Wall clock time and date at job start Tue Mar 31 2020 11:43:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50708 * 1 3 3 C 1.38294 * 119.96829 * 2 1 4 4 C 1.38247 * 120.10879 * 180.27912 * 3 2 1 5 5 C 1.38167 * 120.05447 * 359.44864 * 4 3 2 6 6 C 1.50694 * 120.02726 * 180.25109 * 5 4 3 7 7 C 1.38710 * 119.94519 * 0.57328 * 5 4 3 8 8 O 1.35893 * 120.05694 * 179.72209 * 7 5 4 9 9 C 1.42901 * 117.00214 * 179.97438 * 8 7 5 10 10 C 1.52997 * 109.47213 * 180.02562 * 9 8 7 11 11 N 1.46900 * 109.47119 * 62.32117 * 10 9 8 12 12 C 1.46842 * 111.00292 * 52.03412 * 11 10 9 13 13 C 1.53042 * 109.52454 * 185.84077 * 12 11 10 14 14 C 1.53124 * 109.27720 * 300.82399 * 13 12 11 15 15 C 1.52998 * 109.57570 * 177.58997 * 14 13 12 16 16 C 1.50701 * 109.46967 * 65.27940 * 15 14 13 17 17 H 1.08000 * 120.00273 * 0.02562 * 16 15 14 18 18 C 1.37879 * 119.99970 * 180.02562 * 16 15 14 19 19 N 1.31523 * 119.99922 * 0.02562 * 18 16 15 20 20 Si 1.86801 * 120.00166 * 180.02562 * 18 16 15 21 21 H 1.48498 * 109.47121 * 359.97438 * 20 18 16 22 22 H 1.48496 * 109.47042 * 120.00033 * 20 18 16 23 23 H 1.48497 * 109.46921 * 239.99718 * 20 18 16 24 24 C 1.53113 * 109.16230 * 57.64963 * 14 13 12 25 25 C 1.46853 * 110.99806 * 176.24742 * 11 10 9 26 26 C 1.38115 * 119.97396 * 180.02562 * 2 1 3 27 27 H 1.08999 * 109.47240 * 89.99690 * 1 2 3 28 28 H 1.09001 * 109.46310 * 209.99565 * 1 2 3 29 29 H 1.09000 * 109.46721 * 329.99123 * 1 2 3 30 30 H 1.07997 * 119.94447 * 0.02562 * 3 2 1 31 31 H 1.07994 * 119.96847 * 179.72719 * 4 3 2 32 32 H 1.08996 * 109.47785 * 270.32323 * 6 5 4 33 33 H 1.09002 * 109.47234 * 30.32600 * 6 5 4 34 34 H 1.09003 * 109.47385 * 150.32108 * 6 5 4 35 35 H 1.09005 * 109.46755 * 299.99617 * 9 8 7 36 36 H 1.08995 * 109.47399 * 59.99865 * 9 8 7 37 37 H 1.09001 * 109.47089 * 182.31436 * 10 9 8 38 38 H 1.08997 * 109.47256 * 302.31214 * 10 9 8 39 39 H 1.09001 * 109.46302 * 305.85277 * 12 11 10 40 40 H 1.09003 * 109.46022 * 65.82741 * 12 11 10 41 41 H 1.08994 * 109.50931 * 180.88048 * 13 12 11 42 42 H 1.09003 * 109.50131 * 60.75661 * 13 12 11 43 43 H 1.08999 * 109.52140 * 297.74563 * 14 13 12 44 44 H 1.08997 * 109.47294 * 185.28178 * 15 14 13 45 45 H 1.09003 * 109.46680 * 305.28549 * 15 14 13 46 46 H 0.97003 * 120.00081 * 180.02562 * 19 18 16 47 47 H 1.09007 * 109.50553 * 182.40662 * 24 14 13 48 48 H 1.09001 * 109.50644 * 62.28919 * 24 14 13 49 49 H 1.08995 * 109.46025 * 294.16873 * 25 11 10 50 50 H 1.09002 * 109.46423 * 54.15438 * 25 11 10 51 51 H 1.08001 * 120.03159 * 359.97417 * 26 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1979 1.1980 0.0000 4 6 3.5803 1.2014 -0.0058 5 6 4.2753 0.0073 -0.0002 6 6 5.7822 0.0117 -0.0008 7 6 3.5847 -1.1957 -0.0006 8 8 4.2659 -2.3716 -0.0008 9 6 3.4895 -3.5712 -0.0007 10 6 4.4233 -4.7832 -0.0002 11 7 5.2315 -4.7781 1.2265 12 6 4.3809 -4.6508 2.4166 13 6 5.2603 -4.5027 3.6604 14 6 6.1674 -5.7299 3.7871 15 6 7.0917 -5.5616 4.9946 16 6 6.2704 -5.5495 6.2581 17 1 5.1966 -5.6521 6.2052 18 6 6.8899 -5.4075 7.4817 19 7 8.1976 -5.2820 7.5461 20 14 5.8720 -5.3933 9.0479 21 1 4.4354 -5.5492 8.7060 22 1 6.2972 -6.5138 9.9247 23 1 6.0744 -4.1049 9.7580 24 6 7.0077 -5.8674 2.5146 25 6 6.0776 -5.9759 1.3041 26 6 2.1971 -1.1964 -0.0005 27 1 -0.3634 0.0001 -1.0276 28 1 -0.3632 -0.8901 0.5138 29 1 -0.3633 0.8899 0.5140 30 1 1.6565 2.1325 0.0004 31 1 4.1175 2.1383 -0.0103 32 1 6.1452 0.0135 -1.0285 33 1 6.1432 0.9024 0.5135 34 1 6.1484 -0.8775 0.5123 35 1 2.8609 -3.5971 0.8895 36 1 2.8606 -3.5971 -0.8905 37 1 3.8317 -5.6977 -0.0417 38 1 5.0804 -4.7359 -0.8686 39 1 3.7440 -3.7720 2.3155 40 1 3.7590 -5.5405 2.5154 41 1 4.6289 -4.4239 4.5453 42 1 5.8727 -3.6056 3.5684 43 1 5.5560 -6.6227 3.9181 44 1 7.7991 -6.3901 5.0290 45 1 7.6368 -4.6217 4.9066 46 1 8.6335 -5.1825 8.4069 47 1 7.6246 -6.7636 2.5809 48 1 7.6475 -4.9918 2.4046 49 1 5.4478 -6.8593 1.4081 50 1 6.6732 -6.0594 0.3950 51 1 1.6572 -2.1318 -0.0005 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000582418187.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:43:01 Heat of formation + Delta-G solvation = -52.451099 kcal Electronic energy + Delta-G solvation = -26836.217462 eV Core-core repulsion = 23312.856386 eV Total energy + Delta-G solvation = -3523.361076 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 317.210 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.27415 -40.11213 -38.50716 -36.26489 -34.72419 -34.28214 -31.91727 -31.34640 -30.53949 -30.04594 -28.79254 -26.02378 -25.56116 -24.45679 -23.80909 -22.72676 -21.91768 -21.50838 -20.44435 -18.51177 -18.42124 -17.53306 -17.06038 -16.56561 -16.46204 -16.09126 -15.78166 -15.48003 -15.14305 -14.99608 -14.79461 -14.57304 -14.39121 -14.07056 -13.99024 -13.87746 -13.73911 -13.45360 -13.35010 -13.12670 -13.03009 -12.72768 -12.62962 -12.60681 -12.39822 -12.24005 -12.16853 -12.10723 -12.01459 -11.69442 -11.61550 -11.55036 -11.24203 -10.84085 -10.69807 -10.52671 -9.61016 -9.16126 -8.92220 -8.17941 -6.27636 0.39142 0.54868 1.38144 1.38728 1.51574 2.31938 2.40945 2.80721 2.95732 3.15083 3.76591 3.86999 3.93191 3.98975 4.03815 4.12422 4.15854 4.18492 4.25061 4.34437 4.38045 4.41423 4.53654 4.56849 4.64913 4.72230 4.76533 4.78134 4.80885 4.82598 4.84377 4.85582 4.88946 4.92862 4.96280 5.09236 5.15819 5.18459 5.37752 5.40751 5.41122 5.43759 5.44165 5.57024 5.59523 5.69638 5.80461 5.88779 5.96354 6.18038 6.22563 6.30319 6.58501 6.88679 7.40680 8.94310 Molecular weight = 317.21amu Principal moments of inertia in cm(-1) A = 0.012664 B = 0.002949 C = 0.002704 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2210.382199 B = 9491.073611 C =10351.699230 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.063 4.063 3 C -0.166 4.166 4 C -0.086 4.086 5 C -0.147 4.147 6 C -0.100 4.100 7 C 0.116 3.884 8 O -0.310 6.310 9 C 0.056 3.944 10 C 0.059 3.941 11 N -0.545 5.545 12 C 0.065 3.935 13 C -0.092 4.092 14 C -0.073 4.073 15 C 0.034 3.966 16 C -0.528 4.528 17 H 0.060 0.940 18 C -0.004 4.004 19 N -0.936 5.936 20 Si 0.961 3.039 21 H -0.261 1.261 22 H -0.278 1.278 23 H -0.280 1.280 24 C -0.107 4.107 25 C 0.068 3.932 26 C -0.220 4.220 27 H 0.082 0.918 28 H 0.069 0.931 29 H 0.078 0.922 30 H 0.143 0.857 31 H 0.145 0.855 32 H 0.071 0.929 33 H 0.073 0.927 34 H 0.052 0.948 35 H 0.064 0.936 36 H 0.086 0.914 37 H 0.073 0.927 38 H 0.092 0.908 39 H 0.075 0.925 40 H 0.036 0.964 41 H 0.053 0.947 42 H 0.040 0.960 43 H 0.050 0.950 44 H -0.013 1.013 45 H -0.016 1.016 46 H 0.262 0.738 47 H 0.063 0.937 48 H 0.050 0.950 49 H 0.039 0.961 50 H 0.089 0.911 51 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.138 8.656 -21.262 27.499 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.063 4.063 3 C -0.184 4.184 4 C -0.104 4.104 5 C -0.147 4.147 6 C -0.157 4.157 7 C 0.070 3.930 8 O -0.223 6.223 9 C -0.019 4.019 10 C -0.069 4.069 11 N -0.270 5.270 12 C -0.062 4.062 13 C -0.130 4.130 14 C -0.091 4.091 15 C -0.003 4.003 16 C -0.566 4.566 17 H 0.078 0.922 18 C -0.201 4.201 19 N -0.577 5.577 20 Si 0.786 3.214 21 H -0.185 1.185 22 H -0.204 1.204 23 H -0.206 1.206 24 C -0.145 4.145 25 C -0.059 4.059 26 C -0.238 4.238 27 H 0.101 0.899 28 H 0.088 0.912 29 H 0.097 0.903 30 H 0.160 0.840 31 H 0.163 0.837 32 H 0.090 0.910 33 H 0.092 0.908 34 H 0.071 0.929 35 H 0.082 0.918 36 H 0.104 0.896 37 H 0.091 0.909 38 H 0.110 0.890 39 H 0.093 0.907 40 H 0.054 0.946 41 H 0.072 0.928 42 H 0.059 0.941 43 H 0.069 0.931 44 H 0.005 0.995 45 H 0.002 0.998 46 H 0.071 0.929 47 H 0.082 0.918 48 H 0.068 0.932 49 H 0.057 0.943 50 H 0.107 0.893 51 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -14.493 9.025 -21.173 27.199 hybrid contribution -0.457 -0.796 1.355 1.636 sum -14.950 8.229 -19.818 26.153 Atomic orbital electron populations 1.20846 0.89238 1.03586 1.03240 1.20060 0.97415 0.92337 0.96505 1.21219 0.94080 0.98362 1.04770 1.21147 0.94549 0.97058 0.97639 1.19554 0.97082 0.91038 1.07072 1.20543 0.90412 1.02475 1.02255 1.19142 0.90999 0.86227 0.96631 1.86191 1.35802 1.12240 1.88112 1.23088 0.94108 0.82526 1.02149 1.22221 0.95938 0.95375 0.93332 1.61878 1.23356 1.39907 1.01893 1.22066 0.94298 1.00192 0.89673 1.21378 0.97683 0.97534 0.96404 1.21072 0.96541 0.97141 0.94396 1.19005 0.94200 0.94130 0.92984 1.21676 0.93899 1.48733 0.92311 0.92194 1.25978 0.96022 0.95100 1.02964 1.70121 1.10122 1.51555 1.25884 0.85457 0.79243 0.77700 0.79028 1.18499 1.20390 1.20586 1.21594 0.97803 1.01117 0.94004 1.22016 0.95300 0.90175 0.98442 1.21299 0.92490 0.99841 1.10210 0.89912 0.91215 0.90345 0.83954 0.83706 0.91006 0.90850 0.92934 0.91827 0.89642 0.90919 0.89013 0.90710 0.94567 0.92820 0.94070 0.93127 0.99499 0.99754 0.92948 0.91836 0.93156 0.94308 0.89281 0.84563 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.40 10.01 71.24 0.71 -0.69 16 2 C -0.06 -1.18 5.88 -19.88 -0.12 -1.30 16 3 C -0.17 -3.04 9.70 22.29 0.22 -2.83 16 4 C -0.09 -1.74 9.70 22.25 0.22 -1.52 16 5 C -0.15 -3.59 5.89 -19.77 -0.12 -3.70 16 6 C -0.10 -2.33 9.79 71.23 0.70 -1.63 16 7 C 0.12 2.93 6.66 22.51 0.15 3.08 16 8 O -0.31 -8.16 9.09 -92.35 -0.84 -8.99 16 9 C 0.06 1.12 4.37 71.98 0.31 1.44 16 10 C 0.06 1.18 5.52 86.30 0.48 1.66 16 11 N -0.54 -15.15 4.67 -896.36 -4.19 -19.33 16 12 C 0.07 1.99 5.04 86.33 0.44 2.42 16 13 C -0.09 -3.65 5.15 30.65 0.16 -3.50 16 14 C -0.07 -3.10 2.20 -10.72 -0.02 -3.12 16 15 C 0.03 1.85 4.45 29.85 0.13 1.98 16 16 C -0.53 -30.63 8.45 25.60 0.22 -30.41 16 17 H 0.06 3.34 7.08 -2.91 -0.02 3.32 16 18 C 0.00 -0.21 5.46 84.65 0.46 0.25 16 19 N -0.94 -58.61 13.29 21.45 0.28 -58.32 16 20 Si 0.96 45.33 29.54 68.60 2.03 47.36 16 21 H -0.26 -11.68 7.11 99.48 0.71 -10.98 16 22 H -0.28 -12.76 7.11 99.48 0.71 -12.05 16 23 H -0.28 -12.94 7.11 99.48 0.71 -12.23 16 24 C -0.11 -3.82 5.38 30.64 0.16 -3.66 16 25 C 0.07 1.87 5.46 86.32 0.47 2.34 16 26 C -0.22 -4.70 8.69 22.37 0.19 -4.50 16 27 H 0.08 0.83 8.14 -2.39 -0.02 0.81 16 28 H 0.07 0.82 8.08 -2.39 -0.02 0.80 16 29 H 0.08 0.81 8.08 -2.39 -0.02 0.79 16 30 H 0.14 1.86 8.06 -2.91 -0.02 1.84 16 31 H 0.15 2.21 8.06 -2.91 -0.02 2.19 16 32 H 0.07 1.49 8.14 -2.39 -0.02 1.47 16 33 H 0.07 1.47 8.09 -2.39 -0.02 1.45 16 34 H 0.05 1.46 7.53 -2.39 -0.02 1.45 16 35 H 0.06 1.28 5.57 -2.38 -0.01 1.27 16 36 H 0.09 1.28 7.66 -2.39 -0.02 1.26 16 37 H 0.07 1.18 8.14 -2.39 -0.02 1.16 16 38 H 0.09 1.73 8.14 -2.39 -0.02 1.71 16 39 H 0.07 2.17 5.79 -2.39 -0.01 2.16 16 40 H 0.04 1.03 8.14 -2.39 -0.02 1.01 16 41 H 0.05 2.27 7.06 -2.39 -0.02 2.25 16 42 H 0.04 1.78 8.14 -2.39 -0.02 1.76 16 43 H 0.05 2.14 8.14 -2.39 -0.02 2.12 16 44 H -0.01 -0.79 8.14 -2.39 -0.02 -0.81 16 45 H -0.02 -0.96 8.14 -2.39 -0.02 -0.98 16 46 H 0.26 15.36 8.31 -92.71 -0.77 14.59 16 47 H 0.06 2.18 8.14 -2.38 -0.02 2.16 16 48 H 0.05 1.93 8.14 -2.39 -0.02 1.91 16 49 H 0.04 0.99 8.14 -2.39 -0.02 0.98 16 50 H 0.09 2.07 8.12 -2.39 -0.02 2.05 16 51 H 0.14 2.42 6.30 -2.91 -0.02 2.40 16 Total: -1.00 -70.05 397.19 2.92 -67.13 By element: Atomic # 1 Polarization: 14.97 SS G_CDS: 0.87 Total: 15.85 kcal Atomic # 6 Polarization: -48.44 SS G_CDS: 4.76 Total: -43.68 kcal Atomic # 7 Polarization: -73.76 SS G_CDS: -3.90 Total: -77.66 kcal Atomic # 8 Polarization: -8.16 SS G_CDS: -0.84 Total: -8.99 kcal Atomic # 14 Polarization: 45.33 SS G_CDS: 2.03 Total: 47.36 kcal Total: -70.05 2.92 -67.13 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000582418187.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.676 kcal (2) G-P(sol) polarization free energy of solvation -70.049 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.373 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.922 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.127 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.451 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds