.21544 0.97276 0.98989 0.97939 1.21492 0.98040 0.94628 1.01322 1.22239 0.99820 0.97812 0.98789 1.21816 0.94631 0.83913 0.94528 0.93015 1.86582 1.37964 1.19664 1.92549 1.20037 0.96867 0.96001 0.92956 1.21035 0.94537 0.95732 0.99088 1.21139 0.99147 0.97194 0.97236 1.21014 1.00432 1.00446 0.93289 1.20988 0.97573 0.97658 0.98256 1.21043 0.99165 0.96538 0.97311 0.93000 0.96916 0.96592 0.92243 0.92611 0.82432 0.95832 0.90625 0.90353 0.91827 0.91865 0.91686 0.92006 0.91954 0.91185 0.92160 0.78235 0.85372 0.86757 0.86955 0.86795 0.86633 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.33 13.29 55.43 0.74 -25.59 16 2 C 0.06 1.66 5.46 -17.82 -0.10 1.56 16 3 Si 0.89 21.56 29.54 -169.99 -5.02 16.54 16 4 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 5 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 6 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 7 C -0.52 -14.49 9.11 -34.44 -0.31 -14.81 16 8 H 0.05 1.50 7.74 -52.49 -0.41 1.10 16 9 C 0.02 0.58 4.80 -27.88 -0.13 0.44 16 10 C -0.11 -2.24 4.72 -26.73 -0.13 -2.37 16 11 C 0.12 2.21 2.24 -68.86 -0.15 2.05 16 12 H 0.05 0.86 7.66 -51.93 -0.40 0.46 16 13 N -0.68 -11.41 5.56 -107.95 -0.60 -12.01 16 14 C 0.07 1.05 4.86 -3.82 -0.02 1.04 16 15 C -0.07 -0.96 2.14 -90.62 -0.19 -1.15 16 16 H 0.08 1.18 8.14 -51.93 -0.42 0.76 16 17 C -0.12 -1.54 4.98 -26.73 -0.13 -1.68 16 18 C -0.12 -1.31 5.92 -26.74 -0.16 -1.47 16 19 C -0.12 -1.11 5.92 -26.73 -0.16 -1.26 16 20 C -0.15 -1.39 5.54 -26.75 -0.15 -1.54 16 21 C 0.11 1.23 2.90 -26.76 -0.08 1.16 16 22 H 0.05 0.58 8.14 -51.93 -0.42 0.15 16 23 O -0.56 -6.44 12.56 -35.23 -0.44 -6.89 16 24 C -0.06 -0.95 4.71 -104.63 -0.49 -1.45 16 25 C -0.09 -1.35 9.32 -39.58 -0.37 -1.72 16 26 C -0.13 -1.79 10.05 -39.58 -0.40 -2.19 16 27 C -0.13 -1.75 10.05 -39.58 -0.40 -2.15 16 28 C -0.13 -1.71 10.05 -39.58 -0.40 -2.11 16 29 C -0.12 -1.86 9.67 -39.58 -0.38 -2.24 16 30 H 0.26 7.28 8.31 -40.82 -0.34 6.94 16 31 H 0.01 0.34 8.14 -51.93 -0.42 -0.09 16 32 H 0.02 0.41 6.43 -51.93 -0.33 0.08 16 33 H 0.06 1.24 8.14 -51.93 -0.42 0.82 16 34 H 0.06 1.17 8.14 -51.93 -0.42 0.75 16 35 H 0.35 6.37 4.72 -39.29 -0.19 6.18 16 36 H 0.02 0.38 8.06 -51.93 -0.42 -0.04 16 37 H 0.08 1.24 7.39 -51.93 -0.38 0.85 16 38 H 0.08 1.15 6.68 -51.93 -0.35 0.80 16 39 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 40 H 0.06 0.68 8.14 -51.92 -0.42 0.26 16 41 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 42 H 0.06 0.52 8.14 -51.93 -0.42 0.09 16 43 H 0.06 0.59 8.14 -51.93 -0.42 0.16 16 44 H 0.07 0.70 8.14 -51.93 -0.42 0.27 16 45 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 46 H 0.37 2.61 9.08 45.56 0.41 3.03 16 47 H 0.13 2.04 7.73 -52.49 -0.41 1.64 16 48 H 0.11 1.33 8.06 -52.49 -0.42 0.91 16 49 H 0.11 1.18 8.06 -52.49 -0.42 0.76 16 50 H 0.11 1.27 8.06 -52.49 -0.42 0.84 16 51 H 0.12 1.64 8.04 -52.48 -0.42 1.22 16 LS Contribution 398.41 15.07 6.00 6.00 Total: -1.00 -30.17 398.41 -11.84 -42.01 By element: Atomic # 1 Polarization: 18.19 SS G_CDS: -8.36 Total: 9.83 kcal Atomic # 6 Polarization: -25.74 SS G_CDS: -4.15 Total: -29.89 kcal Atomic # 7 Polarization: -37.74 SS G_CDS: 0.14 Total: -37.60 kcal Atomic # 8 Polarization: -6.44 SS G_CDS: -0.44 Total: -6.89 kcal Atomic # 14 Polarization: 21.56 SS G_CDS: -5.02 Total: 16.54 kcal Total LS contribution 6.00 Total: 6.00 kcal Total: -30.17 -11.84 -42.01 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000577955672.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.275 kcal (2) G-P(sol) polarization free energy of solvation -30.168 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.443 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.837 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.005 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.280 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds