Wall clock time and date at job start Tue Mar 31 2020 11:18:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38234 * 120.00260 * 2 1 4 4 C 1.38234 * 120.00240 * 179.97438 * 3 2 1 5 5 C 1.38233 * 120.00037 * 0.26327 * 4 3 2 6 6 C 1.50693 * 120.00207 * 179.72405 * 5 4 3 7 7 C 1.52998 * 109.47282 * 299.99654 * 6 5 4 8 8 C 1.53003 * 109.47218 * 59.99579 * 6 5 4 9 9 C 1.52999 * 109.47331 * 179.97438 * 6 5 4 10 10 N 1.46500 * 109.47528 * 179.97438 * 9 6 5 11 11 C 1.34773 * 120.00431 * 179.97438 * 10 9 6 12 12 O 1.21283 * 119.99618 * 0.02562 * 11 10 9 13 13 C 1.50698 * 119.99908 * 180.02562 * 11 10 9 14 14 C 1.53005 * 109.46716 * 180.02562 * 13 11 10 15 15 C 1.53003 * 109.46699 * 180.02562 * 14 13 11 16 16 C 1.53005 * 109.46699 * 180.02562 * 15 14 13 17 17 C 1.50707 * 109.46911 * 179.97438 * 16 15 14 18 18 H 1.08002 * 119.99770 * 359.97438 * 17 16 15 19 19 C 1.37871 * 119.99748 * 179.97438 * 17 16 15 20 20 N 1.31514 * 120.00481 * 0.02562 * 19 17 16 21 21 Si 1.86801 * 119.99745 * 179.97438 * 19 17 16 22 22 H 1.48494 * 109.47231 * 0.02562 * 21 19 17 23 23 H 1.48507 * 109.47061 * 120.00455 * 21 19 17 24 24 H 1.48498 * 109.47430 * 239.99996 * 21 19 17 25 25 C 1.38238 * 119.99752 * 359.47832 * 5 4 3 26 26 C 1.38234 * 120.00033 * 0.49775 * 25 5 4 27 27 H 1.09000 * 109.46827 * 89.99810 * 1 2 3 28 28 H 1.08999 * 109.47240 * 210.00239 * 1 2 3 29 29 H 1.08999 * 109.46861 * 329.99859 * 1 2 3 30 30 H 1.07999 * 119.99751 * 359.97438 * 3 2 1 31 31 H 1.08002 * 119.99744 * 179.97438 * 4 3 2 32 32 H 1.08994 * 109.47122 * 59.99428 * 7 6 5 33 33 H 1.08990 * 109.47488 * 180.02562 * 7 6 5 34 34 H 1.09001 * 109.46885 * 299.99961 * 7 6 5 35 35 H 1.08995 * 109.47325 * 59.99840 * 8 6 5 36 36 H 1.09003 * 109.47092 * 180.02562 * 8 6 5 37 37 H 1.09001 * 109.46873 * 299.99885 * 8 6 5 38 38 H 1.09001 * 109.47089 * 300.00304 * 9 6 5 39 39 H 1.09001 * 109.47054 * 59.99906 * 9 6 5 40 40 H 0.97000 * 119.99456 * 0.02562 * 10 9 6 41 41 H 1.09003 * 109.47112 * 299.99558 * 13 11 10 42 42 H 1.08993 * 109.47444 * 59.99934 * 13 11 10 43 43 H 1.09003 * 109.46946 * 299.99056 * 14 13 11 44 44 H 1.08993 * 109.47679 * 59.99513 * 14 13 11 45 45 H 1.09003 * 109.46895 * 299.98850 * 15 14 13 46 46 H 1.08993 * 109.47678 * 59.99237 * 15 14 13 47 47 H 1.09003 * 109.46946 * 299.98780 * 16 15 14 48 48 H 1.09001 * 109.47524 * 59.99516 * 16 15 14 49 49 H 0.96995 * 120.00207 * 179.97438 * 20 19 17 50 50 H 1.07999 * 119.99934 * 180.25938 * 25 5 4 51 51 H 1.08001 * 120.00294 * 179.76453 * 26 25 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1982 1.1971 0.0000 4 6 3.5806 1.1971 0.0005 5 6 4.2717 0.0000 -0.0044 6 6 5.7787 0.0000 -0.0101 7 6 6.2840 0.7236 -1.2599 8 6 6.2934 0.7188 1.2385 9 6 6.2887 -1.4425 -0.0142 10 7 7.7537 -1.4426 -0.0204 11 6 8.4275 -2.6097 -0.0243 12 8 7.8211 -3.6601 -0.0232 13 6 9.9345 -2.6097 -0.0301 14 6 10.4445 -4.0523 -0.0343 15 6 11.9745 -4.0522 -0.0395 16 6 12.4845 -5.4948 -0.0444 17 6 13.9915 -5.4948 -0.0501 18 1 14.5315 -4.5594 -0.0507 19 6 14.6808 -6.6888 -0.0547 20 7 14.0233 -7.8278 -0.0545 21 14 16.5488 -6.6888 -0.0625 22 1 17.0438 -5.2888 -0.0621 23 1 17.0489 -7.3906 1.1469 24 1 17.0388 -7.3871 -1.2780 25 6 3.5805 -1.1972 0.0010 26 6 2.1982 -1.1972 0.0009 27 1 -0.3633 0.0000 -1.0277 28 1 -0.3633 -0.8899 0.5139 29 1 -0.3633 0.8900 0.5139 30 1 1.6582 2.1324 -0.0004 31 1 4.1205 2.1325 0.0001 32 1 5.9206 1.7511 -1.2566 33 1 7.3739 0.7232 -1.2643 34 1 5.9173 0.2114 -2.1495 35 1 5.9335 0.2034 2.1289 36 1 7.3835 0.7192 1.2342 37 1 5.9301 1.7465 1.2418 38 1 5.9287 -1.9577 0.8763 39 1 5.9220 -1.9550 -0.9036 40 1 8.2386 -0.6025 -0.0209 41 1 10.2944 -2.0949 -0.9209 42 1 10.3013 -2.0969 0.8590 43 1 10.0846 -4.5674 0.8564 44 1 10.0777 -4.5647 -0.9236 45 1 12.3348 -3.5370 -0.9300 46 1 12.3409 -3.5398 0.8500 47 1 12.1243 -6.0104 0.8458 48 1 12.1180 -6.0067 -0.9342 49 1 14.5083 -8.6678 -0.0581 50 1 4.1205 -2.1325 0.0013 51 1 1.6582 -2.1325 0.0013 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000588156517.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:18:51 Heat of formation + Delta-G solvation = -56.659623 kcal Electronic energy + Delta-G solvation = -25387.761646 eV Core-core repulsion = 21864.218074 eV Total energy + Delta-G solvation = -3523.543571 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 317.210 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -40.59646 -39.45748 -37.31293 -34.86736 -33.87834 -32.59005 -31.87723 -31.35431 -29.76603 -27.67838 -27.36261 -26.80273 -25.19654 -22.81285 -22.44750 -21.86685 -20.33530 -19.95035 -19.53527 -17.21297 -16.54597 -16.19308 -15.89242 -15.83700 -15.33731 -15.10330 -14.89641 -14.42415 -14.18028 -14.07651 -13.90961 -13.78915 -13.74124 -13.40099 -12.99520 -12.63295 -12.57667 -12.37708 -12.17356 -12.15479 -11.95965 -11.70898 -11.65066 -11.55118 -11.40103 -11.05956 -10.97473 -10.84400 -10.50698 -10.46462 -10.38191 -9.78272 -9.58598 -9.25999 -9.19345 -9.10472 -8.94484 -8.82020 -8.28755 -5.93317 -3.95739 0.98910 1.08590 2.77843 3.14826 3.34438 3.39710 3.41586 3.45600 4.16205 4.23842 4.50673 4.55176 4.55952 4.58984 4.67831 4.77188 4.92001 4.99397 5.11353 5.19446 5.20393 5.29437 5.34935 5.35582 5.38532 5.40382 5.41986 5.42385 5.51372 5.53874 5.61892 5.72836 5.76488 5.80102 5.88677 5.90462 6.10426 6.17511 6.26799 6.28316 6.33730 6.37466 6.58453 6.68053 6.87534 7.05619 7.23039 7.46708 7.76799 7.92864 8.08409 8.31042 8.50255 9.12263 9.67906 11.18029 Molecular weight = 317.21amu Principal moments of inertia in cm(-1) A = 0.036433 B = 0.001688 C = 0.001634 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 768.341821 B =16584.139495 C =17134.904268 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.092 4.092 3 C -0.120 4.120 4 C -0.109 4.109 5 C -0.072 4.072 6 C -0.036 4.036 7 C -0.140 4.140 8 C -0.140 4.140 9 C 0.128 3.872 10 N -0.737 5.737 11 C 0.511 3.489 12 O -0.536 6.536 13 C -0.139 4.139 14 C -0.103 4.103 15 C -0.110 4.110 16 C 0.019 3.981 17 C -0.519 4.519 18 H 0.055 0.945 19 C 0.055 3.945 20 N -0.895 5.895 21 Si 0.891 3.109 22 H -0.273 1.273 23 H -0.284 1.284 24 H -0.284 1.284 25 C -0.116 4.116 26 C -0.116 4.116 27 H 0.069 0.931 28 H 0.066 0.934 29 H 0.065 0.935 30 H 0.120 0.880 31 H 0.121 0.879 32 H 0.061 0.939 33 H 0.061 0.939 34 H 0.060 0.940 35 H 0.060 0.940 36 H 0.061 0.939 37 H 0.060 0.940 38 H 0.069 0.931 39 H 0.069 0.931 40 H 0.398 0.602 41 H 0.090 0.910 42 H 0.090 0.910 43 H 0.063 0.937 44 H 0.063 0.937 45 H 0.046 0.954 46 H 0.046 0.954 47 H 0.016 0.984 48 H 0.016 0.984 49 H 0.259 0.741 50 H 0.129 0.871 51 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.193 23.451 0.110 35.157 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.092 4.092 3 C -0.138 4.138 4 C -0.127 4.127 5 C -0.073 4.073 6 C -0.036 4.036 7 C -0.197 4.197 8 C -0.197 4.197 9 C 0.004 3.996 10 N -0.391 5.391 11 C 0.299 3.701 12 O -0.412 6.412 13 C -0.179 4.179 14 C -0.141 4.141 15 C -0.148 4.148 16 C -0.018 4.018 17 C -0.558 4.558 18 H 0.073 0.927 19 C -0.146 4.146 20 N -0.535 5.535 21 Si 0.719 3.281 22 H -0.198 1.198 23 H -0.211 1.211 24 H -0.211 1.211 25 C -0.134 4.134 26 C -0.134 4.134 27 H 0.088 0.912 28 H 0.085 0.915 29 H 0.084 0.916 30 H 0.138 0.862 31 H 0.139 0.861 32 H 0.080 0.920 33 H 0.080 0.920 34 H 0.079 0.921 35 H 0.079 0.921 36 H 0.080 0.920 37 H 0.079 0.921 38 H 0.087 0.913 39 H 0.087 0.913 40 H 0.233 0.767 41 H 0.108 0.892 42 H 0.108 0.892 43 H 0.082 0.918 44 H 0.082 0.918 45 H 0.065 0.935 46 H 0.065 0.935 47 H 0.034 0.966 48 H 0.034 0.966 49 H 0.069 0.931 50 H 0.146 0.854 51 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -26.609 22.487 0.111 34.838 hybrid contribution 1.215 0.322 -0.010 1.257 sum -25.394 22.809 0.101 34.134 Atomic orbital electron populations 1.20795 0.91308 1.02744 1.02305 1.19941 0.96060 0.93268 0.99911 1.20991 0.94091 0.97474 1.01265 1.20907 0.93979 0.97465 1.00322 1.19602 0.93967 0.93378 1.00341 1.19706 0.91501 0.95391 0.96993 1.21905 1.01099 1.00228 0.96453 1.21910 1.01058 1.00259 0.96469 1.21437 0.80478 0.95258 1.02411 1.46149 1.06772 1.09023 1.77160 1.21089 0.90899 0.83114 0.75038 1.90705 1.70622 1.31343 1.48490 1.21791 0.90210 1.01959 1.03910 1.21447 0.97219 0.92506 1.02941 1.21651 0.91906 1.01198 1.00042 1.19110 0.95400 0.89987 0.97327 1.21330 0.92028 0.92206 1.50222 0.92702 1.25041 0.98326 0.95728 0.95490 1.69984 1.35205 0.97203 1.51062 0.86560 0.86049 0.77986 0.77528 1.19787 1.21071 1.21067 1.21246 0.94282 0.98095 0.99773 1.21060 0.94157 0.97605 1.00618 0.91215 0.91534 0.91635 0.86207 0.86112 0.92046 0.92019 0.92083 0.92075 0.92022 0.92052 0.91259 0.91269 0.76660 0.89205 0.89200 0.91831 0.91823 0.93501 0.93492 0.96577 0.96577 0.93122 0.85364 0.86027 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.60 10.01 36.01 0.36 -0.24 16 2 C -0.09 -0.68 5.88 -104.62 -0.62 -1.30 16 3 C -0.12 -0.85 9.70 -39.58 -0.38 -1.24 16 4 C -0.11 -0.78 8.71 -39.58 -0.34 -1.13 16 5 C -0.07 -0.58 4.76 -104.63 -0.50 -1.07 16 6 C -0.04 -0.25 0.61 -155.66 -0.10 -0.35 16 7 C -0.14 -0.88 8.11 37.16 0.30 -0.58 16 8 C -0.14 -0.88 8.11 37.16 0.30 -0.58 16 9 C 0.13 1.22 3.22 -4.04 -0.01 1.21 16 10 N -0.74 -7.32 4.96 -60.29 -0.30 -7.61 16 11 C 0.51 7.14 7.83 -10.99 -0.09 7.05 16 12 O -0.54 -9.86 15.98 5.55 0.09 -9.77 16 13 C -0.14 -1.85 5.70 -27.88 -0.16 -2.01 16 14 C -0.10 -1.87 4.50 -26.73 -0.12 -1.99 16 15 C -0.11 -2.30 5.15 -26.73 -0.14 -2.44 16 16 C 0.02 0.51 4.97 -27.88 -0.14 0.37 16 17 C -0.52 -15.11 9.11 -34.44 -0.31 -15.43 16 18 H 0.05 1.54 7.74 -52.49 -0.41 1.13 16 19 C 0.05 1.62 5.46 -17.82 -0.10 1.52 16 20 N -0.89 -27.71 13.29 55.43 0.74 -26.97 16 21 Si 0.89 22.04 29.54 -169.99 -5.02 17.01 16 22 H -0.27 -6.57 7.11 56.52 0.40 -6.17 16 23 H -0.28 -6.96 7.11 56.52 0.40 -6.56 16 24 H -0.28 -6.96 7.11 56.52 0.40 -6.55 16 25 C -0.12 -1.01 8.98 -39.58 -0.36 -1.36 16 26 C -0.12 -0.94 9.70 -39.58 -0.38 -1.33 16 27 H 0.07 0.32 8.14 -51.93 -0.42 -0.10 16 28 H 0.07 0.31 8.09 -51.93 -0.42 -0.11 16 29 H 0.06 0.28 8.09 -51.93 -0.42 -0.14 16 30 H 0.12 0.63 8.06 -52.49 -0.42 0.21 16 31 H 0.12 0.67 7.10 -52.49 -0.37 0.30 16 32 H 0.06 0.33 7.39 -51.93 -0.38 -0.05 16 33 H 0.06 0.35 6.86 -51.93 -0.36 -0.01 16 34 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 35 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 36 H 0.06 0.35 6.86 -51.93 -0.36 -0.01 16 37 H 0.06 0.33 7.39 -51.93 -0.38 -0.05 16 38 H 0.07 0.74 7.50 -51.93 -0.39 0.35 16 39 H 0.07 0.74 7.52 -51.93 -0.39 0.35 16 40 H 0.40 2.86 6.16 -40.82 -0.25 2.61 16 41 H 0.09 1.03 8.14 -51.93 -0.42 0.61 16 42 H 0.09 1.03 8.14 -51.93 -0.42 0.61 16 43 H 0.06 1.23 8.10 -51.93 -0.42 0.81 16 44 H 0.06 1.24 8.10 -51.93 -0.42 0.81 16 45 H 0.05 0.94 8.14 -51.93 -0.42 0.51 16 46 H 0.05 0.94 8.14 -51.93 -0.42 0.51 16 47 H 0.02 0.46 8.14 -51.93 -0.42 0.03 16 48 H 0.02 0.46 8.14 -51.93 -0.42 0.03 16 49 H 0.26 7.53 8.31 -40.82 -0.34 7.19 16 50 H 0.13 1.12 5.90 -52.49 -0.31 0.81 16 51 H 0.12 0.82 8.06 -52.49 -0.42 0.40 16 LS Contribution 406.12 15.07 6.12 6.12 Total: -1.00 -34.32 406.12 -10.22 -44.54 By element: Atomic # 1 Polarization: 6.64 SS G_CDS: -9.07 Total: -2.42 kcal Atomic # 6 Polarization: -18.12 SS G_CDS: -2.78 Total: -20.89 kcal Atomic # 7 Polarization: -35.03 SS G_CDS: 0.44 Total: -34.59 kcal Atomic # 8 Polarization: -9.86 SS G_CDS: 0.09 Total: -9.77 kcal Atomic # 14 Polarization: 22.04 SS G_CDS: -5.02 Total: 17.01 kcal Total LS contribution 6.12 Total: 6.12 kcal Total: -34.32 -10.22 -44.54 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000588156517.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.117 kcal (2) G-P(sol) polarization free energy of solvation -34.322 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.439 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.220 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.542 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.660 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds