Wall clock time and date at job start Tue Mar 31 2020 11:10:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86801 * 119.99912 * 2 1 4 4 H 1.48496 * 109.47360 * 179.97438 * 3 2 1 5 5 H 1.48509 * 109.46752 * 299.99780 * 3 2 1 6 6 H 1.48502 * 109.47163 * 59.99281 * 3 2 1 7 7 C 1.37874 * 120.00081 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99880 * 180.02562 * 7 2 1 9 9 C 1.50696 * 119.99982 * 0.02562 * 7 2 1 10 10 C 1.53004 * 109.47177 * 179.97438 * 9 7 2 11 11 C 1.53118 * 109.52635 * 175.00172 * 10 9 7 12 12 C 1.53035 * 109.28139 * 177.62478 * 11 10 9 13 13 N 1.46852 * 109.51938 * 300.81799 * 12 11 10 14 14 C 1.46896 * 110.99971 * 185.84389 * 13 12 11 15 15 C 1.53002 * 109.47250 * 170.00051 * 14 13 12 16 16 C 1.52996 * 109.46972 * 179.97438 * 15 14 13 17 17 C 1.53002 * 109.46969 * 179.97438 * 16 15 14 18 18 O 1.42905 * 109.47079 * 179.97438 * 17 16 15 19 19 C 1.35905 * 116.99842 * 180.02562 * 18 17 16 20 20 C 1.38729 * 120.05486 * 359.72976 * 19 18 17 21 21 C 1.38146 * 119.94131 * 179.74173 * 20 19 18 22 22 C 1.38261 * 120.05612 * 0.50778 * 21 20 19 23 23 C 1.38262 * 120.11084 * 359.77089 * 22 21 20 24 24 C 1.38145 * 120.05938 * 359.97279 * 23 22 21 25 25 C 1.46843 * 111.19961 * 61.73958 * 13 12 11 26 26 C 1.53038 * 109.52550 * 298.26011 * 25 13 12 27 27 H 0.96997 * 120.00119 * 0.02562 * 1 2 3 28 28 H 1.08997 * 109.47550 * 59.99745 * 9 7 2 29 29 H 1.09004 * 109.47341 * 299.99339 * 9 7 2 30 30 H 1.09001 * 109.52550 * 54.86983 * 10 9 7 31 31 H 1.08996 * 109.50424 * 57.67210 * 11 10 9 32 32 H 1.09010 * 109.49611 * 297.56081 * 11 10 9 33 33 H 1.08995 * 109.46151 * 180.80479 * 12 11 10 34 34 H 1.08998 * 109.45581 * 60.82122 * 12 11 10 35 35 H 1.08996 * 109.47530 * 49.99373 * 14 13 12 36 36 H 1.09000 * 109.46698 * 289.99703 * 14 13 12 37 37 H 1.08996 * 109.47407 * 59.99247 * 15 14 13 38 38 H 1.09000 * 109.46986 * 299.99475 * 15 14 13 39 39 H 1.09004 * 109.47298 * 59.99824 * 16 15 14 40 40 H 1.09004 * 109.47552 * 299.99695 * 16 15 14 41 41 H 1.09004 * 109.46930 * 59.99996 * 17 16 15 42 42 H 1.09000 * 109.47312 * 299.99939 * 17 16 15 43 43 H 1.08000 * 120.03286 * 359.97438 * 20 19 18 44 44 H 1.08005 * 119.97238 * 180.27362 * 21 20 19 45 45 H 1.08001 * 119.94699 * 179.74310 * 22 21 20 46 46 H 1.07999 * 119.97562 * 180.02562 * 23 22 21 47 47 H 1.07990 * 120.03151 * 179.97438 * 24 23 22 48 48 H 1.09004 * 109.45939 * 58.27496 * 25 13 12 49 49 H 1.09003 * 109.46006 * 178.24135 * 25 13 12 50 50 H 1.09000 * 109.50177 * 299.23654 * 26 25 13 51 51 H 1.08997 * 109.50071 * 179.11977 * 26 25 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3465 0.0006 5 1 1.8903 2.3964 -1.2126 6 1 1.8902 2.3966 1.2124 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2510 -2.4991 0.0005 10 6 2.2453 -3.6620 0.0005 11 6 1.4852 -4.9853 0.1263 12 6 2.4795 -6.1470 0.0661 13 7 3.2112 -6.1011 -1.2063 14 6 4.0754 -7.2791 -1.3594 15 6 4.6255 -7.3262 -2.7863 16 6 5.5261 -8.5527 -2.9454 17 6 6.0757 -8.6002 -4.3725 18 8 6.9174 -9.7455 -4.5210 19 6 7.4904 -9.9364 -5.7385 20 6 7.2431 -9.0429 -6.7706 21 6 7.8310 -9.2362 -8.0056 22 6 8.6569 -10.3248 -8.2166 23 6 8.9003 -11.2198 -7.1913 24 6 8.3191 -11.0281 -5.9529 25 6 3.9865 -4.8601 -1.3287 26 6 3.0371 -3.6599 -1.3101 27 1 -0.4850 0.8400 -0.0004 28 1 0.6247 -2.5571 -0.8896 29 1 0.6241 -2.5567 0.8904 30 1 2.9314 -3.5548 0.8407 31 1 0.7715 -5.0742 -0.6927 32 1 0.9533 -5.0103 1.0775 33 1 1.9400 -7.0910 0.1410 34 1 3.1844 -6.0647 0.8934 35 1 3.4973 -8.1820 -1.1628 36 1 4.9030 -7.2167 -0.6528 37 1 5.2036 -6.4233 -2.9828 38 1 3.7979 -7.3886 -3.4929 39 1 4.9482 -9.4558 -2.7488 40 1 6.3538 -8.4900 -2.2389 41 1 6.6535 -7.6971 -4.5696 42 1 5.2479 -8.6632 -5.0788 43 1 6.5945 -8.1949 -6.6076 44 1 7.6423 -8.5385 -8.8082 45 1 9.1123 -10.4765 -9.1841 46 1 9.5461 -12.0692 -7.3584 47 1 8.5092 -11.7277 -5.1525 48 1 4.6843 -4.7841 -0.4948 49 1 4.5415 -4.8696 -2.2668 50 1 2.3478 -3.7281 -2.1518 51 1 3.6141 -2.7383 -1.3852 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000583869636.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:10:48 Heat of formation + Delta-G solvation = -41.841642 kcal Electronic energy + Delta-G solvation = -25292.419189 eV Core-core repulsion = 21769.518174 eV Total energy + Delta-G solvation = -3522.901015 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 317.210 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -40.42455 -38.89591 -37.84321 -35.60335 -33.68408 -32.14381 -31.36020 -30.44946 -30.19714 -28.77740 -26.94483 -24.44606 -23.32870 -22.87361 -22.64678 -21.74613 -21.05372 -20.46375 -18.90275 -18.52389 -16.67193 -16.47046 -16.25423 -16.12630 -15.59806 -15.22851 -14.76986 -14.50625 -14.42329 -14.07212 -13.80763 -13.63053 -13.53219 -13.11274 -13.06473 -12.67300 -12.35390 -12.14590 -12.04079 -11.91729 -11.77718 -11.59253 -11.29506 -11.18642 -11.07625 -11.01400 -10.78209 -10.76416 -10.62732 -10.51588 -10.23821 -9.91165 -9.50839 -9.37700 -9.02627 -8.85292 -8.55431 -8.31950 -8.08679 -5.96539 -3.97877 0.96758 1.09103 2.81336 3.31766 3.39492 3.43013 3.43268 4.06747 4.42518 4.48073 4.51066 4.55461 4.64229 4.76679 4.91346 4.93039 5.01642 5.02369 5.17896 5.22712 5.30577 5.38413 5.40174 5.46330 5.47384 5.55310 5.63197 5.65320 5.66464 5.77137 5.90169 5.93201 5.95846 6.04588 6.04698 6.08979 6.16734 6.17557 6.27260 6.41673 6.46925 6.59570 6.69145 6.99894 7.08901 7.12216 7.21443 7.35798 7.40140 7.72285 7.88881 8.04539 8.47773 9.08993 9.65571 11.14817 Molecular weight = 317.21amu Principal moments of inertia in cm(-1) A = 0.019634 B = 0.001780 C = 0.001667 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1425.786449 B =15730.726473 C =16795.409273 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C 0.055 3.945 3 Si 0.888 3.112 4 H -0.274 1.274 5 H -0.285 1.285 6 H -0.285 1.285 7 C -0.513 4.513 8 H 0.055 0.945 9 C 0.027 3.973 10 C -0.082 4.082 11 C -0.112 4.112 12 C 0.060 3.940 13 N -0.538 5.538 14 C 0.057 3.943 15 C -0.114 4.114 16 C -0.116 4.116 17 C 0.060 3.940 18 O -0.317 6.317 19 C 0.132 3.868 20 C -0.210 4.210 21 C -0.080 4.080 22 C -0.163 4.163 23 C -0.082 4.082 24 C -0.156 4.156 25 C 0.053 3.947 26 C -0.100 4.100 27 H 0.259 0.741 28 H 0.017 0.983 29 H 0.014 0.986 30 H 0.050 0.950 31 H 0.065 0.935 32 H 0.060 0.940 33 H 0.065 0.935 34 H 0.027 0.973 35 H 0.071 0.929 36 H 0.030 0.970 37 H 0.067 0.933 38 H 0.075 0.925 39 H 0.074 0.926 40 H 0.072 0.928 41 H 0.063 0.937 42 H 0.064 0.936 43 H 0.129 0.871 44 H 0.124 0.876 45 H 0.122 0.878 46 H 0.128 0.872 47 H 0.129 0.871 48 H 0.026 0.974 49 H 0.067 0.933 50 H 0.062 0.938 51 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.182 -22.708 -12.101 29.876 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.535 5.535 2 C -0.145 4.145 3 Si 0.716 3.284 4 H -0.198 1.198 5 H -0.211 1.211 6 H -0.211 1.211 7 C -0.552 4.552 8 H 0.073 0.927 9 C -0.009 4.009 10 C -0.100 4.100 11 C -0.150 4.150 12 C -0.068 4.068 13 N -0.262 5.262 14 C -0.071 4.071 15 C -0.152 4.152 16 C -0.154 4.154 17 C -0.015 4.015 18 O -0.230 6.230 19 C 0.087 3.913 20 C -0.228 4.228 21 C -0.098 4.098 22 C -0.181 4.181 23 C -0.100 4.100 24 C -0.175 4.175 25 C -0.074 4.074 26 C -0.138 4.138 27 H 0.068 0.932 28 H 0.035 0.965 29 H 0.032 0.968 30 H 0.069 0.931 31 H 0.084 0.916 32 H 0.078 0.922 33 H 0.083 0.917 34 H 0.045 0.955 35 H 0.090 0.910 36 H 0.048 0.952 37 H 0.086 0.914 38 H 0.093 0.907 39 H 0.093 0.907 40 H 0.091 0.909 41 H 0.081 0.919 42 H 0.082 0.918 43 H 0.147 0.853 44 H 0.142 0.858 45 H 0.140 0.860 46 H 0.146 0.854 47 H 0.147 0.853 48 H 0.044 0.956 49 H 0.085 0.915 50 H 0.081 0.919 51 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 14.691 -22.698 -12.281 29.697 hybrid contribution 0.935 1.220 0.530 1.626 sum 15.627 -21.478 -11.752 29.045 Atomic orbital electron populations 1.69974 1.06011 1.26318 1.51244 1.25021 0.94802 0.99131 0.95579 0.86601 0.80121 0.84134 0.77520 1.19822 1.21092 1.21131 1.21297 0.92951 0.91043 1.49893 0.92679 1.19123 0.93637 0.91071 0.97119 1.21236 0.97881 0.94781 0.96134 1.21693 0.97542 0.94273 1.01476 1.22094 0.96264 0.99389 0.89025 1.61933 1.27916 1.01766 1.34619 1.22017 0.95307 0.94123 0.95636 1.21506 0.98970 0.96857 0.97842 1.21507 0.99867 0.99722 0.94324 1.22891 0.92914 0.86840 0.98875 1.86059 1.60982 1.46529 1.29457 1.19061 0.93236 0.94531 0.84479 1.21338 1.05588 1.01676 0.94246 1.20992 0.95401 0.97108 0.96304 1.21076 1.01325 0.96133 0.99557 1.20978 0.98127 0.98786 0.92125 1.20474 1.00350 0.98065 0.98564 1.22262 0.95359 0.90085 0.99740 1.21546 0.97846 0.95515 0.98851 0.93170 0.96507 0.96771 0.93121 0.91604 0.92167 0.91687 0.95476 0.91030 0.95201 0.91412 0.90659 0.90735 0.90923 0.91875 0.91763 0.85321 0.85754 0.85957 0.85432 0.85263 0.95570 0.91458 0.91891 0.90976 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.99 13.29 55.43 0.74 -26.26 16 2 C 0.06 1.59 5.46 -17.82 -0.10 1.49 16 3 Si 0.89 21.68 29.54 -169.99 -5.02 16.65 16 4 H -0.27 -6.52 7.11 56.52 0.40 -6.12 16 5 H -0.28 -6.89 7.11 56.52 0.40 -6.49 16 6 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 7 C -0.51 -14.35 8.45 -34.44 -0.29 -14.64 16 8 H 0.05 1.50 7.08 -52.49 -0.37 1.13 16 9 C 0.03 0.71 4.45 -27.88 -0.12 0.58 16 10 C -0.08 -1.67 2.20 -90.49 -0.20 -1.87 16 11 C -0.11 -1.95 5.38 -26.65 -0.14 -2.09 16 12 C 0.06 0.88 5.46 -3.83 -0.02 0.85 16 13 N -0.54 -7.62 4.66 -234.67 -1.09 -8.72 16 14 C 0.06 0.64 4.96 -3.83 -0.02 0.62 16 15 C -0.11 -1.07 5.14 -26.73 -0.14 -1.21 16 16 C -0.12 -0.96 5.58 -26.73 -0.15 -1.11 16 17 C 0.06 0.50 4.74 37.16 0.18 0.68 16 18 O -0.32 -3.24 10.14 -19.44 -0.20 -3.44 16 19 C 0.13 1.30 6.69 -39.22 -0.26 1.03 16 20 C -0.21 -1.83 9.04 -39.43 -0.36 -2.19 16 21 C -0.08 -0.61 10.04 -39.61 -0.40 -1.01 16 22 C -0.16 -1.16 10.04 -39.56 -0.40 -1.55 16 23 C -0.08 -0.59 10.04 -39.61 -0.40 -0.99 16 24 C -0.16 -1.35 9.99 -39.43 -0.39 -1.74 16 25 C 0.05 0.80 5.29 -3.84 -0.02 0.78 16 26 C -0.10 -1.87 5.15 -26.65 -0.14 -2.00 16 27 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16 28 H 0.02 0.46 8.14 -51.93 -0.42 0.03 16 29 H 0.01 0.38 8.14 -51.93 -0.42 -0.04 16 30 H 0.05 1.06 8.14 -51.93 -0.42 0.64 16 31 H 0.07 1.19 8.14 -51.93 -0.42 0.77 16 32 H 0.06 1.02 8.14 -51.92 -0.42 0.60 16 33 H 0.06 0.84 8.01 -51.93 -0.42 0.42 16 34 H 0.03 0.40 8.14 -51.93 -0.42 -0.03 16 35 H 0.07 0.74 7.99 -51.93 -0.41 0.32 16 36 H 0.03 0.33 8.12 -51.93 -0.42 -0.09 16 37 H 0.07 0.66 6.43 -51.93 -0.33 0.32 16 38 H 0.07 0.74 8.14 -51.93 -0.42 0.31 16 39 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 40 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 41 H 0.06 0.49 7.67 -51.93 -0.40 0.10 16 42 H 0.06 0.49 7.65 -51.93 -0.40 0.10 16 43 H 0.13 0.97 6.30 -52.49 -0.33 0.64 16 44 H 0.12 0.70 8.06 -52.48 -0.42 0.28 16 45 H 0.12 0.61 8.06 -52.49 -0.42 0.19 16 46 H 0.13 0.60 8.06 -52.49 -0.42 0.18 16 47 H 0.13 0.96 8.06 -52.49 -0.42 0.54 16 48 H 0.03 0.40 8.14 -51.93 -0.42 -0.02 16 49 H 0.07 0.91 6.21 -51.93 -0.32 0.59 16 50 H 0.06 1.23 8.14 -51.93 -0.42 0.80 16 51 H 0.07 1.44 7.06 -51.93 -0.37 1.07 16 LS Contribution 399.67 15.07 6.02 6.02 Total: -1.00 -30.82 399.67 -12.17 -42.99 By element: Atomic # 1 Polarization: 6.36 SS G_CDS: -9.25 Total: -2.89 kcal Atomic # 6 Polarization: -21.00 SS G_CDS: -3.37 Total: -24.37 kcal Atomic # 7 Polarization: -34.62 SS G_CDS: -0.36 Total: -34.97 kcal Atomic # 8 Polarization: -3.24 SS G_CDS: -0.20 Total: -3.44 kcal Atomic # 14 Polarization: 21.68 SS G_CDS: -5.02 Total: 16.65 kcal Total LS contribution 6.02 Total: 6.02 kcal Total: -30.82 -12.17 -42.99 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000583869636.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.147 kcal (2) G-P(sol) polarization free energy of solvation -30.819 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.672 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.170 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.989 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.842 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds