Wall clock time and date at job start Tue Mar 31 2020 11:42:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38140 * 120.02974 * 2 1 4 4 C 1.38267 * 120.05584 * 179.69855 * 3 2 1 5 5 C 1.38271 * 120.11044 * 0.30379 * 4 3 2 6 6 C 1.38140 * 120.05651 * 359.97197 * 5 4 3 7 7 C 1.50700 * 120.03026 * 180.02562 * 6 5 4 8 8 C 1.38732 * 120.02706 * 180.25288 * 2 1 3 9 9 O 1.35904 * 120.05622 * 0.02562 * 8 2 1 10 10 C 1.42897 * 116.99911 * 270.27232 * 9 8 2 11 11 C 1.53009 * 109.47098 * 179.97438 * 10 9 8 12 12 N 1.46897 * 109.46738 * 65.12745 * 11 10 9 13 13 C 1.46846 * 110.99851 * 200.03445 * 12 11 10 14 14 C 1.53038 * 109.52478 * 174.16189 * 13 12 11 15 15 C 1.53110 * 109.27779 * 59.17942 * 14 13 12 16 16 C 1.52997 * 109.57629 * 182.40901 * 15 14 13 17 17 C 1.50701 * 109.47115 * 294.71376 * 16 15 14 18 18 H 1.07996 * 119.99988 * 359.97438 * 17 16 15 19 19 C 1.37881 * 120.00056 * 179.97438 * 17 16 15 20 20 N 1.31515 * 120.00149 * 180.02562 * 19 17 16 21 21 Si 1.86803 * 120.00064 * 0.02562 * 19 17 16 22 22 H 1.48501 * 109.46970 * 89.99528 * 21 19 17 23 23 H 1.48503 * 109.47249 * 209.99936 * 21 19 17 24 24 H 1.48505 * 109.47194 * 330.00181 * 21 19 17 25 25 C 1.53120 * 109.16044 * 302.34453 * 15 14 13 26 26 C 1.46837 * 111.00213 * 75.82840 * 12 11 10 27 27 H 1.08997 * 109.46953 * 89.99560 * 1 2 3 28 28 H 1.08994 * 109.47223 * 209.99675 * 1 2 3 29 29 H 1.08999 * 109.46912 * 329.99854 * 1 2 3 30 30 H 1.08001 * 119.97337 * 359.97438 * 3 2 1 31 31 H 1.08002 * 119.94485 * 180.27727 * 4 3 2 32 32 H 1.08004 * 119.97246 * 179.97438 * 5 4 3 33 33 H 1.09006 * 109.46862 * 90.00083 * 7 6 5 34 34 H 1.08998 * 109.47804 * 209.99991 * 7 6 5 35 35 H 1.09001 * 109.46857 * 330.00535 * 7 6 5 36 36 H 1.08993 * 109.47583 * 300.00051 * 10 9 8 37 37 H 1.09004 * 109.46977 * 60.00434 * 10 9 8 38 38 H 1.08992 * 109.47256 * 185.12940 * 11 10 9 39 39 H 1.09008 * 109.46671 * 305.12867 * 11 10 9 40 40 H 1.09001 * 109.46487 * 294.17716 * 13 12 11 41 41 H 1.09007 * 109.46251 * 54.14243 * 13 12 11 42 42 H 1.08996 * 109.50236 * 299.23526 * 14 13 12 43 43 H 1.09001 * 109.50187 * 179.11965 * 14 13 12 44 44 H 1.09001 * 109.52510 * 62.24943 * 15 14 13 45 45 H 1.09005 * 109.47335 * 54.71297 * 16 15 14 46 46 H 1.08998 * 109.47718 * 174.71386 * 16 15 14 47 47 H 0.96996 * 120.00317 * 180.02562 * 20 19 17 48 48 H 1.08997 * 109.50610 * 297.71204 * 25 15 14 49 49 H 1.09009 * 109.50224 * 177.59437 * 25 15 14 50 50 H 1.09008 * 109.45989 * 305.85012 * 26 12 11 51 51 H 1.08998 * 109.46944 * 65.82890 * 26 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1983 1.1960 0.0000 4 6 3.5810 1.1966 0.0063 5 6 4.2752 0.0008 0.0063 6 6 3.5886 -1.1978 0.0005 7 6 4.3458 -2.5008 0.0011 8 6 2.2012 -1.2011 -0.0053 9 8 1.5234 -2.3791 -0.0110 10 6 1.1941 -2.9442 1.2595 11 6 0.4379 -4.2582 1.0526 12 7 1.3254 -5.2382 0.4125 13 6 0.5517 -6.3107 -0.2258 14 6 1.4965 -7.2301 -1.0031 15 6 2.5293 -7.8235 -0.0411 16 6 3.5141 -8.6967 -0.8211 17 6 2.7863 -9.8847 -1.3954 18 1 1.7273 -10.0052 -1.2211 19 6 3.4723 -10.8180 -2.1434 20 7 2.8371 -11.8545 -2.6451 21 14 5.3042 -10.6101 -2.4443 22 1 6.0635 -11.2854 -1.3614 23 1 5.6629 -11.2153 -3.7521 24 1 5.6426 -9.1641 -2.4585 25 6 3.2882 -6.6850 0.6463 26 6 2.2914 -5.7815 1.3758 27 1 -0.3633 0.0001 -1.0276 28 1 -0.3633 -0.8900 0.5138 29 1 -0.3633 0.8900 0.5139 30 1 1.6584 2.1313 -0.0004 31 1 4.1196 2.1327 0.0108 32 1 5.3552 0.0039 0.0108 33 1 4.5237 -2.8172 1.0289 34 1 3.7613 -3.2610 -0.5170 35 1 5.3002 -2.3665 -0.5081 36 1 2.1090 -3.1355 1.8202 37 1 0.5662 -2.2477 1.8152 38 1 0.1075 -4.6430 2.0173 39 1 -0.4288 -4.0821 0.4154 40 1 0.0311 -6.8875 0.5387 41 1 -0.1763 -5.8754 -0.9105 42 1 2.0070 -6.6569 -1.7769 43 1 0.9237 -8.0349 -1.4638 44 1 2.0218 -8.4287 0.7102 45 1 3.9541 -8.1141 -1.6305 46 1 4.3023 -9.0422 -0.1521 47 1 3.3198 -12.5112 -3.1710 48 1 3.8270 -6.1033 -0.1015 49 1 3.9956 -7.1005 1.3641 50 1 2.8272 -4.9617 1.8544 51 1 1.7628 -6.3609 2.1327 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000579105765.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:42:58 Heat of formation + Delta-G solvation = -50.167653 kcal Electronic energy + Delta-G solvation = -27113.974772 eV Core-core repulsion = 23590.712713 eV Total energy + Delta-G solvation = -3523.262058 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 317.210 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.13545 -40.05975 -38.19015 -36.19728 -34.46119 -34.36774 -32.21240 -31.73723 -31.20140 -29.13404 -27.65146 -27.49115 -25.63045 -23.94550 -23.23495 -22.60126 -21.79137 -21.72949 -20.47127 -18.88389 -18.58730 -17.59148 -16.80402 -16.45262 -16.30751 -16.09689 -15.69754 -15.21925 -15.17323 -14.99089 -14.82446 -14.54265 -14.26603 -14.12174 -14.02700 -13.94760 -13.82590 -13.52380 -13.36496 -13.14692 -12.94263 -12.76538 -12.71548 -12.51609 -12.38141 -12.23298 -12.08413 -12.03971 -11.90847 -11.74148 -11.63690 -11.22175 -10.94966 -10.77200 -10.70910 -10.62337 -9.49059 -9.38895 -9.13593 -8.26294 -6.28092 0.31049 0.41941 1.34686 1.37159 1.49199 2.37614 2.53329 2.95479 3.02890 3.09236 3.87351 3.94473 3.97140 4.01370 4.03522 4.13883 4.20102 4.27142 4.39394 4.41284 4.42245 4.49731 4.53458 4.57716 4.64013 4.70207 4.73437 4.78789 4.78966 4.81213 4.82519 4.91143 4.94481 4.96486 4.98297 5.07170 5.13659 5.24264 5.25958 5.34768 5.40725 5.42917 5.52958 5.56926 5.57758 5.69649 5.72940 5.76140 5.93720 6.20146 6.27075 6.34785 6.77255 6.79049 7.35564 8.90440 Molecular weight = 317.21amu Principal moments of inertia in cm(-1) A = 0.019112 B = 0.002815 C = 0.002595 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1464.729404 B = 9945.200532 C =10785.454493 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 C -0.117 4.117 3 C -0.121 4.121 4 C -0.123 4.123 5 C -0.125 4.125 6 C -0.115 4.115 7 C -0.108 4.108 8 C 0.074 3.926 9 O -0.330 6.330 10 C 0.079 3.921 11 C 0.057 3.943 12 N -0.537 5.537 13 C 0.069 3.931 14 C -0.095 4.095 15 C -0.069 4.069 16 C -0.005 4.005 17 C -0.517 4.517 18 H 0.034 0.966 19 C 0.001 3.999 20 N -0.954 5.954 21 Si 0.947 3.053 22 H -0.267 1.267 23 H -0.286 1.286 24 H -0.250 1.250 25 C -0.106 4.106 26 C 0.064 3.936 27 H 0.069 0.931 28 H 0.063 0.937 29 H 0.082 0.918 30 H 0.146 0.854 31 H 0.148 0.852 32 H 0.139 0.861 33 H 0.071 0.929 34 H 0.060 0.940 35 H 0.071 0.929 36 H 0.051 0.949 37 H 0.068 0.932 38 H 0.069 0.931 39 H 0.083 0.917 40 H 0.030 0.970 41 H 0.077 0.923 42 H 0.051 0.949 43 H 0.044 0.956 44 H 0.045 0.955 45 H 0.013 0.987 46 H 0.014 0.986 47 H 0.264 0.736 48 H 0.060 0.940 49 H 0.070 0.930 50 H 0.085 0.915 51 H 0.033 0.967 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.247 29.518 10.959 31.511 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C -0.118 4.118 3 C -0.139 4.139 4 C -0.141 4.141 5 C -0.143 4.143 6 C -0.115 4.115 7 C -0.165 4.165 8 C 0.030 3.970 9 O -0.248 6.248 10 C 0.004 3.996 11 C -0.071 4.071 12 N -0.262 5.262 13 C -0.058 4.058 14 C -0.133 4.133 15 C -0.088 4.088 16 C -0.043 4.043 17 C -0.555 4.555 18 H 0.053 0.947 19 C -0.195 4.195 20 N -0.595 5.595 21 Si 0.771 3.229 22 H -0.192 1.192 23 H -0.212 1.212 24 H -0.173 1.173 25 C -0.144 4.144 26 C -0.063 4.063 27 H 0.088 0.912 28 H 0.082 0.918 29 H 0.101 0.899 30 H 0.164 0.836 31 H 0.166 0.834 32 H 0.157 0.843 33 H 0.090 0.910 34 H 0.079 0.921 35 H 0.090 0.910 36 H 0.069 0.931 37 H 0.086 0.914 38 H 0.087 0.913 39 H 0.102 0.898 40 H 0.048 0.952 41 H 0.095 0.905 42 H 0.070 0.930 43 H 0.063 0.937 44 H 0.063 0.937 45 H 0.031 0.969 46 H 0.033 0.967 47 H 0.073 0.927 48 H 0.079 0.921 49 H 0.088 0.912 50 H 0.103 0.897 51 H 0.051 0.949 Dipole moment (debyes) X Y Z Total from point charges -1.037 29.497 10.351 31.278 hybrid contribution 0.202 -1.237 0.141 1.262 sum -0.835 28.260 10.492 30.156 Atomic orbital electron populations 1.20700 0.89767 1.03191 1.02698 1.20511 0.97670 0.92603 1.00967 1.21230 0.94583 0.97500 1.00623 1.21464 0.94420 0.98711 0.99473 1.21221 1.00768 0.91434 1.00846 1.20485 0.93367 0.96908 1.00754 1.20657 0.99558 0.93884 1.02389 1.18684 0.89948 0.85676 1.02688 1.86099 1.74433 1.34586 1.29659 1.22770 0.98891 0.93767 0.84163 1.22176 0.95205 0.90508 0.99182 1.61828 1.17517 1.14905 1.31997 1.21992 0.94911 0.91699 0.97235 1.21399 0.97065 0.97063 0.97772 1.20951 0.96111 0.95164 0.96554 1.19563 0.95389 0.94060 0.95243 1.21470 0.95881 1.06884 1.31287 0.94735 1.25991 1.03496 0.94695 0.95306 1.70070 1.38472 1.13693 1.37284 0.85707 0.79880 0.79685 0.77673 1.19177 1.21186 1.17328 1.21610 0.97617 0.95708 0.99435 1.22082 0.94070 0.97381 0.92816 0.91220 0.91779 0.89883 0.83634 0.83440 0.84317 0.91021 0.92072 0.90965 0.93099 0.91389 0.91286 0.89816 0.95182 0.90484 0.93012 0.93710 0.93655 0.96872 0.96749 0.92714 0.92081 0.91184 0.89674 0.94909 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.63 9.79 71.24 0.70 -0.93 16 2 C -0.12 -2.25 5.89 -19.77 -0.12 -2.37 16 3 C -0.12 -1.91 9.70 22.25 0.22 -1.69 16 4 C -0.12 -1.85 10.04 22.28 0.22 -1.63 16 5 C -0.12 -2.22 9.70 22.25 0.22 -2.00 16 6 C -0.11 -2.52 5.89 -19.77 -0.12 -2.63 16 7 C -0.11 -2.34 9.79 71.24 0.70 -1.64 16 8 C 0.07 1.70 5.67 22.51 0.13 1.83 16 9 O -0.33 -8.14 8.28 -92.46 -0.77 -8.90 16 10 C 0.08 1.53 5.88 71.99 0.42 1.95 16 11 C 0.06 1.15 5.39 86.31 0.47 1.62 16 12 N -0.54 -14.20 4.53 -896.36 -4.06 -18.27 16 13 C 0.07 2.08 5.43 86.33 0.47 2.55 16 14 C -0.10 -3.66 5.15 30.64 0.16 -3.50 16 15 C -0.07 -2.74 2.20 -10.72 -0.02 -2.76 16 16 C -0.01 -0.25 3.52 29.85 0.11 -0.14 16 17 C -0.52 -30.28 9.00 25.60 0.23 -30.05 16 18 H 0.03 2.21 7.33 -2.91 -0.02 2.19 16 19 C 0.00 0.07 5.47 84.66 0.46 0.53 16 20 N -0.95 -61.09 13.96 21.45 0.30 -60.79 16 21 Si 0.95 45.64 27.47 68.60 1.88 47.53 16 22 H -0.27 -12.29 7.11 99.48 0.71 -11.58 16 23 H -0.29 -13.56 7.11 99.48 0.71 -12.85 16 24 H -0.25 -11.32 6.54 99.48 0.65 -10.67 16 25 C -0.11 -3.31 5.38 30.65 0.16 -3.14 16 26 C 0.06 1.63 5.29 86.33 0.46 2.09 16 27 H 0.07 1.09 8.14 -2.39 -0.02 1.07 16 28 H 0.06 1.01 6.30 -2.39 -0.02 0.99 16 29 H 0.08 0.90 8.09 -2.39 -0.02 0.88 16 30 H 0.15 1.51 8.06 -2.91 -0.02 1.49 16 31 H 0.15 1.38 8.06 -2.91 -0.02 1.36 16 32 H 0.14 1.91 8.06 -2.91 -0.02 1.88 16 33 H 0.07 1.40 8.14 -2.38 -0.02 1.38 16 34 H 0.06 1.63 7.53 -2.39 -0.02 1.61 16 35 H 0.07 1.38 8.09 -2.39 -0.02 1.36 16 36 H 0.05 0.99 6.70 -2.39 -0.02 0.98 16 37 H 0.07 1.07 7.23 -2.38 -0.02 1.05 16 38 H 0.07 1.17 8.00 -2.39 -0.02 1.15 16 39 H 0.08 1.67 7.79 -2.38 -0.02 1.65 16 40 H 0.03 0.88 8.14 -2.39 -0.02 0.86 16 41 H 0.08 2.16 7.93 -2.38 -0.02 2.14 16 42 H 0.05 2.07 8.14 -2.39 -0.02 2.05 16 43 H 0.04 1.97 7.06 -2.39 -0.02 1.95 16 44 H 0.04 1.88 8.14 -2.39 -0.02 1.86 16 45 H 0.01 0.63 7.20 -2.38 -0.02 0.62 16 46 H 0.01 0.67 7.57 -2.39 -0.02 0.65 16 47 H 0.26 15.82 8.31 -92.71 -0.77 15.05 16 48 H 0.06 1.98 8.14 -2.39 -0.02 1.96 16 49 H 0.07 2.03 8.14 -2.38 -0.02 2.01 16 50 H 0.09 1.84 6.65 -2.38 -0.02 1.83 16 51 H 0.03 0.82 8.14 -2.39 -0.02 0.80 16 Total: -1.00 -69.69 395.24 3.03 -66.66 By element: Atomic # 1 Polarization: 14.88 SS G_CDS: 0.82 Total: 15.70 kcal Atomic # 6 Polarization: -46.79 SS G_CDS: 4.86 Total: -41.93 kcal Atomic # 7 Polarization: -75.29 SS G_CDS: -3.76 Total: -79.06 kcal Atomic # 8 Polarization: -8.14 SS G_CDS: -0.77 Total: -8.90 kcal Atomic # 14 Polarization: 45.64 SS G_CDS: 1.88 Total: 47.53 kcal Total: -69.69 3.03 -66.66 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000579105765.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.492 kcal (2) G-P(sol) polarization free energy of solvation -69.688 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.196 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.028 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.660 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.168 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds