Wall clock time and date at job start Tue Mar 31 2020 11:10:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86801 * 119.99912 * 2 1 4 4 H 1.48496 * 109.47360 * 179.97438 * 3 2 1 5 5 H 1.48509 * 109.46752 * 299.99780 * 3 2 1 6 6 H 1.48502 * 109.47163 * 59.99281 * 3 2 1 7 7 C 1.37874 * 120.00081 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99880 * 180.02562 * 7 2 1 9 9 C 1.50696 * 119.99982 * 0.02562 * 7 2 1 10 10 C 1.53004 * 109.47177 * 179.97438 * 9 7 2 11 11 C 1.53118 * 109.52635 * 175.00172 * 10 9 7 12 12 C 1.53035 * 109.28139 * 177.62478 * 11 10 9 13 13 N 1.46852 * 109.51938 * 300.81799 * 12 11 10 14 14 C 1.46896 * 110.99971 * 185.84389 * 13 12 11 15 15 C 1.53002 * 109.47250 * 170.00051 * 14 13 12 16 16 C 1.52996 * 109.46972 * 179.97438 * 15 14 13 17 17 C 1.53002 * 109.46969 * 179.97438 * 16 15 14 18 18 O 1.42905 * 109.47079 * 179.97438 * 17 16 15 19 19 C 1.35905 * 116.99842 * 180.02562 * 18 17 16 20 20 C 1.38729 * 120.05486 * 359.72976 * 19 18 17 21 21 C 1.38146 * 119.94131 * 179.74173 * 20 19 18 22 22 C 1.38261 * 120.05612 * 0.50778 * 21 20 19 23 23 C 1.38262 * 120.11084 * 359.77089 * 22 21 20 24 24 C 1.38145 * 120.05938 * 359.97279 * 23 22 21 25 25 C 1.46843 * 111.19961 * 61.73958 * 13 12 11 26 26 C 1.53038 * 109.52550 * 298.26011 * 25 13 12 27 27 H 0.96997 * 120.00119 * 0.02562 * 1 2 3 28 28 H 1.08997 * 109.47550 * 59.99745 * 9 7 2 29 29 H 1.09004 * 109.47341 * 299.99339 * 9 7 2 30 30 H 1.09001 * 109.52550 * 54.86983 * 10 9 7 31 31 H 1.08996 * 109.50424 * 57.67210 * 11 10 9 32 32 H 1.09010 * 109.49611 * 297.56081 * 11 10 9 33 33 H 1.08995 * 109.46151 * 180.80479 * 12 11 10 34 34 H 1.08998 * 109.45581 * 60.82122 * 12 11 10 35 35 H 1.08996 * 109.47530 * 49.99373 * 14 13 12 36 36 H 1.09000 * 109.46698 * 289.99703 * 14 13 12 37 37 H 1.08996 * 109.47407 * 59.99247 * 15 14 13 38 38 H 1.09000 * 109.46986 * 299.99475 * 15 14 13 39 39 H 1.09004 * 109.47298 * 59.99824 * 16 15 14 40 40 H 1.09004 * 109.47552 * 299.99695 * 16 15 14 41 41 H 1.09004 * 109.46930 * 59.99996 * 17 16 15 42 42 H 1.09000 * 109.47312 * 299.99939 * 17 16 15 43 43 H 1.08000 * 120.03286 * 359.97438 * 20 19 18 44 44 H 1.08005 * 119.97238 * 180.27362 * 21 20 19 45 45 H 1.08001 * 119.94699 * 179.74310 * 22 21 20 46 46 H 1.07999 * 119.97562 * 180.02562 * 23 22 21 47 47 H 1.07990 * 120.03151 * 179.97438 * 24 23 22 48 48 H 1.09004 * 109.45939 * 58.27496 * 25 13 12 49 49 H 1.09003 * 109.46006 * 178.24135 * 25 13 12 50 50 H 1.09000 * 109.50177 * 299.23654 * 26 25 13 51 51 H 1.08997 * 109.50071 * 179.11977 * 26 25 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3465 0.0006 5 1 1.8903 2.3964 -1.2126 6 1 1.8902 2.3966 1.2124 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2510 -2.4991 0.0005 10 6 2.2453 -3.6620 0.0005 11 6 1.4852 -4.9853 0.1263 12 6 2.4795 -6.1470 0.0661 13 7 3.2112 -6.1011 -1.2063 14 6 4.0754 -7.2791 -1.3594 15 6 4.6255 -7.3262 -2.7863 16 6 5.5261 -8.5527 -2.9454 17 6 6.0757 -8.6002 -4.3725 18 8 6.9174 -9.7455 -4.5210 19 6 7.4904 -9.9364 -5.7385 20 6 7.2431 -9.0429 -6.7706 21 6 7.8310 -9.2362 -8.0056 22 6 8.6569 -10.3248 -8.2166 23 6 8.9003 -11.2198 -7.1913 24 6 8.3191 -11.0281 -5.9529 25 6 3.9865 -4.8601 -1.3287 26 6 3.0371 -3.6599 -1.3101 27 1 -0.4850 0.8400 -0.0004 28 1 0.6247 -2.5571 -0.8896 29 1 0.6241 -2.5567 0.8904 30 1 2.9314 -3.5548 0.8407 31 1 0.7715 -5.0742 -0.6927 32 1 0.9533 -5.0103 1.0775 33 1 1.9400 -7.0910 0.1410 34 1 3.1844 -6.0647 0.8934 35 1 3.4973 -8.1820 -1.1628 36 1 4.9030 -7.2167 -0.6528 37 1 5.2036 -6.4233 -2.9828 38 1 3.7979 -7.3886 -3.4929 39 1 4.9482 -9.4558 -2.7488 40 1 6.3538 -8.4900 -2.2389 41 1 6.6535 -7.6971 -4.5696 42 1 5.2479 -8.6632 -5.0788 43 1 6.5945 -8.1949 -6.6076 44 1 7.6423 -8.5385 -8.8082 45 1 9.1123 -10.4765 -9.1841 46 1 9.5461 -12.0692 -7.3584 47 1 8.5092 -11.7277 -5.1525 48 1 4.6843 -4.7841 -0.4948 49 1 4.5415 -4.8696 -2.2668 50 1 2.3478 -3.7281 -2.1518 51 1 3.6141 -2.7383 -1.3852 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000583869636.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:10:47 Heat of formation + Delta-G solvation = -57.336245 kcal Electronic energy + Delta-G solvation = -25293.091086 eV Core-core repulsion = 21769.518174 eV Total energy + Delta-G solvation = -3523.572912 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 317.210 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.04283 -40.14396 -38.47076 -36.82258 -35.14392 -33.82251 -31.96184 -31.72599 -30.97492 -30.06759 -28.27508 -25.89669 -24.37748 -24.13009 -23.38726 -22.66305 -22.06454 -21.60566 -20.43298 -19.14555 -18.42650 -17.34548 -17.12627 -16.90157 -16.61864 -16.41932 -16.14743 -15.53431 -15.31541 -15.08200 -15.02919 -14.75117 -14.45191 -14.30805 -14.17881 -13.89161 -13.69441 -13.26156 -13.15240 -13.02177 -12.87833 -12.68399 -12.54106 -12.45466 -12.32923 -12.19012 -12.01311 -11.98663 -11.81578 -11.68091 -11.59203 -11.46612 -11.21319 -10.82369 -10.68421 -10.52052 -9.95098 -9.19900 -9.16803 -8.17493 -6.27106 0.39439 0.49649 1.38981 1.39258 1.52205 2.17520 2.41400 2.85296 3.01653 3.15662 3.79999 3.88496 3.93454 4.00619 4.03050 4.07564 4.10791 4.25372 4.26356 4.30247 4.34446 4.40490 4.51018 4.52911 4.58465 4.61757 4.66704 4.72838 4.74739 4.78523 4.86219 4.87224 4.94663 5.00592 5.09247 5.10928 5.18384 5.29083 5.34686 5.38249 5.40210 5.43386 5.46674 5.49218 5.58320 5.61060 5.81597 5.87747 5.89738 6.19846 6.26283 6.31992 6.46073 6.89281 7.41283 8.94579 Molecular weight = 317.21amu Principal moments of inertia in cm(-1) A = 0.019634 B = 0.001780 C = 0.001667 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1425.786449 B =15730.726473 C =16795.409273 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C -0.003 4.003 3 Si 0.961 3.039 4 H -0.262 1.262 5 H -0.279 1.279 6 H -0.280 1.280 7 C -0.529 4.529 8 H 0.060 0.940 9 C 0.033 3.967 10 C -0.076 4.076 11 C -0.108 4.108 12 C 0.067 3.933 13 N -0.548 5.548 14 C 0.058 3.942 15 C -0.106 4.106 16 C -0.107 4.107 17 C 0.059 3.941 18 O -0.332 6.332 19 C 0.108 3.892 20 C -0.223 4.223 21 C -0.089 4.089 22 C -0.166 4.166 23 C -0.084 4.084 24 C -0.172 4.172 25 C 0.063 3.937 26 C -0.095 4.095 27 H 0.262 0.738 28 H -0.012 1.012 29 H -0.015 1.015 30 H 0.046 0.954 31 H 0.055 0.945 32 H 0.060 0.940 33 H 0.089 0.911 34 H 0.031 0.969 35 H 0.084 0.916 36 H 0.035 0.965 37 H 0.065 0.935 38 H 0.072 0.928 39 H 0.077 0.923 40 H 0.072 0.928 41 H 0.066 0.934 42 H 0.069 0.931 43 H 0.135 0.865 44 H 0.143 0.857 45 H 0.145 0.855 46 H 0.152 0.848 47 H 0.134 0.866 48 H 0.028 0.972 49 H 0.087 0.913 50 H 0.049 0.951 51 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.253 -23.785 -13.010 32.135 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.576 5.576 2 C -0.200 4.200 3 Si 0.786 3.214 4 H -0.186 1.186 5 H -0.205 1.205 6 H -0.206 1.206 7 C -0.567 4.567 8 H 0.078 0.922 9 C -0.004 4.004 10 C -0.094 4.094 11 C -0.145 4.145 12 C -0.061 4.061 13 N -0.273 5.273 14 C -0.069 4.069 15 C -0.144 4.144 16 C -0.145 4.145 17 C -0.016 4.016 18 O -0.247 6.247 19 C 0.063 3.937 20 C -0.241 4.241 21 C -0.107 4.107 22 C -0.184 4.184 23 C -0.102 4.102 24 C -0.190 4.190 25 C -0.064 4.064 26 C -0.133 4.133 27 H 0.070 0.930 28 H 0.006 0.994 29 H 0.004 0.996 30 H 0.064 0.936 31 H 0.074 0.926 32 H 0.079 0.921 33 H 0.107 0.893 34 H 0.049 0.951 35 H 0.102 0.898 36 H 0.053 0.947 37 H 0.084 0.916 38 H 0.091 0.909 39 H 0.096 0.904 40 H 0.091 0.909 41 H 0.085 0.915 42 H 0.087 0.913 43 H 0.152 0.848 44 H 0.160 0.840 45 H 0.163 0.837 46 H 0.170 0.830 47 H 0.152 0.848 48 H 0.046 0.954 49 H 0.105 0.895 50 H 0.068 0.932 51 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 16.777 -23.795 -13.194 31.964 hybrid contribution 0.260 1.525 0.778 1.732 sum 17.037 -22.269 -12.416 30.665 Atomic orbital electron populations 1.70111 1.07781 1.27464 1.52242 1.25963 0.95711 1.03232 0.95108 0.85457 0.79161 0.79127 0.77657 1.18552 1.20501 1.20586 1.21682 0.93373 0.92138 1.49490 0.92189 1.19017 0.94028 0.93101 0.94253 1.21095 0.96908 0.94370 0.97068 1.21603 0.97891 0.93930 1.01122 1.22013 0.95795 0.98791 0.89504 1.61901 1.28683 1.02347 1.34347 1.22095 0.95158 0.93010 0.96659 1.21411 0.98942 0.97285 0.96767 1.21391 0.99592 0.99232 0.94265 1.22928 0.92990 0.86639 0.99036 1.86017 1.61460 1.47199 1.30009 1.19335 0.94194 0.95494 0.84655 1.21518 1.06094 1.01892 0.94615 1.21311 0.95232 0.97745 0.96408 1.21437 1.00810 0.95641 1.00538 1.21320 0.97896 0.99487 0.91513 1.20731 1.00648 0.98137 0.99531 1.22100 0.94356 0.89034 1.00937 1.21422 0.97874 0.96891 0.97077 0.92969 0.99377 0.99644 0.93588 0.92648 0.92109 0.89297 0.95051 0.89751 0.94690 0.91591 0.90912 0.90439 0.90918 0.91547 0.91308 0.84758 0.83953 0.83676 0.83020 0.84792 0.95356 0.89473 0.93249 0.92638 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -57.81 13.29 21.45 0.28 -57.52 16 2 C 0.00 -0.17 5.46 84.65 0.46 0.29 16 3 Si 0.96 44.79 29.54 68.60 2.03 46.82 16 4 H -0.26 -11.58 7.11 99.48 0.71 -10.87 16 5 H -0.28 -12.71 7.11 99.48 0.71 -12.00 16 6 H -0.28 -12.77 7.11 99.48 0.71 -12.06 16 7 C -0.53 -30.24 8.45 25.60 0.22 -30.02 16 8 H 0.06 3.30 7.08 -2.91 -0.02 3.28 16 9 C 0.03 1.77 4.45 29.85 0.13 1.91 16 10 C -0.08 -3.16 2.20 -10.71 -0.02 -3.18 16 11 C -0.11 -3.74 5.38 30.65 0.16 -3.58 16 12 C 0.07 1.82 5.46 86.32 0.47 2.29 16 13 N -0.55 -14.42 4.66 -896.37 -4.17 -18.59 16 14 C 0.06 1.14 4.96 86.30 0.43 1.56 16 15 C -0.11 -1.77 5.14 30.59 0.16 -1.61 16 16 C -0.11 -1.57 5.58 30.59 0.17 -1.40 16 17 C 0.06 0.92 4.74 71.98 0.34 1.26 16 18 O -0.33 -6.63 10.14 -92.49 -0.94 -7.57 16 19 C 0.11 2.07 6.69 22.51 0.15 2.22 16 20 C -0.22 -3.72 9.04 22.37 0.20 -3.52 16 21 C -0.09 -1.23 10.04 22.25 0.22 -1.01 16 22 C -0.17 -2.04 10.04 22.28 0.22 -1.81 16 23 C -0.08 -1.08 10.04 22.25 0.22 -0.85 16 24 C -0.17 -2.85 9.99 22.37 0.22 -2.63 16 25 C 0.06 1.82 5.29 86.33 0.46 2.28 16 26 C -0.09 -3.56 5.15 30.65 0.16 -3.40 16 27 H 0.26 15.17 8.31 -92.71 -0.77 14.40 16 28 H -0.01 -0.71 8.14 -2.39 -0.02 -0.73 16 29 H -0.01 -0.87 8.14 -2.39 -0.02 -0.89 16 30 H 0.05 1.95 8.14 -2.39 -0.02 1.93 16 31 H 0.05 2.02 8.14 -2.39 -0.02 2.01 16 32 H 0.06 2.07 8.14 -2.38 -0.02 2.05 16 33 H 0.09 2.04 8.01 -2.39 -0.02 2.02 16 34 H 0.03 0.84 8.14 -2.39 -0.02 0.82 16 35 H 0.08 1.46 7.99 -2.39 -0.02 1.45 16 36 H 0.03 0.67 8.12 -2.39 -0.02 0.65 16 37 H 0.07 1.13 6.43 -2.39 -0.02 1.12 16 38 H 0.07 1.27 8.14 -2.39 -0.02 1.25 16 39 H 0.08 1.10 8.14 -2.38 -0.02 1.08 16 40 H 0.07 1.08 8.14 -2.39 -0.02 1.06 16 41 H 0.07 0.97 7.67 -2.38 -0.02 0.95 16 42 H 0.07 0.99 7.65 -2.39 -0.02 0.97 16 43 H 0.13 1.94 6.30 -2.91 -0.02 1.92 16 44 H 0.14 1.34 8.06 -2.91 -0.02 1.31 16 45 H 0.15 1.04 8.06 -2.91 -0.02 1.02 16 46 H 0.15 1.08 8.06 -2.91 -0.02 1.06 16 47 H 0.13 1.94 8.06 -2.92 -0.02 1.92 16 48 H 0.03 0.81 8.14 -2.38 -0.02 0.79 16 49 H 0.09 2.18 6.21 -2.39 -0.01 2.16 16 50 H 0.05 1.96 8.14 -2.39 -0.02 1.94 16 51 H 0.05 2.23 7.06 -2.39 -0.02 2.21 16 Total: -1.00 -67.68 399.67 2.45 -65.24 By element: Atomic # 1 Polarization: 11.96 SS G_CDS: 0.86 Total: 12.83 kcal Atomic # 6 Polarization: -45.58 SS G_CDS: 4.38 Total: -41.20 kcal Atomic # 7 Polarization: -72.23 SS G_CDS: -3.89 Total: -76.12 kcal Atomic # 8 Polarization: -6.63 SS G_CDS: -0.94 Total: -7.57 kcal Atomic # 14 Polarization: 44.79 SS G_CDS: 2.03 Total: 46.82 kcal Total: -67.68 2.45 -65.24 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000583869636.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.903 kcal (2) G-P(sol) polarization free energy of solvation -67.685 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.781 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.445 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.239 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.336 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds