Wall clock time and date at job start Tue Mar 31 2020 12:14:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52997 * 109.46903 * 2 1 4 4 C 1.52999 * 109.46901 * 240.00006 * 2 1 3 5 5 C 1.50703 * 109.46771 * 120.00292 * 2 1 3 6 6 C 1.38234 * 120.00257 * 60.00257 * 5 2 1 7 7 C 1.38238 * 119.99675 * 180.27927 * 6 5 2 8 8 C 1.38229 * 120.00124 * 359.45911 * 7 6 5 9 9 C 1.50699 * 120.00230 * 180.28369 * 8 7 6 10 10 N 1.46496 * 109.47288 * 270.27879 * 9 8 7 11 11 C 1.34779 * 120.00299 * 179.97438 * 10 9 8 12 12 O 1.21279 * 119.99453 * 359.97438 * 11 10 9 13 13 C 1.50699 * 120.00003 * 179.97438 * 11 10 9 14 14 C 1.53000 * 109.46819 * 180.02562 * 13 11 10 15 15 C 1.53002 * 109.47027 * 180.02562 * 14 13 11 16 16 C 1.53000 * 109.47027 * 179.97438 * 15 14 13 17 17 C 1.50701 * 109.46956 * 180.02562 * 16 15 14 18 18 H 1.08000 * 120.00289 * 359.97438 * 17 16 15 19 19 C 1.37874 * 120.00056 * 180.02562 * 17 16 15 20 20 N 1.31520 * 120.00022 * 359.97438 * 19 17 16 21 21 Si 1.86801 * 120.00140 * 179.97438 * 19 17 16 22 22 H 1.48505 * 109.46951 * 90.00146 * 21 19 17 23 23 H 1.48497 * 109.47188 * 209.99779 * 21 19 17 24 24 H 1.48495 * 109.47257 * 330.00102 * 21 19 17 25 25 C 1.38234 * 119.99957 * 0.56005 * 8 7 6 26 26 C 1.38234 * 119.99503 * 240.01857 * 5 2 1 27 27 H 1.09007 * 109.47341 * 299.99607 * 1 2 3 28 28 H 1.08998 * 109.47273 * 59.99893 * 1 2 3 29 29 H 1.09001 * 109.47339 * 180.02562 * 1 2 3 30 30 H 1.09005 * 109.46371 * 179.97438 * 3 2 1 31 31 H 1.08998 * 109.47244 * 300.00125 * 3 2 1 32 32 H 1.08999 * 109.46950 * 60.00346 * 3 2 1 33 33 H 1.09001 * 109.46958 * 300.00030 * 4 2 1 34 34 H 1.08998 * 109.47075 * 59.99980 * 4 2 1 35 35 H 1.08997 * 109.46840 * 179.97438 * 4 2 1 36 36 H 1.08002 * 119.99744 * 359.97438 * 6 5 2 37 37 H 1.08004 * 119.99577 * 179.72816 * 7 6 5 38 38 H 1.09007 * 109.47085 * 30.27493 * 9 8 7 39 39 H 1.08998 * 109.47270 * 150.26989 * 9 8 7 40 40 H 0.97001 * 119.99949 * 359.97438 * 10 9 8 41 41 H 1.08995 * 109.47105 * 299.99869 * 13 11 10 42 42 H 1.09003 * 109.46939 * 60.00739 * 13 11 10 43 43 H 1.09007 * 109.47298 * 300.00073 * 14 13 11 44 44 H 1.08993 * 109.47313 * 60.00159 * 14 13 11 45 45 H 1.09000 * 109.47128 * 299.99722 * 15 14 13 46 46 H 1.09002 * 109.46996 * 59.99766 * 15 14 13 47 47 H 1.09007 * 109.47298 * 299.99696 * 16 15 14 48 48 H 1.08993 * 109.47313 * 59.99782 * 16 15 14 49 49 H 0.97003 * 120.00296 * 179.97438 * 20 19 17 50 50 H 1.08001 * 120.00274 * 179.72697 * 25 8 7 51 51 H 1.07997 * 120.00460 * 0.02562 * 26 5 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2493 5 6 2.0323 -0.7105 1.2305 6 6 1.6983 -2.0340 1.4492 7 6 2.1544 -2.6839 2.5808 8 6 2.9534 -2.0137 3.4880 9 6 3.4558 -2.7241 4.7185 10 7 2.4907 -2.5561 5.8077 11 6 2.7310 -3.1101 7.0126 12 8 3.7462 -3.7482 7.1949 13 6 1.7384 -2.9368 8.1331 14 6 2.2484 -3.6582 9.3823 15 6 1.2404 -3.4827 10.5198 16 6 1.7501 -4.2046 11.7688 17 6 0.7569 -4.0323 12.8891 18 1 -0.1472 -3.4644 12.7266 19 6 1.0030 -4.5989 14.1217 20 7 2.1042 -5.2901 14.3197 21 14 -0.2278 -4.3847 15.5105 22 1 -1.2135 -5.4949 15.4739 23 1 0.4869 -4.4002 16.8121 24 1 -0.9353 -3.0891 15.3496 25 6 3.2870 -0.6901 3.2695 26 6 2.8267 -0.0386 2.1406 27 1 -0.3634 0.5138 0.8901 28 1 -0.3634 0.5138 -0.8899 29 1 -0.3634 -1.0277 0.0005 30 1 3.1300 1.4424 0.0005 31 1 1.6766 1.9563 -0.8899 32 1 1.6766 1.9563 0.8900 33 1 1.6766 -1.7489 -1.2492 34 1 1.6766 -0.2074 -2.1392 35 1 3.1299 -0.7208 -1.2495 36 1 1.0771 -2.5587 0.7384 37 1 1.8898 -3.7166 2.7539 38 1 3.5773 -3.7854 4.5012 39 1 4.4159 -2.3019 5.0152 40 1 1.6786 -2.0461 5.6617 41 1 1.6177 -1.8756 8.3507 42 1 0.7781 -3.3585 7.8363 43 1 2.3695 -4.7195 9.1651 44 1 3.2086 -3.2362 9.6790 45 1 1.1189 -2.4215 10.7372 46 1 0.2804 -3.9050 10.2229 47 1 1.8712 -5.2658 11.5512 48 1 2.7102 -3.7828 12.0659 49 1 2.2775 -5.6884 15.1871 50 1 3.9077 -0.1652 3.9806 51 1 3.0870 0.9956 1.9701 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000588154679.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:14:52 Heat of formation + Delta-G solvation = -77.234700 kcal Electronic energy + Delta-G solvation = -24919.046131 eV Core-core repulsion = 21394.610358 eV Total energy + Delta-G solvation = -3524.435773 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 317.210 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.13615 -40.50797 -37.78526 -36.64211 -35.49874 -34.59963 -32.08621 -32.04553 -31.05241 -28.23430 -28.08668 -27.92755 -26.50968 -24.09074 -23.28490 -22.72245 -21.79250 -21.29424 -20.07868 -18.42266 -18.22789 -17.36266 -17.02681 -16.77033 -16.46270 -16.39923 -15.76900 -15.52326 -15.13443 -14.98417 -14.60981 -14.55359 -14.49404 -14.39117 -13.99841 -13.65157 -13.56295 -13.41069 -13.28429 -12.95217 -12.87318 -12.80464 -12.56042 -12.52429 -12.33368 -12.26060 -12.14980 -12.12019 -11.82626 -11.51878 -11.37222 -11.36178 -11.35478 -11.17053 -10.83351 -10.54333 -10.13735 -9.82863 -9.54339 -8.18017 -6.30348 0.27528 0.49209 1.40714 1.43100 1.54192 1.65313 2.24343 2.42658 2.89892 3.14577 3.58576 3.77829 3.79169 3.89240 4.04382 4.07959 4.12758 4.13289 4.16249 4.38994 4.40862 4.52986 4.60723 4.68348 4.70899 4.74609 4.79832 4.83744 4.85407 4.89483 4.91639 5.00280 5.03343 5.05232 5.14477 5.16797 5.20297 5.25417 5.34034 5.34680 5.37776 5.43338 5.44699 5.56186 5.58048 5.65150 5.74456 5.78898 5.88706 6.06798 6.25975 6.55047 6.88046 7.26425 7.39272 8.94137 Molecular weight = 317.21amu Principal moments of inertia in cm(-1) A = 0.029842 B = 0.001583 C = 0.001546 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 938.049564 B =17681.252324 C =18112.395043 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.032 4.032 3 C -0.145 4.145 4 C -0.138 4.138 5 C -0.065 4.065 6 C -0.122 4.122 7 C -0.103 4.103 8 C -0.117 4.117 9 C 0.163 3.837 10 N -0.714 5.714 11 C 0.511 3.489 12 O -0.588 6.588 13 C -0.128 4.128 14 C -0.096 4.096 15 C -0.096 4.096 16 C 0.018 3.982 17 C -0.543 4.543 18 H 0.066 0.934 19 C -0.006 4.006 20 N -0.937 5.937 21 Si 0.970 3.030 22 H -0.272 1.272 23 H -0.284 1.284 24 H -0.259 1.259 25 C -0.104 4.104 26 C -0.129 4.129 27 H 0.051 0.949 28 H 0.067 0.933 29 H 0.058 0.942 30 H 0.058 0.942 31 H 0.066 0.934 32 H 0.059 0.941 33 H 0.058 0.942 34 H 0.068 0.932 35 H 0.051 0.949 36 H 0.135 0.865 37 H 0.128 0.872 38 H 0.065 0.935 39 H 0.065 0.935 40 H 0.415 0.585 41 H 0.118 0.882 42 H 0.118 0.882 43 H 0.043 0.957 44 H 0.043 0.957 45 H 0.061 0.939 46 H 0.061 0.939 47 H -0.015 1.015 48 H -0.015 1.015 49 H 0.263 0.737 50 H 0.128 0.872 51 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.574 14.605 -36.317 39.306 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.032 4.032 3 C -0.202 4.202 4 C -0.195 4.195 5 C -0.065 4.065 6 C -0.140 4.140 7 C -0.122 4.122 8 C -0.117 4.117 9 C 0.040 3.960 10 N -0.367 5.367 11 C 0.300 3.700 12 O -0.468 6.468 13 C -0.167 4.167 14 C -0.134 4.134 15 C -0.133 4.133 16 C -0.019 4.019 17 C -0.581 4.581 18 H 0.084 0.916 19 C -0.204 4.204 20 N -0.578 5.578 21 Si 0.794 3.206 22 H -0.197 1.197 23 H -0.209 1.209 24 H -0.183 1.183 25 C -0.122 4.122 26 C -0.146 4.146 27 H 0.071 0.929 28 H 0.086 0.914 29 H 0.077 0.923 30 H 0.077 0.923 31 H 0.085 0.915 32 H 0.078 0.922 33 H 0.077 0.923 34 H 0.087 0.913 35 H 0.070 0.930 36 H 0.152 0.848 37 H 0.146 0.854 38 H 0.083 0.917 39 H 0.083 0.917 40 H 0.252 0.748 41 H 0.136 0.864 42 H 0.136 0.864 43 H 0.061 0.939 44 H 0.061 0.939 45 H 0.079 0.921 46 H 0.079 0.921 47 H 0.003 0.997 48 H 0.003 0.997 49 H 0.071 0.929 50 H 0.146 0.854 51 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -2.756 14.065 -36.081 38.823 hybrid contribution -0.244 -0.245 1.053 1.108 sum -3.000 13.820 -35.028 37.775 Atomic orbital electron populations 1.21890 0.93133 1.02282 1.02213 1.19573 0.96088 0.95367 0.92135 1.21975 1.01228 0.94516 1.02493 1.21890 1.00922 1.00390 0.96334 1.20116 0.96349 0.94010 0.96013 1.21152 1.00636 0.94590 0.97595 1.21202 0.96629 1.00322 0.94044 1.19735 1.00758 0.94955 0.96288 1.20097 0.92054 0.99788 0.84049 1.45999 1.25139 1.55244 1.10311 1.21215 0.87016 0.77585 0.84221 1.90698 1.30348 1.42529 1.83272 1.21670 0.98752 1.04482 0.91810 1.21249 0.98426 0.99684 0.94078 1.21452 0.97924 1.00208 0.93759 1.19068 0.95121 0.94217 0.93544 1.21765 1.06454 1.32887 0.96986 0.91569 1.26093 0.97534 0.94785 1.01947 1.70138 1.27263 1.35963 1.24406 0.85374 0.78493 0.79138 0.77581 1.19708 1.20921 1.18345 1.21234 0.99416 0.93749 0.97821 1.21382 0.98248 1.00990 0.94001 0.92936 0.91360 0.92312 0.92251 0.91501 0.92197 0.92315 0.91324 0.93018 0.84757 0.85376 0.91683 0.91679 0.74804 0.86388 0.86379 0.93860 0.93851 0.92073 0.92062 0.99691 0.99674 0.92876 0.85381 0.84233 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.08 8.29 71.98 0.60 -0.49 16 2 C -0.03 -0.27 0.85 -52.93 -0.05 -0.32 16 3 C -0.15 -1.06 7.13 71.98 0.51 -0.54 16 4 C -0.14 -1.08 8.29 71.98 0.60 -0.48 16 5 C -0.06 -0.77 4.76 -19.87 -0.09 -0.86 16 6 C -0.12 -1.51 8.71 22.27 0.19 -1.31 16 7 C -0.10 -1.46 9.70 22.27 0.22 -1.25 16 8 C -0.12 -1.82 5.25 -19.87 -0.10 -1.92 16 9 C 0.16 3.17 5.80 85.63 0.50 3.66 16 10 N -0.71 -14.00 5.55 -466.79 -2.59 -16.59 16 11 C 0.51 14.18 7.83 87.66 0.69 14.86 16 12 O -0.59 -22.40 15.98 -3.03 -0.05 -22.44 16 13 C -0.13 -3.22 5.70 29.85 0.17 -3.05 16 14 C -0.10 -3.54 4.50 30.59 0.14 -3.41 16 15 C -0.10 -3.98 5.15 30.59 0.16 -3.82 16 16 C 0.02 0.98 4.97 29.85 0.15 1.13 16 17 C -0.54 -31.84 9.11 25.60 0.23 -31.60 16 18 H 0.07 3.63 7.74 -2.91 -0.02 3.61 16 19 C -0.01 -0.38 5.46 84.65 0.46 0.08 16 20 N -0.94 -59.43 13.29 21.45 0.28 -59.15 16 21 Si 0.97 45.12 29.54 68.60 2.03 47.15 16 22 H -0.27 -12.16 7.11 99.48 0.71 -11.46 16 23 H -0.28 -12.95 7.11 99.48 0.71 -12.24 16 24 H -0.26 -11.36 7.11 99.48 0.71 -10.65 16 25 C -0.10 -1.47 9.70 22.27 0.22 -1.26 16 26 C -0.13 -1.60 8.98 22.27 0.20 -1.40 16 27 H 0.05 0.47 8.14 -2.38 -0.02 0.45 16 28 H 0.07 0.41 8.14 -2.39 -0.02 0.39 16 29 H 0.06 0.45 7.39 -2.39 -0.02 0.43 16 30 H 0.06 0.44 7.51 -2.38 -0.02 0.42 16 31 H 0.07 0.39 8.14 -2.39 -0.02 0.37 16 32 H 0.06 0.44 7.51 -2.39 -0.02 0.42 16 33 H 0.06 0.45 7.39 -2.39 -0.02 0.43 16 34 H 0.07 0.41 8.14 -2.39 -0.02 0.39 16 35 H 0.05 0.47 8.14 -2.39 -0.02 0.45 16 36 H 0.13 1.26 7.10 -2.91 -0.02 1.24 16 37 H 0.13 1.63 8.06 -2.91 -0.02 1.61 16 38 H 0.06 1.39 8.09 -2.38 -0.02 1.37 16 39 H 0.06 1.39 8.09 -2.39 -0.02 1.37 16 40 H 0.42 5.76 8.46 -92.71 -0.78 4.98 16 41 H 0.12 2.38 8.14 -2.39 -0.02 2.36 16 42 H 0.12 2.38 8.14 -2.39 -0.02 2.36 16 43 H 0.04 1.74 8.10 -2.38 -0.02 1.72 16 44 H 0.04 1.75 8.10 -2.39 -0.02 1.73 16 45 H 0.06 2.36 8.14 -2.39 -0.02 2.34 16 46 H 0.06 2.36 8.14 -2.39 -0.02 2.35 16 47 H -0.02 -0.93 8.14 -2.38 -0.02 -0.95 16 48 H -0.02 -0.92 8.14 -2.39 -0.02 -0.94 16 49 H 0.26 15.59 8.31 -92.71 -0.77 14.82 16 50 H 0.13 1.64 8.06 -2.91 -0.02 1.62 16 51 H 0.14 1.33 5.89 -2.91 -0.02 1.31 16 Total: -1.00 -75.26 411.23 4.55 -70.72 By element: Atomic # 1 Polarization: 12.20 SS G_CDS: 0.10 Total: 12.30 kcal Atomic # 6 Polarization: -36.76 SS G_CDS: 4.78 Total: -31.98 kcal Atomic # 7 Polarization: -73.44 SS G_CDS: -2.30 Total: -75.74 kcal Atomic # 8 Polarization: -22.40 SS G_CDS: -0.05 Total: -22.44 kcal Atomic # 14 Polarization: 45.12 SS G_CDS: 2.03 Total: 47.15 kcal Total: -75.26 4.55 -70.72 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000588154679.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.520 kcal (2) G-P(sol) polarization free energy of solvation -75.265 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.784 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.550 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.715 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.235 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds