Wall clock time and date at job start Tue Mar 31 2020 11:18:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.38257 * 119.99731 * 2 1 4 4 C 1.38211 * 120.00115 * 179.97438 * 3 2 1 5 5 C 1.38262 * 119.99732 * 0.02562 * 4 3 2 6 6 C 1.50703 * 119.99880 * 179.97438 * 5 4 3 7 7 C 1.53000 * 109.46912 * 265.00270 * 6 5 4 8 8 C 1.53001 * 109.46886 * 180.02562 * 7 6 5 9 9 N 1.46500 * 109.47299 * 179.97438 * 8 7 6 10 10 C 1.34777 * 120.00376 * 179.97438 * 9 8 7 11 11 O 1.21279 * 119.99633 * 0.02562 * 10 9 8 12 12 C 1.50701 * 120.00115 * 179.97438 * 10 9 8 13 13 C 1.53002 * 109.46958 * 179.97438 * 12 10 9 14 14 C 1.53000 * 109.46806 * 180.02562 * 13 12 10 15 15 C 1.53001 * 109.46886 * 180.02562 * 14 13 12 16 16 C 1.50697 * 109.47291 * 179.97438 * 15 14 13 17 17 H 1.08006 * 119.99920 * 359.97438 * 16 15 14 18 18 C 1.37876 * 120.00428 * 179.97438 * 16 15 14 19 19 N 1.31510 * 119.99600 * 359.97438 * 18 16 15 20 20 Si 1.86797 * 120.00047 * 179.97438 * 18 16 15 21 21 H 1.48499 * 109.47094 * 90.00018 * 20 18 16 22 22 H 1.48506 * 109.46981 * 209.99562 * 20 18 16 23 23 H 1.48494 * 109.47571 * 330.00250 * 20 18 16 24 24 C 1.38210 * 120.00106 * 0.25347 * 5 4 3 25 25 C 1.50699 * 120.00166 * 179.72002 * 24 5 4 26 26 C 1.38206 * 120.00141 * 180.02562 * 2 1 3 27 27 H 1.09000 * 109.47271 * 90.00384 * 1 2 3 28 28 H 1.09002 * 109.46819 * 210.00090 * 1 2 3 29 29 H 1.09001 * 109.47500 * 329.99729 * 1 2 3 30 30 H 1.07998 * 120.00075 * 359.97438 * 3 2 1 31 31 H 1.07999 * 120.00450 * 180.02562 * 4 3 2 32 32 H 1.09002 * 109.47152 * 145.00042 * 6 5 4 33 33 H 1.09001 * 109.46980 * 25.00142 * 6 5 4 34 34 H 1.09001 * 109.47194 * 299.99742 * 7 6 5 35 35 H 1.08992 * 109.47399 * 59.99914 * 7 6 5 36 36 H 1.09001 * 109.47109 * 299.99380 * 8 7 6 37 37 H 1.09002 * 109.47508 * 59.99571 * 8 7 6 38 38 H 0.97003 * 119.99983 * 359.97438 * 9 8 7 39 39 H 1.08998 * 109.47176 * 300.00647 * 12 10 9 40 40 H 1.09002 * 109.46793 * 60.00480 * 12 10 9 41 41 H 1.09001 * 109.47142 * 300.00227 * 13 12 10 42 42 H 1.09002 * 109.47097 * 60.00192 * 13 12 10 43 43 H 1.09001 * 109.47194 * 299.99875 * 14 13 12 44 44 H 1.08992 * 109.47399 * 60.00048 * 14 13 12 45 45 H 1.09001 * 109.46652 * 299.99655 * 15 14 13 46 46 H 1.09002 * 109.47508 * 59.99571 * 15 14 13 47 47 H 0.97003 * 119.99907 * 180.02562 * 19 18 16 48 48 H 1.09004 * 109.46714 * 89.99954 * 25 24 5 49 49 H 1.09001 * 109.47281 * 210.00054 * 25 24 5 50 50 H 1.09001 * 109.47263 * 330.00636 * 25 24 5 51 51 H 1.07998 * 120.00511 * 0.02562 * 26 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1982 1.1974 0.0000 4 6 3.5803 1.1975 0.0005 5 6 4.2717 0.0001 0.0005 6 6 5.7787 0.0002 0.0005 7 6 6.2886 -0.1255 -1.4365 8 6 7.8186 -0.1261 -1.4364 9 7 8.3070 -0.2470 -2.8123 10 6 9.6321 -0.2685 -3.0577 11 8 10.4202 -0.1882 -2.1394 12 6 10.1344 -0.3934 -4.4730 13 6 11.6644 -0.3926 -4.4731 14 6 12.1744 -0.5188 -5.9100 15 6 13.7044 -0.5186 -5.9101 16 6 14.2068 -0.6436 -7.3253 17 1 13.5049 -0.7163 -8.1430 18 6 15.5623 -0.6651 -7.5764 19 7 16.4169 -0.5760 -6.5808 20 14 16.1849 -0.8207 -9.3307 21 1 16.3490 0.5326 -9.9195 22 1 17.4936 -1.5226 -9.3310 23 1 15.2073 -1.5956 -10.1361 24 6 3.5807 -1.1969 -0.0053 25 6 4.3342 -2.5019 -0.0117 26 6 2.1980 -1.1969 -0.0005 27 1 -0.3634 -0.0001 -1.0277 28 1 -0.3633 -0.8900 0.5139 29 1 -0.3634 0.8899 0.5139 30 1 1.6582 2.1326 -0.0004 31 1 4.1203 2.1328 0.0010 32 1 6.1421 -0.8417 0.5900 33 1 6.1420 0.9316 0.4349 34 1 5.9254 -1.0569 -1.8708 35 1 5.9253 0.7163 -2.0259 36 1 8.1823 0.8052 -1.0020 37 1 8.1817 -0.9681 -0.8471 38 1 7.6767 -0.3115 -3.5468 39 1 9.7711 -1.3252 -4.9066 40 1 9.7710 0.4479 -5.0631 41 1 12.0273 0.5394 -4.0396 42 1 12.0283 -1.2337 -3.8828 43 1 11.8116 -1.4507 -6.3438 44 1 11.8106 0.3224 -6.4999 45 1 14.0675 0.4130 -5.4762 46 1 14.0679 -1.3601 -5.3202 47 1 17.3706 -0.5907 -6.7574 48 1 4.5158 -2.8215 1.0145 49 1 3.7451 -3.2591 -0.5292 50 1 5.2867 -2.3691 -0.5248 51 1 1.6582 -2.1322 -0.0014 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000588147523.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:18:47 Heat of formation + Delta-G solvation = -87.304060 kcal Electronic energy + Delta-G solvation = -24483.548862 eV Core-core repulsion = 20958.676448 eV Total energy + Delta-G solvation = -3524.872414 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 317.210 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -40.85185 -40.54910 -37.20083 -36.54092 -35.21688 -34.59594 -33.35166 -32.44152 -31.36524 -28.87580 -28.00516 -27.34111 -25.50678 -23.96020 -23.00719 -22.61613 -21.78715 -21.24112 -20.74725 -18.41466 -17.81660 -17.26654 -17.22464 -16.82749 -16.53124 -16.33948 -15.99336 -15.62878 -15.16217 -15.00986 -14.77483 -14.53028 -14.08037 -14.01513 -13.93339 -13.73824 -13.58708 -13.49874 -13.44234 -13.18373 -12.98477 -12.81961 -12.79124 -12.59190 -12.33262 -12.20844 -12.14389 -12.11570 -11.93342 -11.61683 -11.57829 -11.36685 -11.34710 -11.15521 -10.75341 -10.54233 -10.07818 -9.62831 -9.26765 -8.17917 -6.30217 0.43376 0.50803 1.40956 1.43272 1.54375 1.67679 2.24085 2.42904 2.82296 3.14854 3.71057 3.86824 3.87461 4.00201 4.06214 4.07354 4.10594 4.16848 4.31059 4.32411 4.39867 4.48451 4.64599 4.65334 4.69903 4.70546 4.72896 4.80089 4.84367 4.85384 4.86620 4.88601 4.91370 5.02411 5.06836 5.13004 5.20826 5.24937 5.33768 5.34562 5.37387 5.42836 5.50728 5.58505 5.59574 5.73243 5.79108 5.79759 5.88910 6.18078 6.26174 6.58960 6.88258 7.30762 7.39505 8.94355 Molecular weight = 317.21amu Principal moments of inertia in cm(-1) A = 0.035203 B = 0.001413 C = 0.001401 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 795.203123 B =19815.462091 C =19983.098772 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.098 4.098 3 C -0.138 4.138 4 C -0.119 4.119 5 C -0.098 4.098 6 C -0.075 4.075 7 C -0.110 4.110 8 C 0.118 3.882 9 N -0.720 5.720 10 C 0.509 3.491 11 O -0.591 6.591 12 C -0.129 4.129 13 C -0.097 4.097 14 C -0.096 4.096 15 C 0.018 3.982 16 C -0.543 4.543 17 H 0.066 0.934 18 C -0.006 4.006 19 N -0.938 5.938 20 Si 0.970 3.030 21 H -0.272 1.272 22 H -0.284 1.284 23 H -0.259 1.259 24 C -0.088 4.088 25 C -0.120 4.120 26 C -0.135 4.135 27 H 0.075 0.925 28 H 0.071 0.929 29 H 0.072 0.928 30 H 0.132 0.868 31 H 0.131 0.869 32 H 0.079 0.921 33 H 0.077 0.923 34 H 0.079 0.921 35 H 0.077 0.923 36 H 0.055 0.945 37 H 0.057 0.943 38 H 0.417 0.583 39 H 0.119 0.881 40 H 0.118 0.882 41 H 0.042 0.958 42 H 0.042 0.958 43 H 0.061 0.939 44 H 0.061 0.939 45 H -0.016 1.016 46 H -0.015 1.015 47 H 0.263 0.737 48 H 0.074 0.926 49 H 0.072 0.928 50 H 0.074 0.926 51 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -37.074 0.245 13.607 39.493 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.098 4.098 3 C -0.156 4.156 4 C -0.137 4.137 5 C -0.098 4.098 6 C -0.113 4.113 7 C -0.148 4.148 8 C -0.006 4.006 9 N -0.373 5.373 10 C 0.297 3.703 11 O -0.471 6.471 12 C -0.168 4.168 13 C -0.135 4.135 14 C -0.134 4.134 15 C -0.019 4.019 16 C -0.581 4.581 17 H 0.084 0.916 18 C -0.203 4.203 19 N -0.578 5.578 20 Si 0.794 3.206 21 H -0.197 1.197 22 H -0.209 1.209 23 H -0.183 1.183 24 C -0.088 4.088 25 C -0.177 4.177 26 C -0.153 4.153 27 H 0.094 0.906 28 H 0.090 0.910 29 H 0.091 0.909 30 H 0.150 0.850 31 H 0.149 0.851 32 H 0.097 0.903 33 H 0.096 0.904 34 H 0.098 0.902 35 H 0.096 0.904 36 H 0.074 0.926 37 H 0.075 0.925 38 H 0.255 0.745 39 H 0.137 0.863 40 H 0.136 0.864 41 H 0.060 0.940 42 H 0.061 0.939 43 H 0.080 0.920 44 H 0.080 0.920 45 H 0.003 0.997 46 H 0.003 0.997 47 H 0.071 0.929 48 H 0.092 0.908 49 H 0.091 0.909 50 H 0.092 0.908 51 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -36.367 0.297 14.307 39.081 hybrid contribution 0.708 0.052 -0.667 0.974 sum -35.659 0.349 13.640 38.180 Atomic orbital electron populations 1.20823 0.89925 1.03397 1.02868 1.20211 0.97214 0.93149 0.99219 1.21256 0.94391 0.98212 1.01743 1.21264 0.94500 0.98013 0.99948 1.19808 0.95692 0.92824 1.01456 1.20473 0.90529 1.03707 0.96614 1.21659 0.91914 1.03793 0.97424 1.21369 0.94828 1.01397 0.82980 1.45927 1.06507 1.74629 1.10189 1.21206 0.82457 0.74629 0.92004 1.90695 1.56852 1.51360 1.48203 1.21675 0.95866 1.06589 0.92676 1.21249 0.94500 1.00936 0.96791 1.21453 0.95487 1.01288 0.95130 1.19066 0.93054 0.94323 0.95498 1.21767 0.92319 1.49866 0.94134 0.91560 1.26083 0.97427 0.94797 1.01983 1.70135 1.02401 1.51733 1.33549 0.85383 0.77681 0.78558 0.79024 1.19715 1.20920 1.18310 1.20010 0.93926 0.95529 0.99289 1.20917 1.00379 0.93515 1.02853 1.21156 0.93725 0.98242 1.02149 0.90632 0.90978 0.90902 0.84979 0.85120 0.90268 0.90436 0.90211 0.90437 0.92641 0.92484 0.74549 0.86310 0.86366 0.93958 0.93919 0.92043 0.92047 0.99733 0.99703 0.92871 0.90778 0.90864 0.90758 0.85142 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.90 10.01 71.24 0.71 -0.18 16 2 C -0.10 -1.23 5.88 -19.87 -0.12 -1.35 16 3 C -0.14 -1.77 9.70 22.27 0.22 -1.55 16 4 C -0.12 -1.58 9.68 22.27 0.22 -1.37 16 5 C -0.10 -1.31 5.13 -19.86 -0.10 -1.41 16 6 C -0.08 -0.86 4.65 29.85 0.14 -0.72 16 7 C -0.11 -1.20 5.12 30.59 0.16 -1.04 16 8 C 0.12 1.97 5.67 86.38 0.49 2.47 16 9 N -0.72 -12.88 5.56 -463.06 -2.57 -15.45 16 10 C 0.51 13.80 7.83 87.66 0.69 14.49 16 11 O -0.59 -22.36 15.98 -3.03 -0.05 -22.41 16 12 C -0.13 -3.17 5.70 29.85 0.17 -3.00 16 13 C -0.10 -3.54 4.50 30.60 0.14 -3.40 16 14 C -0.10 -3.96 5.15 30.59 0.16 -3.81 16 15 C 0.02 0.98 4.97 29.85 0.15 1.13 16 16 C -0.54 -31.75 9.11 25.60 0.23 -31.51 16 17 H 0.07 3.63 7.74 -2.91 -0.02 3.60 16 18 C -0.01 -0.34 5.46 84.66 0.46 0.12 16 19 N -0.94 -59.38 13.29 21.45 0.28 -59.10 16 20 Si 0.97 44.99 29.54 68.60 2.03 47.02 16 21 H -0.27 -12.14 7.11 99.48 0.71 -11.43 16 22 H -0.28 -12.92 7.11 99.48 0.71 -12.21 16 23 H -0.26 -11.30 7.11 99.48 0.71 -10.60 16 24 C -0.09 -1.17 5.88 -19.87 -0.12 -1.28 16 25 C -0.12 -1.22 9.22 71.24 0.66 -0.56 16 26 C -0.13 -1.76 9.36 22.27 0.21 -1.55 16 27 H 0.08 0.51 8.14 -2.39 -0.02 0.49 16 28 H 0.07 0.47 8.09 -2.39 -0.02 0.45 16 29 H 0.07 0.46 8.09 -2.39 -0.02 0.44 16 30 H 0.13 1.24 8.06 -2.91 -0.02 1.22 16 31 H 0.13 1.38 8.06 -2.91 -0.02 1.35 16 32 H 0.08 0.88 7.01 -2.39 -0.02 0.86 16 33 H 0.08 0.85 8.05 -2.39 -0.02 0.83 16 34 H 0.08 0.78 6.88 -2.39 -0.02 0.76 16 35 H 0.08 0.79 8.14 -2.39 -0.02 0.77 16 36 H 0.06 1.08 8.14 -2.39 -0.02 1.06 16 37 H 0.06 1.09 8.14 -2.39 -0.02 1.07 16 38 H 0.42 4.53 8.47 -92.71 -0.79 3.75 16 39 H 0.12 2.31 8.14 -2.39 -0.02 2.29 16 40 H 0.12 2.31 8.14 -2.39 -0.02 2.29 16 41 H 0.04 1.70 8.10 -2.39 -0.02 1.68 16 42 H 0.04 1.71 8.10 -2.39 -0.02 1.69 16 43 H 0.06 2.36 8.14 -2.39 -0.02 2.34 16 44 H 0.06 2.36 8.14 -2.39 -0.02 2.34 16 45 H -0.02 -0.96 8.14 -2.39 -0.02 -0.98 16 46 H -0.02 -0.94 8.14 -2.39 -0.02 -0.96 16 47 H 0.26 15.57 8.31 -92.71 -0.77 14.80 16 48 H 0.07 0.70 8.14 -2.39 -0.02 0.68 16 49 H 0.07 0.62 8.09 -2.39 -0.02 0.60 16 50 H 0.07 0.71 5.40 -2.39 -0.01 0.70 16 51 H 0.13 1.30 8.06 -2.91 -0.02 1.27 16 Total: -1.00 -77.57 414.77 4.24 -73.33 By element: Atomic # 1 Polarization: 11.05 SS G_CDS: 0.10 Total: 11.14 kcal Atomic # 6 Polarization: -38.98 SS G_CDS: 4.46 Total: -34.53 kcal Atomic # 7 Polarization: -72.26 SS G_CDS: -2.29 Total: -74.55 kcal Atomic # 8 Polarization: -22.36 SS G_CDS: -0.05 Total: -22.41 kcal Atomic # 14 Polarization: 44.99 SS G_CDS: 2.03 Total: 47.02 kcal Total: -77.57 4.24 -73.33 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000588147523.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.976 kcal (2) G-P(sol) polarization free energy of solvation -77.569 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.546 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.242 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.328 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.304 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds