Wall clock time and date at job start Tue Mar 31 2020 12:05:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52998 * 109.47062 * 2 1 4 4 C 1.50696 * 109.47383 * 119.99852 * 2 1 3 5 5 C 1.38238 * 119.99728 * 120.00184 * 4 2 1 6 6 C 1.38235 * 120.00108 * 180.02562 * 5 4 2 7 7 C 1.38243 * 119.99617 * 0.02562 * 6 5 4 8 8 C 1.50706 * 119.99586 * 179.97438 * 7 6 5 9 9 C 1.53000 * 109.47116 * 89.99867 * 8 7 6 10 10 N 1.46496 * 109.47378 * 179.97438 * 9 8 7 11 11 C 1.34776 * 120.00347 * 179.97438 * 10 9 8 12 12 O 1.21281 * 119.99879 * 0.02562 * 11 10 9 13 13 C 1.50696 * 120.00079 * 180.02562 * 11 10 9 14 14 C 1.53000 * 109.47110 * 180.02562 * 13 11 10 15 15 C 1.52996 * 109.47213 * 180.02562 * 14 13 11 16 16 C 1.53000 * 109.47213 * 179.97438 * 15 14 13 17 17 C 1.50706 * 109.47112 * 179.97438 * 16 15 14 18 18 H 1.07997 * 120.00013 * 0.02562 * 17 16 15 19 19 C 1.37877 * 119.99843 * 179.97438 * 17 16 15 20 20 N 1.31516 * 120.00058 * 0.02562 * 19 17 16 21 21 Si 1.86800 * 119.99806 * 180.02562 * 19 17 16 22 22 H 1.48501 * 109.47057 * 90.00275 * 21 19 17 23 23 H 1.48508 * 109.47034 * 210.00302 * 21 19 17 24 24 H 1.48500 * 109.47389 * 330.00294 * 21 19 17 25 25 C 1.38233 * 120.00248 * 0.25361 * 7 6 5 26 26 C 1.38234 * 120.00209 * 300.02591 * 4 2 1 27 27 H 1.09001 * 109.46954 * 299.99809 * 1 2 3 28 28 H 1.09001 * 109.47412 * 59.99879 * 1 2 3 29 29 H 1.09003 * 109.46938 * 179.97438 * 1 2 3 30 30 H 1.09001 * 109.46954 * 240.00191 * 2 1 3 31 31 H 1.09001 * 109.47293 * 180.02562 * 3 2 1 32 32 H 1.09001 * 109.47105 * 300.00308 * 3 2 1 33 33 H 1.09001 * 109.47080 * 60.00267 * 3 2 1 34 34 H 1.08000 * 120.00578 * 359.97438 * 5 4 2 35 35 H 1.07999 * 120.00165 * 179.97438 * 6 5 4 36 36 H 1.09000 * 109.46646 * 209.99280 * 8 7 6 37 37 H 1.09000 * 109.47248 * 329.99998 * 8 7 6 38 38 H 1.09000 * 109.47214 * 300.00167 * 9 8 7 39 39 H 1.09008 * 109.47142 * 59.99333 * 9 8 7 40 40 H 0.97001 * 119.99484 * 0.02562 * 10 9 8 41 41 H 1.09000 * 109.47543 * 300.00434 * 13 11 10 42 42 H 1.09000 * 109.46926 * 60.00402 * 13 11 10 43 43 H 1.09005 * 109.47322 * 299.99831 * 14 13 11 44 44 H 1.08991 * 109.47114 * 60.00075 * 14 13 11 45 45 H 1.09008 * 109.47046 * 299.99946 * 15 14 13 46 46 H 1.09003 * 109.47659 * 60.00123 * 15 14 13 47 47 H 1.08997 * 109.47467 * 299.99763 * 16 15 14 48 48 H 1.09000 * 109.46955 * 59.99998 * 16 15 14 49 49 H 0.97000 * 119.99660 * 179.97438 * 20 19 17 50 50 H 1.08004 * 119.99934 * 179.72684 * 25 7 6 51 51 H 1.07999 * 120.00005 * 359.97438 * 26 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0324 -0.7103 1.2304 5 6 2.8272 -1.8342 1.1035 6 6 3.2876 -2.4862 2.2321 7 6 2.9528 -2.0145 3.4877 8 6 3.4543 -2.7257 4.7182 9 6 4.8018 -2.1336 5.1358 10 7 5.2891 -2.8244 6.3322 11 6 6.4666 -2.4688 6.8832 12 8 7.1226 -1.5766 6.3887 13 6 6.9681 -3.1799 8.1136 14 6 8.3155 -2.5877 8.5313 15 6 8.8250 -3.3100 9.7801 16 6 10.1728 -2.7183 10.1974 17 6 10.6743 -3.4294 11.4278 18 1 10.0903 -4.2241 11.8679 19 6 11.8791 -3.0659 11.9911 20 7 12.5905 -2.0984 11.4549 21 14 12.5010 -3.9478 13.5159 22 1 13.3255 -5.1147 13.1111 23 1 13.3264 -3.0153 14.3250 24 1 11.3457 -4.4145 14.3237 25 6 2.1532 -0.8940 3.6146 26 6 1.6980 -0.2384 2.4860 27 1 -0.3633 0.5138 0.8900 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 1.8933 -0.5138 -0.8900 31 1 3.1300 1.4425 -0.0005 32 1 1.6766 1.9563 -0.8900 33 1 1.6767 1.9563 0.8900 34 1 3.0878 -2.2035 0.1226 35 1 3.9082 -3.3645 2.1330 36 1 2.7358 -2.6006 5.5283 37 1 3.5755 -3.7868 4.5005 38 1 5.5203 -2.2585 4.3257 39 1 4.6807 -1.0723 5.3534 40 1 4.7646 -3.5382 6.7274 41 1 6.2497 -3.0547 8.9238 42 1 7.0890 -4.2411 7.8960 43 1 9.0342 -2.7126 7.7212 44 1 8.1943 -1.5266 8.7489 45 1 8.1065 -3.1855 10.5903 46 1 8.9464 -4.3711 9.5620 47 1 10.8910 -2.8432 9.3871 48 1 10.0518 -1.6571 10.4153 49 1 13.4379 -1.8425 11.8515 50 1 1.8881 -0.5282 4.5956 51 1 1.0771 0.6397 2.5851 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000588147226.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:05:47 Heat of formation + Delta-G solvation = -84.828908 kcal Electronic energy + Delta-G solvation = -24448.476111 eV Core-core repulsion = 20923.711028 eV Total energy + Delta-G solvation = -3524.765083 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 317.210 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -40.89793 -40.47059 -37.32313 -36.61328 -35.76862 -34.59948 -32.92886 -31.81533 -31.42712 -29.08195 -27.99343 -27.33239 -25.08002 -23.90526 -23.58410 -22.50781 -21.79176 -21.26534 -20.72544 -18.41500 -17.93177 -17.30566 -17.09404 -16.91835 -16.50636 -16.46331 -15.89736 -15.77549 -15.01646 -14.89177 -14.65022 -14.58264 -14.50118 -14.42858 -14.12666 -13.66968 -13.60581 -13.54272 -13.28741 -13.09024 -12.82657 -12.79547 -12.59823 -12.48923 -12.32839 -12.14689 -12.11556 -11.99415 -11.98785 -11.57374 -11.49240 -11.36675 -11.34710 -11.15711 -10.76941 -10.54266 -10.11301 -9.79940 -9.41861 -8.17907 -6.30272 0.39942 0.51959 1.40968 1.43346 1.54429 1.66657 2.21749 2.42873 2.84195 3.14856 3.72478 3.82087 3.85814 4.01320 4.03103 4.06818 4.13395 4.16627 4.17826 4.29276 4.31689 4.52640 4.57609 4.59831 4.62403 4.69187 4.70899 4.79178 4.86386 4.89035 4.91961 4.96724 4.98249 5.02394 5.10865 5.20383 5.20840 5.23180 5.33987 5.34682 5.36907 5.37054 5.46512 5.56025 5.58553 5.71403 5.76871 5.79046 5.88872 6.13299 6.26026 6.58752 6.88268 7.30441 7.39490 8.94347 Molecular weight = 317.21amu Principal moments of inertia in cm(-1) A = 0.041090 B = 0.001413 C = 0.001392 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 681.274363 B =19804.690540 C =20111.832091 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.057 4.057 3 C -0.144 4.144 4 C -0.086 4.086 5 C -0.130 4.130 6 C -0.121 4.121 7 C -0.097 4.097 8 C -0.077 4.077 9 C 0.127 3.873 10 N -0.717 5.717 11 C 0.509 3.491 12 O -0.592 6.592 13 C -0.127 4.127 14 C -0.097 4.097 15 C -0.096 4.096 16 C 0.017 3.983 17 C -0.543 4.543 18 H 0.067 0.933 19 C -0.006 4.006 20 N -0.938 5.938 21 Si 0.970 3.030 22 H -0.272 1.272 23 H -0.284 1.284 24 H -0.259 1.259 25 C -0.122 4.122 26 C -0.123 4.123 27 H 0.057 0.943 28 H 0.067 0.933 29 H 0.052 0.948 30 H 0.081 0.919 31 H 0.047 0.953 32 H 0.068 0.932 33 H 0.056 0.944 34 H 0.132 0.868 35 H 0.132 0.868 36 H 0.095 0.905 37 H 0.095 0.905 38 H 0.050 0.950 39 H 0.050 0.950 40 H 0.420 0.580 41 H 0.120 0.880 42 H 0.120 0.880 43 H 0.041 0.959 44 H 0.041 0.959 45 H 0.061 0.939 46 H 0.062 0.938 47 H -0.016 1.016 48 H -0.016 1.016 49 H 0.262 0.738 50 H 0.132 0.868 51 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -30.872 -1.228 -22.970 38.500 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.076 4.076 3 C -0.201 4.201 4 C -0.086 4.086 5 C -0.147 4.147 6 C -0.139 4.139 7 C -0.098 4.098 8 C -0.115 4.115 9 C 0.003 3.997 10 N -0.371 5.371 11 C 0.297 3.703 12 O -0.473 6.473 13 C -0.167 4.167 14 C -0.136 4.136 15 C -0.133 4.133 16 C -0.020 4.020 17 C -0.581 4.581 18 H 0.085 0.915 19 C -0.203 4.203 20 N -0.578 5.578 21 Si 0.794 3.206 22 H -0.197 1.197 23 H -0.210 1.210 24 H -0.183 1.183 25 C -0.140 4.140 26 C -0.141 4.141 27 H 0.076 0.924 28 H 0.086 0.914 29 H 0.071 0.929 30 H 0.099 0.901 31 H 0.066 0.934 32 H 0.087 0.913 33 H 0.075 0.925 34 H 0.150 0.850 35 H 0.150 0.850 36 H 0.114 0.886 37 H 0.114 0.886 38 H 0.068 0.932 39 H 0.068 0.932 40 H 0.258 0.742 41 H 0.138 0.862 42 H 0.138 0.862 43 H 0.060 0.940 44 H 0.060 0.940 45 H 0.080 0.920 46 H 0.080 0.920 47 H 0.002 0.998 48 H 0.002 0.998 49 H 0.071 0.929 50 H 0.150 0.850 51 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -30.283 -0.505 -23.312 38.220 hybrid contribution 0.800 -0.135 0.724 1.087 sum -29.484 -0.640 -22.588 37.147 Atomic orbital electron populations 1.21837 0.93617 1.01939 1.02469 1.20167 0.96497 0.96043 0.94855 1.21858 1.00745 0.95055 1.02483 1.20122 0.97446 0.95697 0.95323 1.21296 0.98336 0.95898 0.99218 1.21281 0.99913 1.00602 0.92103 1.19808 0.98576 0.96659 0.94737 1.20694 0.94735 1.00315 0.95728 1.21243 0.95375 0.96293 0.86770 1.45890 1.21621 1.39745 1.29834 1.21254 0.80689 0.82682 0.85696 1.90702 1.58267 1.33379 1.64913 1.21673 0.97867 1.01830 0.95302 1.21253 0.95871 0.99146 0.97280 1.21452 0.96568 0.99215 0.96079 1.19071 0.93351 0.94737 0.94819 1.21768 1.05148 1.18942 1.12194 0.91507 1.26091 0.97172 0.95937 1.01126 1.70139 1.14327 1.30859 1.42521 0.85381 0.78529 0.78138 0.78579 1.19709 1.20953 1.18266 1.21286 0.97923 0.95379 0.99364 1.21153 1.00623 1.00321 0.91994 0.92434 0.91374 0.92866 0.90109 0.93420 0.91264 0.92485 0.85016 0.85027 0.88627 0.88637 0.93163 0.93161 0.74240 0.86165 0.86162 0.94023 0.94011 0.91980 0.91974 0.99765 0.99755 0.92887 0.85031 0.85180 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.22 9.01 71.98 0.65 -0.57 16 2 C -0.06 -0.60 3.09 -11.54 -0.04 -0.63 16 3 C -0.14 -1.47 9.01 71.98 0.65 -0.82 16 4 C -0.09 -1.19 4.78 -19.87 -0.09 -1.29 16 5 C -0.13 -1.84 9.67 22.27 0.22 -1.63 16 6 C -0.12 -1.75 9.70 22.27 0.22 -1.54 16 7 C -0.10 -1.40 5.13 -19.86 -0.10 -1.50 16 8 C -0.08 -0.86 5.46 29.85 0.16 -0.70 16 9 C 0.13 2.31 5.66 86.38 0.49 2.79 16 10 N -0.72 -12.79 5.56 -463.07 -2.57 -15.37 16 11 C 0.51 13.90 7.83 87.66 0.69 14.59 16 12 O -0.59 -22.90 15.98 -3.03 -0.05 -22.94 16 13 C -0.13 -3.11 5.70 29.85 0.17 -2.94 16 14 C -0.10 -3.57 4.50 30.59 0.14 -3.43 16 15 C -0.10 -3.94 5.15 30.59 0.16 -3.78 16 16 C 0.02 0.97 4.97 29.85 0.15 1.11 16 17 C -0.54 -31.72 9.11 25.60 0.23 -31.48 16 18 H 0.07 3.65 7.74 -2.91 -0.02 3.63 16 19 C -0.01 -0.36 5.46 84.65 0.46 0.10 16 20 N -0.94 -59.49 13.29 21.45 0.28 -59.20 16 21 Si 0.97 44.99 29.54 68.60 2.03 47.02 16 22 H -0.27 -12.13 7.11 99.48 0.71 -11.43 16 23 H -0.28 -12.94 7.11 99.48 0.71 -12.24 16 24 H -0.26 -11.27 7.11 99.48 0.71 -10.56 16 25 C -0.12 -1.75 9.70 22.27 0.22 -1.54 16 26 C -0.12 -1.73 8.71 22.27 0.19 -1.54 16 27 H 0.06 0.49 7.39 -2.39 -0.02 0.47 16 28 H 0.07 0.45 8.14 -2.39 -0.02 0.43 16 29 H 0.05 0.49 8.14 -2.39 -0.02 0.47 16 30 H 0.08 0.77 7.88 -2.39 -0.02 0.75 16 31 H 0.05 0.58 8.14 -2.39 -0.02 0.56 16 32 H 0.07 0.54 8.14 -2.39 -0.02 0.52 16 33 H 0.06 0.58 7.39 -2.39 -0.02 0.56 16 34 H 0.13 1.45 7.95 -2.91 -0.02 1.43 16 35 H 0.13 1.54 8.06 -2.91 -0.02 1.52 16 36 H 0.10 0.78 8.08 -2.39 -0.02 0.77 16 37 H 0.10 0.79 8.09 -2.39 -0.02 0.77 16 38 H 0.05 1.10 8.14 -2.39 -0.02 1.08 16 39 H 0.05 1.10 8.14 -2.38 -0.02 1.08 16 40 H 0.42 4.11 8.47 -92.71 -0.79 3.32 16 41 H 0.12 2.29 8.14 -2.39 -0.02 2.27 16 42 H 0.12 2.29 8.14 -2.39 -0.02 2.27 16 43 H 0.04 1.68 8.10 -2.38 -0.02 1.66 16 44 H 0.04 1.69 8.10 -2.39 -0.02 1.67 16 45 H 0.06 2.37 8.14 -2.38 -0.02 2.35 16 46 H 0.06 2.37 8.14 -2.39 -0.02 2.35 16 47 H -0.02 -0.98 8.14 -2.39 -0.02 -1.00 16 48 H -0.02 -0.97 8.14 -2.39 -0.02 -0.99 16 49 H 0.26 15.59 8.31 -92.71 -0.77 14.81 16 50 H 0.13 1.53 8.06 -2.91 -0.02 1.51 16 51 H 0.13 1.46 7.10 -2.91 -0.02 1.44 16 Total: -1.00 -78.15 416.75 4.33 -73.82 By element: Atomic # 1 Polarization: 11.39 SS G_CDS: 0.09 Total: 11.47 kcal Atomic # 6 Polarization: -39.35 SS G_CDS: 4.55 Total: -34.80 kcal Atomic # 7 Polarization: -72.28 SS G_CDS: -2.29 Total: -74.57 kcal Atomic # 8 Polarization: -22.90 SS G_CDS: -0.05 Total: -22.94 kcal Atomic # 14 Polarization: 44.99 SS G_CDS: 2.03 Total: 47.02 kcal Total: -78.15 4.33 -73.82 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000588147226.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.010 kcal (2) G-P(sol) polarization free energy of solvation -78.148 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.159 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.330 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.818 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.829 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds