Wall clock time and date at job start Tue Mar 31 2020 12:24:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52996 * 109.47185 * 2 1 4 4 C 1.53002 * 109.46807 * 180.02562 * 3 2 1 5 5 C 1.52998 * 109.46978 * 180.02562 * 4 3 2 6 6 C 1.50695 * 109.47123 * 180.02562 * 5 4 3 7 7 C 1.38287 * 119.92657 * 270.31444 * 6 5 4 8 8 C 1.38118 * 120.06716 * 180.27633 * 7 6 5 9 9 C 1.38874 * 119.92887 * 359.42718 * 8 7 6 10 10 N 1.39923 * 120.06578 * 180.29339 * 9 8 7 11 11 C 1.34784 * 119.99354 * 144.91266 * 10 9 8 12 12 O 1.21283 * 119.99989 * 4.62666 * 11 10 9 13 13 C 1.50703 * 119.99893 * 184.62204 * 11 10 9 14 14 C 1.52999 * 109.47164 * 180.02562 * 13 11 10 15 15 C 1.53005 * 109.46782 * 180.02562 * 14 13 11 16 16 C 1.53005 * 109.46741 * 179.97438 * 15 14 13 17 17 C 1.50695 * 109.46969 * 179.97438 * 16 15 14 18 18 H 1.07994 * 120.00279 * 0.02562 * 17 16 15 19 19 C 1.37879 * 120.00023 * 180.02562 * 17 16 15 20 20 N 1.31506 * 120.00205 * 179.97438 * 19 17 16 21 21 Si 1.86804 * 119.99748 * 0.02562 * 19 17 16 22 22 H 1.48504 * 109.47263 * 90.00173 * 21 19 17 23 23 H 1.48498 * 109.47080 * 209.99854 * 21 19 17 24 24 H 1.48501 * 109.47064 * 329.99987 * 21 19 17 25 25 C 1.38872 * 119.85875 * 0.28010 * 9 8 7 26 26 C 1.38106 * 119.92759 * 359.97438 * 25 9 8 27 27 H 1.08998 * 109.46711 * 300.00041 * 1 2 3 28 28 H 1.08996 * 109.47238 * 59.99767 * 1 2 3 29 29 H 1.08996 * 109.47255 * 180.02562 * 1 2 3 30 30 H 1.08998 * 109.46711 * 239.99959 * 2 1 3 31 31 H 1.09001 * 109.47158 * 120.00715 * 2 1 3 32 32 H 1.08998 * 109.47330 * 60.00337 * 3 2 1 33 33 H 1.08996 * 109.47223 * 300.00243 * 3 2 1 34 34 H 1.08998 * 109.47182 * 59.99902 * 4 3 2 35 35 H 1.09005 * 109.47257 * 299.99696 * 4 3 2 36 36 H 1.08998 * 109.47527 * 59.99767 * 5 4 3 37 37 H 1.09010 * 109.47029 * 299.99922 * 5 4 3 38 38 H 1.08000 * 119.96888 * 0.02562 * 7 6 5 39 39 H 1.08003 * 120.03200 * 179.69943 * 8 7 6 40 40 H 0.96992 * 120.00802 * 324.91917 * 10 9 8 41 41 H 1.09001 * 109.47127 * 300.00552 * 13 11 10 42 42 H 1.09001 * 109.47129 * 59.99993 * 13 11 10 43 43 H 1.09003 * 109.46494 * 299.99828 * 14 13 11 44 44 H 1.08993 * 109.47329 * 59.99996 * 14 13 11 45 45 H 1.08990 * 109.47075 * 299.99377 * 15 14 13 46 46 H 1.08999 * 109.46836 * 60.00182 * 15 14 13 47 47 H 1.09005 * 109.47046 * 300.00218 * 16 15 14 48 48 H 1.09006 * 109.46826 * 59.99985 * 16 15 14 49 49 H 0.97004 * 120.00671 * 180.02562 * 20 19 17 50 50 H 1.08003 * 120.02986 * 180.02562 * 25 9 8 51 51 H 1.08008 * 119.95999 * 180.02562 * 26 25 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 3.5701 1.4424 -0.0006 5 6 4.0801 2.8848 0.0000 6 6 5.5871 2.8848 -0.0013 7 6 6.2780 2.8773 1.1966 8 6 7.6592 2.8829 1.1989 9 6 8.3540 2.8842 -0.0035 10 7 9.7532 2.8837 -0.0046 11 6 10.4261 2.2137 -0.9611 12 8 9.8217 1.6815 -1.8680 13 6 11.9295 2.1257 -0.9037 14 6 12.4390 1.3171 -2.0984 15 6 13.9653 1.2273 -2.0397 16 6 14.4748 0.4181 -3.2341 17 6 15.9781 0.3302 -3.1767 18 1 16.5163 0.8037 -2.3690 19 6 16.6665 -0.3548 -4.1554 20 7 17.9784 -0.4311 -4.1056 21 14 15.7357 -1.1733 -5.5530 22 1 15.5871 -0.2145 -6.6773 23 1 16.4878 -2.3669 -6.0165 24 1 14.3922 -1.5892 -5.0762 25 6 7.6572 2.8856 -1.2048 26 6 6.2761 2.8852 -1.2002 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5138 -0.8899 29 1 -0.3633 -1.0276 0.0005 30 1 1.8933 -0.5138 -0.8900 31 1 1.8934 -0.5139 0.8899 32 1 1.6768 1.9563 0.8900 33 1 1.6767 1.9563 -0.8899 34 1 3.9330 0.9286 -0.8908 35 1 3.9338 0.9284 0.8892 36 1 3.7172 3.3982 0.8904 37 1 3.7164 3.3992 -0.8896 38 1 5.7371 2.8710 2.1314 39 1 8.1982 2.8820 2.1348 40 1 10.2390 3.3655 0.6830 41 1 12.3537 3.1293 -0.9372 42 1 12.2297 1.6352 0.0222 43 1 12.0148 0.3135 -2.0652 44 1 12.1389 1.8080 -3.0241 45 1 14.3898 2.2306 -2.0726 46 1 14.2650 0.7361 -1.1140 47 1 14.0502 -0.5853 -3.2008 48 1 14.1750 0.9090 -4.1600 49 1 18.4629 -0.9127 -4.7944 50 1 8.1948 2.8861 -2.1415 51 1 5.7336 2.8858 -2.1341 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000588147202.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:24:39 Heat of formation + Delta-G solvation = -63.773599 kcal Electronic energy + Delta-G solvation = -24611.313434 eV Core-core repulsion = 21087.461377 eV Total energy + Delta-G solvation = -3523.852056 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 317.210 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -40.69943 -39.01456 -36.70746 -35.29449 -34.89654 -32.96229 -32.53432 -31.13840 -30.46574 -29.38495 -26.70187 -25.56482 -23.36652 -22.99243 -22.11441 -21.38999 -20.98198 -20.25482 -20.04502 -17.91037 -17.05679 -16.56319 -16.23358 -15.99548 -15.75312 -15.12608 -14.62104 -14.31468 -14.22286 -14.11372 -14.02030 -13.94630 -13.66801 -13.49967 -12.95355 -12.67012 -12.46978 -12.39129 -12.27745 -12.09715 -12.02987 -11.77340 -11.51483 -11.35420 -11.17145 -11.14446 -11.00763 -10.87644 -10.76716 -10.56752 -10.32772 -9.96461 -9.82951 -9.66100 -9.46010 -9.13057 -9.10486 -8.49924 -8.20584 -6.01066 -3.98666 1.04939 1.22195 2.51708 2.91065 3.34869 3.42030 3.47879 3.57487 4.30982 4.46152 4.49609 4.57470 4.58851 4.69060 4.76527 4.82155 4.87484 5.05756 5.11022 5.15193 5.18819 5.22341 5.22780 5.33852 5.36642 5.39440 5.42392 5.50873 5.53444 5.64535 5.66493 5.70484 5.81620 5.83875 5.91619 5.98638 5.99325 6.08564 6.11470 6.17126 6.32031 6.38750 6.44404 6.65039 6.78791 6.86581 6.97124 7.21844 7.36721 7.49579 7.84044 8.02866 8.57587 9.03836 9.62306 11.12419 Molecular weight = 317.21amu Principal moments of inertia in cm(-1) A = 0.018887 B = 0.001692 C = 0.001587 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1482.127157 B =16540.286188 C =17643.359935 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.127 4.127 3 C -0.120 4.120 4 C -0.116 4.116 5 C -0.077 4.077 6 C -0.102 4.102 7 C -0.100 4.100 8 C -0.146 4.146 9 C 0.144 3.856 10 N -0.681 5.681 11 C 0.512 3.488 12 O -0.517 6.517 13 C -0.138 4.138 14 C -0.107 4.107 15 C -0.103 4.103 16 C -0.015 4.015 17 C -0.520 4.520 18 H 0.071 0.929 19 C 0.065 3.935 20 N -0.906 5.906 21 Si 0.879 3.121 22 H -0.277 1.277 23 H -0.288 1.288 24 H -0.265 1.265 25 C -0.119 4.119 26 C -0.099 4.099 27 H 0.053 0.947 28 H 0.053 0.947 29 H 0.053 0.947 30 H 0.061 0.939 31 H 0.061 0.939 32 H 0.061 0.939 33 H 0.061 0.939 34 H 0.064 0.936 35 H 0.063 0.937 36 H 0.069 0.931 37 H 0.070 0.930 38 H 0.123 0.877 39 H 0.124 0.876 40 H 0.411 0.589 41 H 0.096 0.904 42 H 0.096 0.904 43 H 0.064 0.936 44 H 0.064 0.936 45 H 0.053 0.947 46 H 0.053 0.947 47 H 0.016 0.984 48 H 0.011 0.989 49 H 0.262 0.738 50 H 0.139 0.861 51 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -32.937 8.685 13.505 36.642 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.164 4.164 3 C -0.158 4.158 4 C -0.153 4.153 5 C -0.114 4.114 6 C -0.103 4.103 7 C -0.119 4.119 8 C -0.166 4.166 9 C 0.050 3.950 10 N -0.327 5.327 11 C 0.301 3.699 12 O -0.391 6.391 13 C -0.177 4.177 14 C -0.145 4.145 15 C -0.140 4.140 16 C -0.053 4.053 17 C -0.558 4.558 18 H 0.089 0.911 19 C -0.135 4.135 20 N -0.545 5.545 21 Si 0.707 3.293 22 H -0.203 1.203 23 H -0.214 1.214 24 H -0.189 1.189 25 C -0.139 4.139 26 C -0.118 4.118 27 H 0.072 0.928 28 H 0.072 0.928 29 H 0.072 0.928 30 H 0.080 0.920 31 H 0.079 0.921 32 H 0.079 0.921 33 H 0.080 0.920 34 H 0.083 0.917 35 H 0.082 0.918 36 H 0.088 0.912 37 H 0.089 0.911 38 H 0.141 0.859 39 H 0.142 0.858 40 H 0.246 0.754 41 H 0.114 0.886 42 H 0.114 0.886 43 H 0.083 0.917 44 H 0.083 0.917 45 H 0.072 0.928 46 H 0.072 0.928 47 H 0.034 0.966 48 H 0.029 0.971 49 H 0.072 0.928 50 H 0.157 0.843 51 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -33.133 8.190 12.735 36.429 hybrid contribution 0.017 -0.231 -0.349 0.419 sum -33.117 7.959 12.386 36.242 Atomic orbital electron populations 1.21780 0.95966 1.01585 1.01718 1.21545 0.95766 0.96990 1.02139 1.21638 0.95321 0.96788 1.02007 1.21612 0.95003 0.96106 1.02603 1.20571 0.90859 0.97295 1.02697 1.19851 0.95634 1.01655 0.93118 1.20772 0.93231 1.00283 0.97583 1.20890 0.94553 1.04737 0.96437 1.17816 0.82837 1.00317 0.94035 1.43712 1.04598 1.52628 1.31748 1.21317 0.91104 0.76674 0.80809 1.90698 1.70136 1.44886 1.33381 1.21804 0.89309 1.03702 1.02921 1.21504 0.97403 0.99733 0.95850 1.21478 0.91579 1.00609 1.00357 1.19577 0.96944 0.95193 0.93568 1.21181 0.89947 1.33846 1.10860 0.91095 1.25033 0.94713 0.95891 0.97890 1.69915 1.06505 1.43111 1.34963 0.86782 0.80541 0.79284 0.82738 1.20316 1.21433 1.18914 1.21336 0.94131 1.00344 0.98083 1.20947 0.93596 0.99607 0.97613 0.92834 0.92787 0.92829 0.91989 0.92058 0.92051 0.92002 0.91734 0.91847 0.91186 0.91136 0.85945 0.85807 0.75378 0.88613 0.88594 0.91694 0.91688 0.92795 0.92781 0.96611 0.97052 0.92805 0.84279 0.85931 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.77 9.91 37.16 0.37 -0.40 16 2 C -0.13 -0.72 5.93 -26.73 -0.16 -0.87 16 3 C -0.12 -0.66 5.21 -26.73 -0.14 -0.80 16 4 C -0.12 -0.75 5.20 -26.73 -0.14 -0.89 16 5 C -0.08 -0.50 5.34 -27.89 -0.15 -0.65 16 6 C -0.10 -0.90 5.14 -104.59 -0.54 -1.43 16 7 C -0.10 -0.85 9.69 -39.61 -0.38 -1.23 16 8 C -0.15 -1.32 9.97 -39.39 -0.39 -1.71 16 9 C 0.14 1.60 6.30 -83.69 -0.53 1.07 16 10 N -0.68 -6.86 5.34 -9.86 -0.05 -6.91 16 11 C 0.51 6.66 7.67 -10.98 -0.08 6.58 16 12 O -0.52 -8.71 13.42 5.55 0.07 -8.63 16 13 C -0.14 -1.65 5.70 -27.88 -0.16 -1.81 16 14 C -0.11 -1.75 4.50 -26.73 -0.12 -1.87 16 15 C -0.10 -1.99 5.15 -26.73 -0.14 -2.12 16 16 C -0.02 -0.38 4.04 -27.88 -0.11 -0.49 16 17 C -0.52 -15.11 9.66 -34.44 -0.33 -15.44 16 18 H 0.07 2.19 7.99 -52.49 -0.42 1.77 16 19 C 0.07 1.95 5.47 -17.82 -0.10 1.85 16 20 N -0.91 -28.36 13.96 55.43 0.77 -27.59 16 21 Si 0.88 22.35 27.47 -169.99 -4.67 17.68 16 22 H -0.28 -6.92 7.11 56.52 0.40 -6.52 16 23 H -0.29 -7.22 7.11 56.52 0.40 -6.82 16 24 H -0.26 -6.53 6.54 56.52 0.37 -6.16 16 25 C -0.12 -1.45 8.70 -39.40 -0.34 -1.79 16 26 C -0.10 -1.01 9.69 -39.61 -0.38 -1.39 16 27 H 0.05 0.25 8.14 -51.93 -0.42 -0.17 16 28 H 0.05 0.26 8.14 -51.93 -0.42 -0.16 16 29 H 0.05 0.26 8.14 -51.93 -0.42 -0.17 16 30 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 31 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 32 H 0.06 0.31 8.14 -51.93 -0.42 -0.11 16 33 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 34 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 35 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 36 H 0.07 0.39 8.09 -51.93 -0.42 -0.03 16 37 H 0.07 0.43 8.08 -51.92 -0.42 0.01 16 38 H 0.12 0.77 8.06 -52.49 -0.42 0.35 16 39 H 0.12 0.85 8.06 -52.48 -0.42 0.43 16 40 H 0.41 2.70 8.82 -40.82 -0.36 2.34 16 41 H 0.10 0.96 8.14 -51.93 -0.42 0.53 16 42 H 0.10 0.98 8.14 -51.93 -0.42 0.56 16 43 H 0.06 1.13 8.10 -51.93 -0.42 0.71 16 44 H 0.06 1.11 8.10 -51.93 -0.42 0.69 16 45 H 0.05 1.01 8.14 -51.93 -0.42 0.59 16 46 H 0.05 1.02 8.14 -51.93 -0.42 0.60 16 47 H 0.02 0.39 7.20 -51.93 -0.37 0.01 16 48 H 0.01 0.27 7.57 -51.93 -0.39 -0.12 16 49 H 0.26 7.68 8.31 -40.82 -0.34 7.34 16 50 H 0.14 1.93 6.22 -52.48 -0.33 1.60 16 51 H 0.12 1.07 8.06 -52.48 -0.42 0.65 16 LS Contribution 412.72 15.07 6.22 6.22 Total: -1.00 -33.89 412.72 -10.97 -44.86 By element: Atomic # 1 Polarization: 7.26 SS G_CDS: -9.49 Total: -2.23 kcal Atomic # 6 Polarization: -19.58 SS G_CDS: -3.83 Total: -23.41 kcal Atomic # 7 Polarization: -35.22 SS G_CDS: 0.72 Total: -34.50 kcal Atomic # 8 Polarization: -8.71 SS G_CDS: 0.07 Total: -8.63 kcal Atomic # 14 Polarization: 22.35 SS G_CDS: -4.67 Total: 17.68 kcal Total LS contribution 6.22 Total: 6.22 kcal Total: -33.89 -10.97 -44.86 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000588147202.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.911 kcal (2) G-P(sol) polarization free energy of solvation -33.894 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.805 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.968 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.863 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.774 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds