Wall clock time and date at job start Tue Mar 31 2020 11:08:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86803 * 120.00171 * 2 1 4 4 H 1.48498 * 109.47038 * 240.00359 * 3 2 1 5 5 H 1.48497 * 109.47172 * 0.02562 * 3 2 1 6 6 H 1.48502 * 109.46865 * 120.00389 * 3 2 1 7 7 C 1.37884 * 119.99986 * 180.02562 * 2 1 3 8 8 H 1.07991 * 119.99873 * 179.97438 * 7 2 1 9 9 C 1.50703 * 119.99602 * 359.97438 * 7 2 1 10 10 C 1.53006 * 109.46644 * 179.97438 * 9 7 2 11 11 C 1.53000 * 109.46726 * 180.02562 * 10 9 7 12 12 H 1.09004 * 109.47472 * 55.00138 * 11 10 9 13 13 N 1.46905 * 109.47134 * 295.00113 * 11 10 9 14 14 C 1.46901 * 110.99870 * 155.00327 * 13 11 10 15 15 C 1.53004 * 109.46916 * 180.02562 * 14 13 11 16 16 H 1.09000 * 109.46869 * 304.99619 * 15 14 13 17 17 C 1.53001 * 109.47245 * 64.99745 * 15 14 13 18 18 C 1.52992 * 109.47049 * 179.97438 * 17 15 14 19 19 C 1.53000 * 109.47450 * 300.00441 * 18 17 15 20 20 C 1.53001 * 109.47355 * 59.99746 * 19 18 17 21 21 C 1.52999 * 109.46840 * 184.99885 * 15 14 13 22 22 H 1.09000 * 109.47172 * 299.99548 * 21 15 14 23 23 O 1.42896 * 109.47303 * 59.99873 * 21 15 14 24 24 C 1.50696 * 109.47082 * 175.00146 * 11 10 9 25 25 C 1.38232 * 119.99979 * 79.72601 * 24 11 10 26 26 C 1.38241 * 120.00014 * 179.78842 * 25 24 11 27 27 C 1.38234 * 119.99932 * 0.46625 * 26 25 24 28 28 C 1.38240 * 120.00048 * 359.76474 * 27 26 25 29 29 C 1.38234 * 119.99512 * 0.02562 * 28 27 26 30 30 H 0.96998 * 119.99555 * 359.97438 * 1 2 3 31 31 H 1.09003 * 109.46835 * 60.00413 * 9 7 2 32 32 H 1.08997 * 109.47046 * 299.99781 * 9 7 2 33 33 H 1.08994 * 109.47066 * 60.00340 * 10 9 7 34 34 H 1.08993 * 109.46886 * 299.99998 * 10 9 7 35 35 H 1.00901 * 110.99869 * 31.05038 * 13 11 10 36 36 H 1.09004 * 109.47031 * 299.99620 * 14 13 11 37 37 H 1.08995 * 109.47111 * 59.99900 * 14 13 11 38 38 H 1.08997 * 109.47303 * 300.00187 * 17 15 14 39 39 H 1.09007 * 109.46679 * 59.99874 * 17 15 14 40 40 H 1.09009 * 109.47033 * 60.00009 * 18 17 15 41 41 H 1.08997 * 109.47035 * 180.02562 * 18 17 15 42 42 H 1.09004 * 109.47290 * 180.02562 * 19 18 17 43 43 H 1.09000 * 109.46830 * 299.99576 * 19 18 17 44 44 H 1.08998 * 109.46774 * 60.00090 * 20 19 18 45 45 H 1.08996 * 109.47248 * 180.02562 * 20 19 18 46 46 H 0.96705 * 114.00243 * 179.97438 * 23 21 15 47 47 H 1.08000 * 120.00378 * 0.02562 * 25 24 11 48 48 H 1.08002 * 119.99788 * 180.25183 * 26 25 24 49 49 H 1.07998 * 120.00163 * 179.78879 * 27 26 25 50 50 H 1.07993 * 120.00152 * 180.02562 * 28 27 26 51 51 H 1.08004 * 119.99813 * 179.97438 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1029 1.6964 -1.2125 5 1 1.2843 2.7465 0.0006 6 1 3.1030 1.6963 1.2125 7 6 2.0046 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4992 -0.0005 10 6 2.2453 -3.6621 -0.0018 11 6 1.4802 -4.9871 -0.0025 12 1 0.7876 -5.0065 -0.8440 13 7 0.7289 -5.1194 1.2530 14 6 -0.4297 -6.0061 1.0822 15 6 -1.1858 -6.1184 2.4077 16 1 -0.5006 -6.4443 3.1903 17 6 -1.7711 -4.7541 2.7781 18 6 -2.5277 -4.8665 4.1031 19 6 -3.6600 -5.8854 3.9591 20 6 -3.0746 -7.2496 3.5888 21 6 -2.3181 -7.1373 2.2642 22 1 -3.0032 -6.8113 1.4816 23 8 -1.7714 -8.4114 1.9183 24 6 2.4547 -6.1298 -0.1275 25 6 3.1530 -6.5672 0.9823 26 6 4.0437 -7.6182 0.8685 27 6 4.2431 -8.2256 -0.3571 28 6 3.5483 -7.7851 -1.4680 29 6 2.6544 -6.7369 -1.3533 30 1 -0.4849 0.8401 0.0004 31 1 0.6240 -2.5567 -0.8904 32 1 0.6247 -2.5571 0.8897 33 1 2.8725 -3.6048 0.8877 34 1 2.8712 -3.6040 -0.8922 35 1 0.4447 -4.2160 1.6012 36 1 -1.0922 -5.5956 0.3202 37 1 -0.0887 -6.9942 0.7732 38 1 -0.9645 -4.0282 2.8802 39 1 -2.4563 -4.4282 1.9954 40 1 -1.8428 -5.1928 4.8860 41 1 -2.9451 -3.8948 4.3667 42 1 -4.1992 -5.9651 4.9031 43 1 -4.3448 -5.5592 3.1764 44 1 -2.3898 -7.5757 4.3716 45 1 -3.8813 -7.9753 3.4858 46 1 -2.4338 -9.1077 1.8112 47 1 3.0000 -6.0903 1.9392 48 1 4.5863 -7.9626 1.7365 49 1 4.9415 -9.0445 -0.4468 50 1 3.7037 -8.2598 -2.4255 51 1 2.1118 -6.3924 -2.2212 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000577955672.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:08:13 Heat of formation + Delta-G solvation = -80.157917 kcal Electronic energy + Delta-G solvation = -27221.149729 eV Core-core repulsion = 23696.587196 eV Total energy + Delta-G solvation = -3524.562534 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 317.210 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -40.66694 -40.01664 -37.80220 -36.46554 -35.35611 -33.88323 -31.90660 -31.67781 -30.95061 -30.44390 -28.01775 -25.69176 -25.00976 -23.44586 -23.25626 -22.55827 -21.90967 -21.03841 -20.71047 -18.62087 -18.16826 -17.55611 -16.86018 -16.60312 -16.56920 -16.25112 -15.77732 -15.38917 -15.18166 -14.94175 -14.78069 -14.54933 -14.34532 -14.13741 -14.09589 -13.81824 -13.69475 -13.58700 -13.34293 -13.08662 -12.82857 -12.60107 -12.53291 -12.34072 -12.27501 -12.07320 -11.91033 -11.84778 -11.66139 -11.59205 -11.34785 -11.28970 -11.13885 -11.00420 -10.63515 -10.54514 -9.70591 -9.47809 -9.39123 -8.20437 -6.30933 0.55635 0.63343 1.39268 1.41627 1.49512 2.40302 2.97373 3.12289 3.18494 3.31148 3.70300 3.77729 3.95877 4.00372 4.08620 4.19590 4.26323 4.29731 4.31441 4.35715 4.40047 4.42889 4.46620 4.48932 4.54816 4.66237 4.68286 4.76156 4.81724 4.86952 4.99504 5.01485 5.04617 5.11224 5.17519 5.21307 5.22901 5.24676 5.29607 5.30726 5.35770 5.49048 5.51936 5.66312 5.67296 5.72194 5.80673 5.82120 6.20693 6.22271 6.26502 6.44435 6.83611 6.94836 7.37822 8.90473 Molecular weight = 317.21amu Principal moments of inertia in cm(-1) A = 0.007457 B = 0.004711 C = 0.003058 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3754.014529 B = 5942.117942 C = 9152.929158 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.928 5.928 2 C 0.006 3.994 3 Si 0.960 3.040 4 H -0.269 1.269 5 H -0.282 1.282 6 H -0.268 1.268 7 C -0.544 4.544 8 H 0.056 0.944 9 C 0.033 3.967 10 C -0.092 4.092 11 C 0.134 3.866 12 H 0.032 0.968 13 N -0.680 5.680 14 C 0.077 3.923 15 C -0.066 4.066 16 H 0.073 0.927 17 C -0.116 4.116 18 C -0.118 4.118 19 C -0.114 4.114 20 C -0.141 4.141 21 C 0.114 3.886 22 H 0.052 0.948 23 O -0.580 6.580 24 C -0.078 4.078 25 C -0.101 4.101 26 C -0.131 4.131 27 C -0.129 4.129 28 C -0.126 4.126 29 C -0.137 4.137 30 H 0.263 0.737 31 H -0.016 1.016 32 H 0.002 0.998 33 H 0.056 0.944 34 H 0.051 0.949 35 H 0.342 0.658 36 H 0.011 0.989 37 H 0.067 0.933 38 H 0.053 0.947 39 H 0.053 0.947 40 H 0.065 0.935 41 H 0.065 0.935 42 H 0.080 0.920 43 H 0.063 0.937 44 H 0.066 0.934 45 H 0.084 0.916 46 H 0.391 0.609 47 H 0.118 0.882 48 H 0.138 0.862 49 H 0.146 0.854 50 H 0.142 0.858 51 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.464 -18.942 5.269 19.964 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.568 5.568 2 C -0.192 4.192 3 Si 0.785 3.215 4 H -0.194 1.194 5 H -0.207 1.207 6 H -0.192 1.192 7 C -0.582 4.582 8 H 0.074 0.926 9 C -0.004 4.004 10 C -0.129 4.129 11 C 0.024 3.976 12 H 0.050 0.950 13 N -0.313 5.313 14 C -0.052 4.052 15 C -0.085 4.085 16 H 0.092 0.908 17 C -0.154 4.154 18 C -0.155 4.155 19 C -0.152 4.152 20 C -0.179 4.179 21 C 0.054 3.946 22 H 0.070 0.930 23 O -0.388 6.388 24 C -0.078 4.078 25 C -0.119 4.119 26 C -0.149 4.149 27 C -0.147 4.147 28 C -0.143 4.143 29 C -0.155 4.155 30 H 0.072 0.928 31 H 0.003 0.997 32 H 0.021 0.979 33 H 0.074 0.926 34 H 0.070 0.930 35 H 0.164 0.836 36 H 0.029 0.971 37 H 0.086 0.914 38 H 0.072 0.928 39 H 0.072 0.928 40 H 0.084 0.916 41 H 0.084 0.916 42 H 0.099 0.901 43 H 0.082 0.918 44 H 0.085 0.915 45 H 0.103 0.897 46 H 0.241 0.759 47 H 0.136 0.864 48 H 0.156 0.844 49 H 0.164 0.836 50 H 0.160 0.840 51 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -2.662 -18.973 5.550 19.947 hybrid contribution -0.947 1.613 -0.785 2.029 sum -3.609 -17.360 4.765 18.360 Atomic orbital electron populations 1.70072 1.07574 1.27739 1.51416 1.25879 0.95722 1.02972 0.94621 0.85581 0.78391 0.78475 0.79098 1.19450 1.20687 1.19249 1.21593 0.93374 0.92354 1.50845 0.92619 1.18960 0.94096 0.92709 0.94678 1.21579 0.98151 0.92393 1.00820 1.20341 0.93463 0.92931 0.90847 0.95007 1.60594 1.24790 1.17886 1.28031 1.21854 0.90329 0.96812 0.96219 1.21021 0.96032 0.94476 0.97002 0.90831 1.21558 0.99534 0.95884 0.98399 1.21532 0.97771 0.99858 0.96367 1.21488 0.97325 0.93987 1.02379 1.22176 1.00164 0.98321 0.97204 1.21721 0.93542 0.83431 0.95857 0.92984 1.86528 1.39424 1.20192 1.92665 1.19900 0.97469 0.96307 0.94157 1.21053 0.95598 0.96878 0.98393 1.21438 0.98428 0.96255 0.98738 1.21434 1.00113 1.00620 0.92487 1.21336 0.96450 0.96696 0.99855 1.21208 1.00066 0.97439 0.96824 0.92793 0.99726 0.97938 0.92574 0.93046 0.83632 0.97053 0.91434 0.92826 0.92776 0.91632 0.91626 0.90141 0.91811 0.91513 0.89707 0.75911 0.86407 0.84383 0.83614 0.84006 0.86458 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.01 13.29 21.45 0.28 -55.72 16 2 C 0.01 0.36 5.46 84.66 0.46 0.83 16 3 Si 0.96 44.55 29.54 68.60 2.03 46.58 16 4 H -0.27 -12.11 7.11 99.48 0.71 -11.41 16 5 H -0.28 -12.71 7.11 99.48 0.71 -12.00 16 6 H -0.27 -11.97 7.11 99.48 0.71 -11.26 16 7 C -0.54 -31.29 9.11 25.60 0.23 -31.05 16 8 H 0.06 3.12 7.74 -2.92 -0.02 3.09 16 9 C 0.03 1.73 4.80 29.85 0.14 1.88 16 10 C -0.09 -4.00 4.72 30.60 0.14 -3.85 16 11 C 0.13 5.06 2.24 44.17 0.10 5.16 16 12 H 0.03 1.27 7.66 -2.38 -0.02 1.26 16 13 N -0.68 -24.29 5.56 -495.43 -2.75 -27.04 16 14 C 0.08 2.49 4.86 86.30 0.42 2.91 16 15 C -0.07 -1.81 2.14 -10.79 -0.02 -1.83 16 16 H 0.07 2.15 8.14 -2.39 -0.02 2.13 16 17 C -0.12 -3.19 4.98 30.59 0.15 -3.04 16 18 C -0.12 -2.57 5.92 30.59 0.18 -2.39 16 19 C -0.11 -1.97 5.92 30.59 0.18 -1.79 16 20 C -0.14 -2.37 5.54 30.58 0.17 -2.20 16 21 C 0.11 2.47 2.90 30.58 0.09 2.56 16 22 H 0.05 1.13 8.14 -2.39 -0.02 1.11 16 23 O -0.58 -12.68 12.56 -148.98 -1.87 -14.55 16 24 C -0.08 -2.61 4.71 -19.87 -0.09 -2.71 16 25 C -0.10 -3.18 9.32 22.27 0.21 -2.97 16 26 C -0.13 -3.38 10.05 22.27 0.22 -3.15 16 27 C -0.13 -2.98 10.05 22.27 0.22 -2.75 16 28 C -0.13 -3.11 10.05 22.27 0.22 -2.89 16 29 C -0.14 -4.13 9.67 22.27 0.22 -3.91 16 30 H 0.26 14.99 8.31 -92.71 -0.77 14.22 16 31 H -0.02 -0.90 8.14 -2.39 -0.02 -0.92 16 32 H 0.00 0.13 6.43 -2.39 -0.02 0.12 16 33 H 0.06 2.46 8.14 -2.39 -0.02 2.44 16 34 H 0.05 2.25 8.14 -2.39 -0.02 2.23 16 35 H 0.34 13.44 4.72 -89.69 -0.42 13.02 16 36 H 0.01 0.39 8.06 -2.39 -0.02 0.37 16 37 H 0.07 2.30 7.39 -2.39 -0.02 2.28 16 38 H 0.05 1.72 6.68 -2.39 -0.02 1.70 16 39 H 0.05 1.56 8.14 -2.38 -0.02 1.54 16 40 H 0.06 1.40 8.14 -2.38 -0.02 1.38 16 41 H 0.07 1.41 8.14 -2.39 -0.02 1.40 16 42 H 0.08 1.14 8.14 -2.38 -0.02 1.12 16 43 H 0.06 1.10 8.14 -2.39 -0.02 1.08 16 44 H 0.07 1.20 8.14 -2.39 -0.02 1.18 16 45 H 0.08 1.05 8.14 -2.39 -0.02 1.04 16 46 H 0.39 4.79 9.08 -74.05 -0.67 4.12 16 47 H 0.12 3.87 7.73 -2.91 -0.02 3.84 16 48 H 0.14 2.84 8.06 -2.91 -0.02 2.82 16 49 H 0.15 2.41 8.06 -2.91 -0.02 2.38 16 50 H 0.14 2.68 8.06 -2.91 -0.02 2.66 16 51 H 0.12 3.38 8.04 -2.91 -0.02 3.36 16 Total: -1.00 -66.39 398.41 0.73 -65.66 By element: Atomic # 1 Polarization: 36.49 SS G_CDS: -0.20 Total: 36.29 kcal Atomic # 6 Polarization: -54.46 SS G_CDS: 3.25 Total: -51.21 kcal Atomic # 7 Polarization: -80.30 SS G_CDS: -2.47 Total: -82.77 kcal Atomic # 8 Polarization: -12.68 SS G_CDS: -1.87 Total: -14.55 kcal Atomic # 14 Polarization: 44.55 SS G_CDS: 2.03 Total: 46.58 kcal Total: -66.39 0.73 -65.66 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000577955672.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.500 kcal (2) G-P(sol) polarization free energy of solvation -66.392 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.892 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.734 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.658 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.158 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds