Wall clock time and date at job start Tue Mar 31 2020 12:05:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52998 * 109.47062 * 2 1 4 4 C 1.50696 * 109.47383 * 119.99852 * 2 1 3 5 5 C 1.38238 * 119.99728 * 120.00184 * 4 2 1 6 6 C 1.38235 * 120.00108 * 180.02562 * 5 4 2 7 7 C 1.38243 * 119.99617 * 0.02562 * 6 5 4 8 8 C 1.50706 * 119.99586 * 179.97438 * 7 6 5 9 9 C 1.53000 * 109.47116 * 89.99867 * 8 7 6 10 10 N 1.46496 * 109.47378 * 179.97438 * 9 8 7 11 11 C 1.34776 * 120.00347 * 179.97438 * 10 9 8 12 12 O 1.21281 * 119.99879 * 0.02562 * 11 10 9 13 13 C 1.50696 * 120.00079 * 180.02562 * 11 10 9 14 14 C 1.53000 * 109.47110 * 180.02562 * 13 11 10 15 15 C 1.52996 * 109.47213 * 180.02562 * 14 13 11 16 16 C 1.53000 * 109.47213 * 179.97438 * 15 14 13 17 17 C 1.50706 * 109.47112 * 179.97438 * 16 15 14 18 18 H 1.07997 * 120.00013 * 0.02562 * 17 16 15 19 19 C 1.37877 * 119.99843 * 179.97438 * 17 16 15 20 20 N 1.31516 * 120.00058 * 0.02562 * 19 17 16 21 21 Si 1.86800 * 119.99806 * 180.02562 * 19 17 16 22 22 H 1.48501 * 109.47057 * 90.00275 * 21 19 17 23 23 H 1.48508 * 109.47034 * 210.00302 * 21 19 17 24 24 H 1.48500 * 109.47389 * 330.00294 * 21 19 17 25 25 C 1.38233 * 120.00248 * 0.25361 * 7 6 5 26 26 C 1.38234 * 120.00209 * 300.02591 * 4 2 1 27 27 H 1.09001 * 109.46954 * 299.99809 * 1 2 3 28 28 H 1.09001 * 109.47412 * 59.99879 * 1 2 3 29 29 H 1.09003 * 109.46938 * 179.97438 * 1 2 3 30 30 H 1.09001 * 109.46954 * 240.00191 * 2 1 3 31 31 H 1.09001 * 109.47293 * 180.02562 * 3 2 1 32 32 H 1.09001 * 109.47105 * 300.00308 * 3 2 1 33 33 H 1.09001 * 109.47080 * 60.00267 * 3 2 1 34 34 H 1.08000 * 120.00578 * 359.97438 * 5 4 2 35 35 H 1.07999 * 120.00165 * 179.97438 * 6 5 4 36 36 H 1.09000 * 109.46646 * 209.99280 * 8 7 6 37 37 H 1.09000 * 109.47248 * 329.99998 * 8 7 6 38 38 H 1.09000 * 109.47214 * 300.00167 * 9 8 7 39 39 H 1.09008 * 109.47142 * 59.99333 * 9 8 7 40 40 H 0.97001 * 119.99484 * 0.02562 * 10 9 8 41 41 H 1.09000 * 109.47543 * 300.00434 * 13 11 10 42 42 H 1.09000 * 109.46926 * 60.00402 * 13 11 10 43 43 H 1.09005 * 109.47322 * 299.99831 * 14 13 11 44 44 H 1.08991 * 109.47114 * 60.00075 * 14 13 11 45 45 H 1.09008 * 109.47046 * 299.99946 * 15 14 13 46 46 H 1.09003 * 109.47659 * 60.00123 * 15 14 13 47 47 H 1.08997 * 109.47467 * 299.99763 * 16 15 14 48 48 H 1.09000 * 109.46955 * 59.99998 * 16 15 14 49 49 H 0.97000 * 119.99660 * 179.97438 * 20 19 17 50 50 H 1.08004 * 119.99934 * 179.72684 * 25 7 6 51 51 H 1.07999 * 120.00005 * 359.97438 * 26 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0324 -0.7103 1.2304 5 6 2.8272 -1.8342 1.1035 6 6 3.2876 -2.4862 2.2321 7 6 2.9528 -2.0145 3.4877 8 6 3.4543 -2.7257 4.7182 9 6 4.8018 -2.1336 5.1358 10 7 5.2891 -2.8244 6.3322 11 6 6.4666 -2.4688 6.8832 12 8 7.1226 -1.5766 6.3887 13 6 6.9681 -3.1799 8.1136 14 6 8.3155 -2.5877 8.5313 15 6 8.8250 -3.3100 9.7801 16 6 10.1728 -2.7183 10.1974 17 6 10.6743 -3.4294 11.4278 18 1 10.0903 -4.2241 11.8679 19 6 11.8791 -3.0659 11.9911 20 7 12.5905 -2.0984 11.4549 21 14 12.5010 -3.9478 13.5159 22 1 13.3255 -5.1147 13.1111 23 1 13.3264 -3.0153 14.3250 24 1 11.3457 -4.4145 14.3237 25 6 2.1532 -0.8940 3.6146 26 6 1.6980 -0.2384 2.4860 27 1 -0.3633 0.5138 0.8900 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 1.8933 -0.5138 -0.8900 31 1 3.1300 1.4425 -0.0005 32 1 1.6766 1.9563 -0.8900 33 1 1.6767 1.9563 0.8900 34 1 3.0878 -2.2035 0.1226 35 1 3.9082 -3.3645 2.1330 36 1 2.7358 -2.6006 5.5283 37 1 3.5755 -3.7868 4.5005 38 1 5.5203 -2.2585 4.3257 39 1 4.6807 -1.0723 5.3534 40 1 4.7646 -3.5382 6.7274 41 1 6.2497 -3.0547 8.9238 42 1 7.0890 -4.2411 7.8960 43 1 9.0342 -2.7126 7.7212 44 1 8.1943 -1.5266 8.7489 45 1 8.1065 -3.1855 10.5903 46 1 8.9464 -4.3711 9.5620 47 1 10.8910 -2.8432 9.3871 48 1 10.0518 -1.6571 10.4153 49 1 13.4379 -1.8425 11.8515 50 1 1.8881 -0.5282 4.5956 51 1 1.0771 0.6397 2.5851 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000588147226.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:05:48 Heat of formation + Delta-G solvation = -65.975814 kcal Electronic energy + Delta-G solvation = -24447.658580 eV Core-core repulsion = 20923.711028 eV Total energy + Delta-G solvation = -3523.947552 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 317.210 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -40.17624 -39.55086 -36.66315 -35.16901 -34.70559 -32.64490 -32.13785 -31.27122 -29.83137 -28.21621 -27.59342 -25.69077 -24.10212 -23.18709 -22.25468 -21.84237 -20.42117 -20.10068 -19.91570 -16.99039 -16.60847 -16.31050 -16.16459 -15.94476 -15.64000 -15.29585 -14.77533 -14.43240 -14.27530 -14.09580 -14.04827 -13.74370 -13.66007 -13.41827 -12.98604 -12.66124 -12.60771 -12.32043 -12.22409 -12.04933 -11.83100 -11.65462 -11.57656 -11.51656 -11.45532 -11.08807 -11.02515 -10.95909 -10.50841 -10.48062 -10.37861 -9.78940 -9.58213 -9.26411 -9.19667 -9.13559 -8.96298 -8.85854 -8.28160 -5.92951 -3.95448 0.95326 1.07199 2.77111 3.11387 3.35556 3.41329 3.41664 3.44786 4.20741 4.31359 4.50557 4.53470 4.53661 4.65407 4.69962 4.74307 4.84205 4.97181 4.99987 5.10122 5.16901 5.18367 5.20526 5.36499 5.37271 5.39698 5.41276 5.42716 5.51320 5.56986 5.68719 5.70799 5.75152 5.77547 5.79847 5.91371 6.08534 6.17522 6.26988 6.28713 6.32601 6.35359 6.58408 6.65923 6.87573 7.05698 7.23181 7.46325 7.76778 7.93105 8.08704 8.30522 8.50454 9.12313 9.68105 11.18370 Molecular weight = 317.21amu Principal moments of inertia in cm(-1) A = 0.041090 B = 0.001413 C = 0.001392 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 681.274363 B =19804.690540 C =20111.832091 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.058 4.058 3 C -0.145 4.145 4 C -0.079 4.079 5 C -0.117 4.117 6 C -0.110 4.110 7 C -0.085 4.085 8 C -0.091 4.091 9 C 0.125 3.875 10 N -0.741 5.741 11 C 0.511 3.489 12 O -0.535 6.535 13 C -0.138 4.138 14 C -0.104 4.104 15 C -0.110 4.110 16 C 0.019 3.981 17 C -0.520 4.520 18 H 0.054 0.946 19 C 0.055 3.945 20 N -0.895 5.895 21 Si 0.891 3.109 22 H -0.281 1.281 23 H -0.287 1.287 24 H -0.274 1.274 25 C -0.111 4.111 26 C -0.113 4.113 27 H 0.057 0.943 28 H 0.057 0.943 29 H 0.055 0.945 30 H 0.076 0.924 31 H 0.057 0.943 32 H 0.057 0.943 33 H 0.057 0.943 34 H 0.121 0.879 35 H 0.122 0.878 36 H 0.079 0.921 37 H 0.079 0.921 38 H 0.067 0.933 39 H 0.067 0.933 40 H 0.399 0.601 41 H 0.090 0.910 42 H 0.090 0.910 43 H 0.063 0.937 44 H 0.063 0.937 45 H 0.046 0.954 46 H 0.046 0.954 47 H 0.016 0.984 48 H 0.016 0.984 49 H 0.260 0.740 50 H 0.122 0.878 51 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -28.763 0.781 -23.644 37.241 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.076 4.076 3 C -0.203 4.203 4 C -0.079 4.079 5 C -0.135 4.135 6 C -0.128 4.128 7 C -0.085 4.085 8 C -0.129 4.129 9 C 0.001 3.999 10 N -0.394 5.394 11 C 0.298 3.702 12 O -0.411 6.411 13 C -0.178 4.178 14 C -0.142 4.142 15 C -0.148 4.148 16 C -0.018 4.018 17 C -0.559 4.559 18 H 0.072 0.928 19 C -0.145 4.145 20 N -0.535 5.535 21 Si 0.719 3.281 22 H -0.207 1.207 23 H -0.213 1.213 24 H -0.199 1.199 25 C -0.129 4.129 26 C -0.131 4.131 27 H 0.076 0.924 28 H 0.076 0.924 29 H 0.074 0.926 30 H 0.095 0.905 31 H 0.076 0.924 32 H 0.076 0.924 33 H 0.076 0.924 34 H 0.139 0.861 35 H 0.140 0.860 36 H 0.097 0.903 37 H 0.097 0.903 38 H 0.085 0.915 39 H 0.085 0.915 40 H 0.233 0.767 41 H 0.108 0.892 42 H 0.108 0.892 43 H 0.082 0.918 44 H 0.082 0.918 45 H 0.065 0.935 46 H 0.065 0.935 47 H 0.034 0.966 48 H 0.034 0.966 49 H 0.069 0.931 50 H 0.140 0.860 51 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -28.109 1.549 -23.983 36.982 hybrid contribution 0.153 -0.812 1.005 1.301 sum -27.955 0.737 -22.978 36.194 Atomic orbital electron populations 1.21860 0.94312 1.01992 1.01974 1.20138 0.95956 0.96151 0.95369 1.21867 1.01418 0.94996 1.01972 1.19878 0.97650 0.95663 0.94703 1.21048 0.98184 0.95647 0.98576 1.21053 0.99754 1.00110 0.91906 1.19647 0.98262 0.96330 0.94298 1.20780 0.96498 0.99875 0.95702 1.21259 0.94113 0.96893 0.87645 1.46114 1.22970 1.39997 1.30352 1.21113 0.80051 0.83391 0.85623 1.90712 1.56341 1.30764 1.63255 1.21792 1.00422 1.00884 0.94737 1.21451 0.93270 1.00302 0.99143 1.21652 0.99798 0.98737 0.94613 1.19102 0.90483 0.96185 0.96019 1.21292 1.04565 1.18515 1.11504 0.92760 1.25038 0.96920 0.95208 0.97374 1.69979 1.13786 1.29105 1.40585 0.86616 0.78819 0.79463 0.83206 1.20722 1.21257 1.19928 1.21056 0.97812 0.95262 0.98729 1.20948 1.00370 0.99891 0.91879 0.92427 0.92366 0.92559 0.90515 0.92403 0.92359 0.92398 0.86146 0.85981 0.90256 0.90258 0.91496 0.91500 0.76673 0.89157 0.89156 0.91827 0.91821 0.93482 0.93489 0.96585 0.96577 0.93071 0.85997 0.86158 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.70 9.01 37.16 0.33 -0.36 16 2 C -0.06 -0.32 3.09 -91.78 -0.28 -0.61 16 3 C -0.15 -0.78 9.01 37.16 0.33 -0.45 16 4 C -0.08 -0.57 4.78 -104.63 -0.50 -1.07 16 5 C -0.12 -0.86 9.67 -39.58 -0.38 -1.24 16 6 C -0.11 -0.84 9.70 -39.58 -0.38 -1.22 16 7 C -0.08 -0.65 5.13 -104.62 -0.54 -1.19 16 8 C -0.09 -0.60 5.46 -27.88 -0.15 -0.75 16 9 C 0.12 1.19 5.66 -4.04 -0.02 1.17 16 10 N -0.74 -7.38 5.56 -60.30 -0.33 -7.71 16 11 C 0.51 7.25 7.83 -10.99 -0.09 7.17 16 12 O -0.54 -10.09 15.98 5.56 0.09 -10.00 16 13 C -0.14 -1.86 5.70 -27.89 -0.16 -2.02 16 14 C -0.10 -1.89 4.50 -26.73 -0.12 -2.02 16 15 C -0.11 -2.31 5.15 -26.73 -0.14 -2.45 16 16 C 0.02 0.52 4.97 -27.88 -0.14 0.38 16 17 C -0.52 -15.16 9.11 -34.44 -0.31 -15.47 16 18 H 0.05 1.52 7.74 -52.49 -0.41 1.11 16 19 C 0.06 1.64 5.46 -17.82 -0.10 1.54 16 20 N -0.90 -27.74 13.29 55.43 0.74 -27.00 16 21 Si 0.89 22.04 29.54 -169.99 -5.02 17.02 16 22 H -0.28 -6.84 7.11 56.52 0.40 -6.43 16 23 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 24 H -0.27 -6.61 7.11 56.52 0.40 -6.21 16 25 C -0.11 -0.84 9.70 -39.58 -0.38 -1.22 16 26 C -0.11 -0.82 8.71 -39.58 -0.34 -1.17 16 27 H 0.06 0.27 7.39 -51.93 -0.38 -0.11 16 28 H 0.06 0.23 8.14 -51.93 -0.42 -0.19 16 29 H 0.06 0.28 8.14 -51.93 -0.42 -0.14 16 30 H 0.08 0.40 7.88 -51.93 -0.41 -0.01 16 31 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 32 H 0.06 0.26 8.14 -51.93 -0.42 -0.16 16 33 H 0.06 0.31 7.39 -51.93 -0.38 -0.07 16 34 H 0.12 0.70 7.95 -52.49 -0.42 0.28 16 35 H 0.12 0.78 8.06 -52.49 -0.42 0.35 16 36 H 0.08 0.44 8.08 -51.93 -0.42 0.02 16 37 H 0.08 0.44 8.09 -51.93 -0.42 0.02 16 38 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 39 H 0.07 0.73 8.14 -51.92 -0.42 0.31 16 40 H 0.40 2.68 8.47 -40.82 -0.35 2.33 16 41 H 0.09 1.04 8.14 -51.93 -0.42 0.62 16 42 H 0.09 1.04 8.14 -51.93 -0.42 0.61 16 43 H 0.06 1.24 8.10 -51.93 -0.42 0.82 16 44 H 0.06 1.24 8.10 -51.93 -0.42 0.82 16 45 H 0.05 0.94 8.14 -51.92 -0.42 0.52 16 46 H 0.05 0.94 8.14 -51.93 -0.42 0.52 16 47 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 48 H 0.02 0.46 8.14 -51.93 -0.42 0.03 16 49 H 0.26 7.57 8.31 -40.82 -0.34 7.23 16 50 H 0.12 0.77 8.06 -52.48 -0.42 0.35 16 51 H 0.12 0.71 7.10 -52.49 -0.37 0.34 16 LS Contribution 416.75 15.07 6.28 6.28 Total: -1.00 -34.70 416.75 -11.08 -45.78 By element: Atomic # 1 Polarization: 6.07 SS G_CDS: -9.45 Total: -3.38 kcal Atomic # 6 Polarization: -17.61 SS G_CDS: -3.38 Total: -20.99 kcal Atomic # 7 Polarization: -35.11 SS G_CDS: 0.40 Total: -34.71 kcal Atomic # 8 Polarization: -10.09 SS G_CDS: 0.09 Total: -10.00 kcal Atomic # 14 Polarization: 22.04 SS G_CDS: -5.02 Total: 17.02 kcal Total LS contribution 6.28 Total: 6.28 kcal Total: -34.70 -11.08 -45.78 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000588147226.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.199 kcal (2) G-P(sol) polarization free energy of solvation -34.698 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.897 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.079 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.777 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.976 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds