Wall clock time and date at job start Tue Mar 31 2020 11:43:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50708 * 1 3 3 C 1.38294 * 119.96829 * 2 1 4 4 C 1.38247 * 120.10879 * 180.27912 * 3 2 1 5 5 C 1.38167 * 120.05447 * 359.44864 * 4 3 2 6 6 C 1.50694 * 120.02726 * 180.25109 * 5 4 3 7 7 C 1.38710 * 119.94519 * 0.57328 * 5 4 3 8 8 O 1.35893 * 120.05694 * 179.72209 * 7 5 4 9 9 C 1.42901 * 117.00214 * 179.97438 * 8 7 5 10 10 C 1.52997 * 109.47213 * 180.02562 * 9 8 7 11 11 N 1.46900 * 109.47119 * 62.32117 * 10 9 8 12 12 C 1.46842 * 111.00292 * 52.03412 * 11 10 9 13 13 C 1.53042 * 109.52454 * 185.84077 * 12 11 10 14 14 C 1.53124 * 109.27720 * 300.82399 * 13 12 11 15 15 C 1.52998 * 109.57570 * 177.58997 * 14 13 12 16 16 C 1.50701 * 109.46967 * 65.27940 * 15 14 13 17 17 H 1.08000 * 120.00273 * 0.02562 * 16 15 14 18 18 C 1.37879 * 119.99970 * 180.02562 * 16 15 14 19 19 N 1.31523 * 119.99922 * 0.02562 * 18 16 15 20 20 Si 1.86801 * 120.00166 * 180.02562 * 18 16 15 21 21 H 1.48498 * 109.47121 * 359.97438 * 20 18 16 22 22 H 1.48496 * 109.47042 * 120.00033 * 20 18 16 23 23 H 1.48497 * 109.46921 * 239.99718 * 20 18 16 24 24 C 1.53113 * 109.16230 * 57.64963 * 14 13 12 25 25 C 1.46853 * 110.99806 * 176.24742 * 11 10 9 26 26 C 1.38115 * 119.97396 * 180.02562 * 2 1 3 27 27 H 1.08999 * 109.47240 * 89.99690 * 1 2 3 28 28 H 1.09001 * 109.46310 * 209.99565 * 1 2 3 29 29 H 1.09000 * 109.46721 * 329.99123 * 1 2 3 30 30 H 1.07997 * 119.94447 * 0.02562 * 3 2 1 31 31 H 1.07994 * 119.96847 * 179.72719 * 4 3 2 32 32 H 1.08996 * 109.47785 * 270.32323 * 6 5 4 33 33 H 1.09002 * 109.47234 * 30.32600 * 6 5 4 34 34 H 1.09003 * 109.47385 * 150.32108 * 6 5 4 35 35 H 1.09005 * 109.46755 * 299.99617 * 9 8 7 36 36 H 1.08995 * 109.47399 * 59.99865 * 9 8 7 37 37 H 1.09001 * 109.47089 * 182.31436 * 10 9 8 38 38 H 1.08997 * 109.47256 * 302.31214 * 10 9 8 39 39 H 1.09001 * 109.46302 * 305.85277 * 12 11 10 40 40 H 1.09003 * 109.46022 * 65.82741 * 12 11 10 41 41 H 1.08994 * 109.50931 * 180.88048 * 13 12 11 42 42 H 1.09003 * 109.50131 * 60.75661 * 13 12 11 43 43 H 1.08999 * 109.52140 * 297.74563 * 14 13 12 44 44 H 1.08997 * 109.47294 * 185.28178 * 15 14 13 45 45 H 1.09003 * 109.46680 * 305.28549 * 15 14 13 46 46 H 0.97003 * 120.00081 * 180.02562 * 19 18 16 47 47 H 1.09007 * 109.50553 * 182.40662 * 24 14 13 48 48 H 1.09001 * 109.50644 * 62.28919 * 24 14 13 49 49 H 1.08995 * 109.46025 * 294.16873 * 25 11 10 50 50 H 1.09002 * 109.46423 * 54.15438 * 25 11 10 51 51 H 1.08001 * 120.03159 * 359.97417 * 26 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1979 1.1980 0.0000 4 6 3.5803 1.2014 -0.0058 5 6 4.2753 0.0073 -0.0002 6 6 5.7822 0.0117 -0.0008 7 6 3.5847 -1.1957 -0.0006 8 8 4.2659 -2.3716 -0.0008 9 6 3.4895 -3.5712 -0.0007 10 6 4.4233 -4.7832 -0.0002 11 7 5.2315 -4.7781 1.2265 12 6 4.3809 -4.6508 2.4166 13 6 5.2603 -4.5027 3.6604 14 6 6.1674 -5.7299 3.7871 15 6 7.0917 -5.5616 4.9946 16 6 6.2704 -5.5495 6.2581 17 1 5.1966 -5.6521 6.2052 18 6 6.8899 -5.4075 7.4817 19 7 8.1976 -5.2820 7.5461 20 14 5.8720 -5.3933 9.0479 21 1 4.4354 -5.5492 8.7060 22 1 6.2972 -6.5138 9.9247 23 1 6.0744 -4.1049 9.7580 24 6 7.0077 -5.8674 2.5146 25 6 6.0776 -5.9759 1.3041 26 6 2.1971 -1.1964 -0.0005 27 1 -0.3634 0.0001 -1.0276 28 1 -0.3632 -0.8901 0.5138 29 1 -0.3633 0.8899 0.5140 30 1 1.6565 2.1325 0.0004 31 1 4.1175 2.1383 -0.0103 32 1 6.1452 0.0135 -1.0285 33 1 6.1432 0.9024 0.5135 34 1 6.1484 -0.8775 0.5123 35 1 2.8609 -3.5971 0.8895 36 1 2.8606 -3.5971 -0.8905 37 1 3.8317 -5.6977 -0.0417 38 1 5.0804 -4.7359 -0.8686 39 1 3.7440 -3.7720 2.3155 40 1 3.7590 -5.5405 2.5154 41 1 4.6289 -4.4239 4.5453 42 1 5.8727 -3.6056 3.5684 43 1 5.5560 -6.6227 3.9181 44 1 7.7991 -6.3901 5.0290 45 1 7.6368 -4.6217 4.9066 46 1 8.6335 -5.1825 8.4069 47 1 7.6246 -6.7636 2.5809 48 1 7.6475 -4.9918 2.4046 49 1 5.4478 -6.8593 1.4081 50 1 6.6732 -6.0594 0.3950 51 1 1.6572 -2.1318 -0.0005 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000582418187.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:43:02 Heat of formation + Delta-G solvation = -36.069140 kcal Electronic energy + Delta-G solvation = -26835.507087 eV Core-core repulsion = 23312.856386 eV Total energy + Delta-G solvation = -3522.650701 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 317.210 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -40.41911 -38.89233 -37.56045 -34.71977 -33.82525 -32.39990 -30.61135 -30.21921 -29.38644 -29.30508 -27.17869 -24.93638 -24.26938 -23.08757 -22.66412 -21.47132 -20.93525 -20.33918 -18.89504 -17.63706 -16.55204 -16.23302 -16.15785 -15.66316 -15.08672 -14.67413 -14.53713 -14.42529 -14.03797 -13.90265 -13.57612 -13.44469 -13.22740 -13.03763 -12.96681 -12.72910 -12.54749 -12.26868 -11.99556 -11.91295 -11.81795 -11.50119 -11.45730 -11.31787 -11.09896 -10.85082 -10.78841 -10.72358 -10.60670 -10.53747 -10.22801 -9.88428 -9.48004 -9.00540 -8.83053 -8.81064 -8.29689 -8.08988 -8.04147 -5.94414 -3.95593 1.19771 1.37162 3.14779 3.33410 3.41004 3.44535 3.61677 4.04093 4.49995 4.55543 4.65341 4.78661 4.86579 4.92289 5.02535 5.07593 5.15937 5.29376 5.34687 5.39267 5.40922 5.43032 5.46241 5.56719 5.57706 5.59009 5.64133 5.71931 5.73312 5.77070 5.87908 5.90794 6.01467 6.16445 6.21671 6.25794 6.27668 6.41809 6.48068 6.48520 6.62364 6.70631 6.74596 7.02549 7.14564 7.24413 7.32224 7.40351 7.44786 7.74474 7.91564 8.06866 8.49999 9.11207 9.67695 11.16989 Molecular weight = 317.21amu Principal moments of inertia in cm(-1) A = 0.012664 B = 0.002949 C = 0.002704 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2210.382199 B = 9491.073611 C =10351.699230 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.056 4.056 3 C -0.161 4.161 4 C -0.081 4.081 5 C -0.120 4.120 6 C -0.106 4.106 7 C 0.138 3.862 8 O -0.288 6.288 9 C 0.059 3.941 10 C 0.056 3.944 11 N -0.527 5.527 12 C 0.051 3.949 13 C -0.098 4.098 14 C -0.081 4.081 15 C 0.028 3.972 16 C -0.513 4.513 17 H 0.055 0.945 18 C 0.055 3.945 19 N -0.896 5.896 20 Si 0.887 3.113 21 H -0.274 1.274 22 H -0.285 1.285 23 H -0.285 1.285 24 C -0.111 4.111 25 C 0.060 3.940 26 C -0.210 4.210 27 H 0.069 0.931 28 H 0.065 0.935 29 H 0.067 0.933 30 H 0.120 0.880 31 H 0.126 0.874 32 H 0.064 0.936 33 H 0.062 0.938 34 H 0.077 0.923 35 H 0.066 0.934 36 H 0.061 0.939 37 H 0.050 0.950 38 H 0.083 0.917 39 H 0.066 0.934 40 H 0.025 0.975 41 H 0.071 0.929 42 H 0.063 0.937 43 H 0.050 0.950 44 H 0.014 0.986 45 H 0.017 0.983 46 H 0.259 0.741 47 H 0.060 0.940 48 H 0.066 0.934 49 H 0.027 0.973 50 H 0.066 0.934 51 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.417 8.499 -20.073 25.086 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.056 4.056 3 C -0.179 4.179 4 C -0.099 4.099 5 C -0.121 4.121 6 C -0.163 4.163 7 C 0.092 3.908 8 O -0.201 6.201 9 C -0.017 4.017 10 C -0.072 4.072 11 N -0.253 5.253 12 C -0.076 4.076 13 C -0.135 4.135 14 C -0.099 4.099 15 C -0.009 4.009 16 C -0.551 4.551 17 H 0.073 0.927 18 C -0.145 4.145 19 N -0.536 5.536 20 Si 0.716 3.284 21 H -0.198 1.198 22 H -0.211 1.211 23 H -0.211 1.211 24 C -0.149 4.149 25 C -0.068 4.068 26 C -0.229 4.229 27 H 0.088 0.912 28 H 0.084 0.916 29 H 0.086 0.914 30 H 0.138 0.862 31 H 0.144 0.856 32 H 0.083 0.917 33 H 0.081 0.919 34 H 0.096 0.904 35 H 0.084 0.916 36 H 0.079 0.921 37 H 0.068 0.932 38 H 0.102 0.898 39 H 0.085 0.915 40 H 0.043 0.957 41 H 0.089 0.911 42 H 0.082 0.918 43 H 0.068 0.932 44 H 0.032 0.968 45 H 0.035 0.965 46 H 0.068 0.932 47 H 0.078 0.922 48 H 0.085 0.915 49 H 0.045 0.955 50 H 0.084 0.916 51 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -11.756 8.871 -19.963 24.808 hybrid contribution -1.339 -0.791 1.004 1.851 sum -13.095 8.080 -18.959 24.417 Atomic orbital electron populations 1.20797 0.91276 1.02825 1.02202 1.19652 0.95810 0.92599 0.97549 1.20866 0.94118 0.97322 1.05594 1.20861 0.93944 0.96848 0.98274 1.19291 0.96734 0.90277 1.05814 1.20614 0.90344 1.03284 1.02017 1.18885 0.90173 0.86226 0.95539 1.86225 1.34652 1.11474 1.87744 1.22970 0.94182 0.83418 1.01122 1.22128 0.95760 0.94227 0.95056 1.61960 1.22561 1.39637 1.01109 1.22297 0.95055 0.99282 0.90962 1.21518 0.97971 0.99314 0.94737 1.21230 0.97013 0.96563 0.95142 1.19116 0.94086 0.97053 0.90651 1.21294 0.93450 1.49077 0.91279 0.92715 1.25022 0.94828 0.95604 0.99075 1.69981 1.08210 1.50582 1.24800 0.86607 0.80518 0.77532 0.83772 1.19827 1.21134 1.21077 1.21682 0.97646 1.01694 0.93890 1.22107 0.95524 0.89711 0.99417 1.21084 0.92948 0.98737 1.10158 0.91203 0.91614 0.91424 0.86231 0.85584 0.91741 0.91914 0.90376 0.91578 0.92063 0.93225 0.89845 0.91523 0.95689 0.91062 0.91788 0.93175 0.96797 0.96487 0.93178 0.92167 0.91519 0.95494 0.91600 0.85796 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.86 10.01 36.01 0.36 -0.50 16 2 C -0.06 -0.58 5.88 -104.64 -0.62 -1.19 16 3 C -0.16 -1.62 9.70 -39.56 -0.38 -2.00 16 4 C -0.08 -0.86 9.70 -39.60 -0.38 -1.25 16 5 C -0.12 -1.48 5.89 -104.48 -0.62 -2.10 16 6 C -0.11 -1.21 9.79 36.00 0.35 -0.85 16 7 C 0.14 1.78 6.66 -39.21 -0.26 1.51 16 8 O -0.29 -3.87 9.09 -19.41 -0.18 -4.04 16 9 C 0.06 0.64 4.37 37.16 0.16 0.80 16 10 C 0.06 0.64 5.52 -3.83 -0.02 0.62 16 11 N -0.53 -7.74 4.67 -234.67 -1.10 -8.83 16 12 C 0.05 0.81 5.04 -3.83 -0.02 0.79 16 13 C -0.10 -1.89 5.15 -26.65 -0.14 -2.03 16 14 C -0.08 -1.67 2.20 -90.50 -0.20 -1.87 16 15 C 0.03 0.73 4.45 -27.88 -0.12 0.60 16 16 C -0.51 -14.47 8.45 -34.44 -0.29 -14.76 16 17 H 0.05 1.51 7.08 -52.49 -0.37 1.13 16 18 C 0.06 1.60 5.46 -17.82 -0.10 1.50 16 19 N -0.90 -27.24 13.29 55.43 0.74 -26.51 16 20 Si 0.89 21.88 29.54 -169.99 -5.02 16.86 16 21 H -0.27 -6.58 7.11 56.52 0.40 -6.18 16 22 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 23 H -0.28 -6.97 7.11 56.52 0.40 -6.56 16 24 C -0.11 -1.96 5.38 -26.65 -0.14 -2.11 16 25 C 0.06 0.88 5.46 -3.83 -0.02 0.86 16 26 C -0.21 -2.39 8.69 -39.43 -0.34 -2.73 16 27 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 28 H 0.06 0.47 8.08 -51.93 -0.42 0.05 16 29 H 0.07 0.44 8.08 -51.93 -0.42 0.02 16 30 H 0.12 0.94 8.06 -52.49 -0.42 0.52 16 31 H 0.13 1.06 8.06 -52.49 -0.42 0.63 16 32 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 33 H 0.06 0.62 8.09 -51.93 -0.42 0.20 16 34 H 0.08 1.03 7.53 -51.93 -0.39 0.64 16 35 H 0.07 0.73 5.57 -51.93 -0.29 0.44 16 36 H 0.06 0.54 7.66 -51.93 -0.40 0.14 16 37 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 38 H 0.08 0.90 8.14 -51.93 -0.42 0.48 16 39 H 0.07 1.00 5.79 -51.93 -0.30 0.70 16 40 H 0.02 0.38 8.14 -51.93 -0.42 -0.04 16 41 H 0.07 1.47 7.06 -51.93 -0.37 1.10 16 42 H 0.06 1.32 8.14 -51.93 -0.42 0.90 16 43 H 0.05 1.06 8.14 -51.93 -0.42 0.63 16 44 H 0.01 0.38 8.14 -51.93 -0.42 -0.04 16 45 H 0.02 0.47 8.14 -51.93 -0.42 0.05 16 46 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 47 H 0.06 1.03 8.14 -51.93 -0.42 0.60 16 48 H 0.07 1.24 8.14 -51.93 -0.42 0.81 16 49 H 0.03 0.39 8.14 -51.93 -0.42 -0.04 16 50 H 0.07 0.86 8.12 -51.93 -0.42 0.43 16 51 H 0.12 1.21 6.30 -52.49 -0.33 0.88 16 LS Contribution 397.19 15.07 5.99 5.99 Total: -1.00 -31.33 397.19 -11.53 -42.86 By element: Atomic # 1 Polarization: 7.56 SS G_CDS: -9.18 Total: -1.62 kcal Atomic # 6 Polarization: -21.92 SS G_CDS: -2.78 Total: -24.70 kcal Atomic # 7 Polarization: -34.98 SS G_CDS: -0.36 Total: -35.34 kcal Atomic # 8 Polarization: -3.87 SS G_CDS: -0.18 Total: -4.04 kcal Atomic # 14 Polarization: 21.88 SS G_CDS: -5.02 Total: 16.86 kcal Total LS contribution 5.99 Total: 5.99 kcal Total: -31.33 -11.53 -42.86 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000582418187.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.793 kcal (2) G-P(sol) polarization free energy of solvation -31.328 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.535 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.534 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.862 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.069 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds