Wall clock time and date at job start Tue Mar 31 2020 11:19:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.38258 * 120.00342 * 2 1 4 4 C 1.38206 * 119.99881 * 179.97438 * 3 2 1 5 5 C 1.38255 * 120.00327 * 0.02662 * 4 3 2 6 6 C 1.50702 * 120.00166 * 179.97438 * 5 4 3 7 7 C 1.53004 * 109.47006 * 265.00084 * 6 5 4 8 8 H 1.08995 * 109.47216 * 304.99910 * 7 6 5 9 9 C 1.52999 * 109.47083 * 184.99905 * 7 6 5 10 10 N 1.46498 * 109.47065 * 64.99799 * 7 6 5 11 11 C 1.34777 * 119.99828 * 204.72115 * 10 7 6 12 12 O 1.21283 * 120.00222 * 0.28168 * 11 10 7 13 13 C 1.50703 * 120.00290 * 180.27728 * 11 10 7 14 14 C 1.52990 * 109.47398 * 180.02562 * 13 11 10 15 15 C 1.52995 * 109.47353 * 179.97438 * 14 13 11 16 16 C 1.52997 * 109.47600 * 180.02562 * 15 14 13 17 17 C 1.50703 * 109.47646 * 180.02562 * 16 15 14 18 18 H 1.08001 * 119.99463 * 359.97438 * 17 16 15 19 19 C 1.37871 * 120.00445 * 180.02562 * 17 16 15 20 20 N 1.31514 * 120.00126 * 180.02562 * 19 17 16 21 21 Si 1.86800 * 119.99943 * 0.02562 * 19 17 16 22 22 H 1.48501 * 109.47483 * 89.99798 * 21 19 17 23 23 H 1.48499 * 109.47134 * 210.00313 * 21 19 17 24 24 H 1.48507 * 109.46904 * 330.00135 * 21 19 17 25 25 C 1.38212 * 119.99543 * 0.25200 * 5 4 3 26 26 C 1.50704 * 119.99686 * 179.72658 * 25 5 4 27 27 C 1.38215 * 119.99449 * 179.97438 * 2 1 3 28 28 H 1.08998 * 109.47243 * 89.99536 * 1 2 3 29 29 H 1.08998 * 109.47347 * 210.00198 * 1 2 3 30 30 H 1.09000 * 109.46884 * 329.99765 * 1 2 3 31 31 H 1.08000 * 119.99845 * 359.97438 * 3 2 1 32 32 H 1.08002 * 119.99914 * 179.97438 * 4 3 2 33 33 H 1.08993 * 109.47006 * 145.00243 * 6 5 4 34 34 H 1.08998 * 109.46979 * 24.99835 * 6 5 4 35 35 H 1.08996 * 109.47245 * 179.97438 * 9 7 6 36 36 H 1.08995 * 109.47098 * 300.00077 * 9 7 6 37 37 H 1.09003 * 109.47054 * 59.99725 * 9 7 6 38 38 H 0.97001 * 120.00384 * 25.00562 * 10 7 6 39 39 H 1.08998 * 109.46954 * 300.00581 * 13 11 10 40 40 H 1.09002 * 109.46946 * 59.99717 * 13 11 10 41 41 H 1.08998 * 109.47508 * 300.00200 * 14 13 11 42 42 H 1.09011 * 109.47182 * 60.00188 * 14 13 11 43 43 H 1.08999 * 109.47616 * 300.00389 * 15 14 13 44 44 H 1.09003 * 109.47280 * 60.00024 * 15 14 13 45 45 H 1.08998 * 109.47382 * 300.00476 * 16 15 14 46 46 H 1.09005 * 109.46800 * 60.00677 * 16 15 14 47 47 H 0.97005 * 120.00032 * 179.97438 * 20 19 17 48 48 H 1.08997 * 109.47606 * 89.99399 * 26 25 5 49 49 H 1.08998 * 109.47102 * 210.00118 * 26 25 5 50 50 H 1.09000 * 109.47412 * 329.99579 * 26 25 5 51 51 H 1.07998 * 120.00214 * 359.97438 * 27 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1984 1.1973 0.0000 4 6 3.5805 1.1972 0.0005 5 6 4.2717 -0.0001 0.0005 6 6 5.7787 -0.0002 0.0005 7 6 6.2887 -0.1259 -1.4365 8 1 5.8541 -1.0114 -1.9002 9 6 7.8135 -0.2514 -1.4274 10 7 5.9012 1.0640 -2.1981 11 6 5.7798 0.9962 -3.5387 12 8 5.9864 -0.0513 -4.1140 13 6 5.3872 2.2218 -4.3228 14 6 5.3207 1.8752 -5.8114 15 6 4.9215 3.1193 -6.6074 16 6 4.8543 2.7727 -8.0961 17 6 4.4617 3.9983 -8.8802 18 1 4.2780 4.9311 -8.3678 19 6 4.3360 3.9285 -10.2514 20 7 3.9939 4.9982 -10.9356 21 14 4.6516 2.3145 -11.1373 22 1 3.3849 1.5452 -11.2308 23 1 5.1646 2.5916 -12.5030 24 1 5.6564 1.5236 -10.3821 25 6 3.5805 -1.1970 -0.0053 26 6 4.3340 -2.5022 -0.0116 27 6 2.1980 -1.1970 0.0005 28 1 -0.3633 0.0001 -1.0276 29 1 -0.3634 -0.8899 0.5138 30 1 -0.3633 0.8900 0.5139 31 1 1.6584 2.1326 -0.0004 32 1 4.1205 2.1325 0.0001 33 1 6.1420 -0.8420 0.5899 34 1 6.1421 0.9311 0.4348 35 1 8.1768 -0.3414 -2.4511 36 1 8.2482 0.6341 -0.9638 37 1 8.1019 -1.1368 -0.8608 38 1 5.7359 1.9018 -1.7380 39 1 4.4105 2.5704 -3.9872 40 1 6.1269 3.0066 -4.1647 41 1 6.2972 1.5264 -6.1473 42 1 4.5806 1.0905 -5.9691 43 1 3.9448 3.4678 -6.2715 44 1 5.6611 3.9043 -6.4498 45 1 5.8307 2.4240 -8.4324 46 1 4.1142 1.9879 -8.2533 47 1 3.9058 4.9492 -11.9004 48 1 4.5157 -2.8218 1.0145 49 1 3.7450 -3.2593 -0.5291 50 1 5.2864 -2.3695 -0.5247 51 1 1.6580 -2.1323 0.0014 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000588157504.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:19:58 Heat of formation + Delta-G solvation = -60.842783 kcal Electronic energy + Delta-G solvation = -26086.034022 eV Core-core repulsion = 22562.309055 eV Total energy + Delta-G solvation = -3523.724967 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 317.210 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -40.39260 -39.46898 -36.56667 -34.94306 -33.95848 -32.59565 -32.40706 -31.49576 -29.84449 -28.68657 -27.45165 -25.95102 -25.12462 -22.71499 -22.32867 -21.23644 -20.34184 -20.13137 -19.97948 -16.97223 -16.68302 -16.52705 -16.18610 -15.77774 -15.49763 -15.10348 -14.49779 -14.23842 -14.13057 -13.84692 -13.78428 -13.54932 -13.40084 -13.25416 -12.99787 -12.72809 -12.61946 -12.39884 -12.32104 -12.23206 -12.18438 -11.96925 -11.77861 -11.70871 -11.22366 -11.14973 -11.06503 -11.04197 -10.69710 -10.49842 -9.90354 -9.76914 -9.61383 -9.36630 -9.15824 -9.09007 -8.98846 -8.62926 -8.47125 -5.98419 -3.95677 1.07282 1.15318 2.76754 3.14461 3.37195 3.43588 3.43981 3.50485 4.35714 4.45500 4.52257 4.54502 4.62745 4.69624 4.79384 4.94276 4.99813 5.07508 5.09582 5.21290 5.27099 5.29049 5.29998 5.34308 5.34866 5.37464 5.39298 5.45005 5.46748 5.53820 5.60819 5.74389 5.86230 5.88122 5.95963 6.00388 6.08016 6.19932 6.20637 6.32194 6.37498 6.42978 6.49294 6.72753 6.78427 6.86795 7.02858 7.41476 7.48078 7.54304 7.87321 8.31085 8.60833 9.06678 9.65155 11.15131 Molecular weight = 317.21amu Principal moments of inertia in cm(-1) A = 0.013724 B = 0.002495 C = 0.002288 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2039.672095 B =11218.869555 C =12236.632359 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.086 4.086 3 C -0.123 4.123 4 C -0.107 4.107 5 C -0.087 4.087 6 C -0.089 4.089 7 C 0.145 3.855 8 H 0.089 0.911 9 C -0.164 4.164 10 N -0.729 5.729 11 C 0.514 3.486 12 O -0.538 6.538 13 C -0.139 4.139 14 C -0.105 4.105 15 C -0.102 4.102 16 C -0.015 4.015 17 C -0.519 4.519 18 H 0.071 0.929 19 C 0.064 3.936 20 N -0.907 5.907 21 Si 0.879 3.121 22 H -0.277 1.277 23 H -0.289 1.289 24 H -0.264 1.264 25 C -0.077 4.077 26 C -0.120 4.120 27 C -0.119 4.119 28 H 0.071 0.929 29 H 0.064 0.936 30 H 0.065 0.935 31 H 0.121 0.879 32 H 0.119 0.881 33 H 0.088 0.912 34 H 0.077 0.923 35 H 0.064 0.936 36 H 0.057 0.943 37 H 0.063 0.937 38 H 0.397 0.603 39 H 0.090 0.910 40 H 0.090 0.910 41 H 0.063 0.937 42 H 0.062 0.938 43 H 0.052 0.948 44 H 0.052 0.948 45 H 0.015 0.985 46 H 0.011 0.989 47 H 0.262 0.738 48 H 0.070 0.930 49 H 0.066 0.934 50 H 0.070 0.930 51 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.451 -12.042 30.794 33.068 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.086 4.086 3 C -0.141 4.141 4 C -0.125 4.125 5 C -0.087 4.087 6 C -0.126 4.126 7 C 0.041 3.959 8 H 0.107 0.893 9 C -0.223 4.223 10 N -0.382 5.382 11 C 0.302 3.698 12 O -0.414 6.414 13 C -0.179 4.179 14 C -0.143 4.143 15 C -0.140 4.140 16 C -0.053 4.053 17 C -0.557 4.557 18 H 0.089 0.911 19 C -0.136 4.136 20 N -0.546 5.546 21 Si 0.707 3.293 22 H -0.203 1.203 23 H -0.215 1.215 24 H -0.189 1.189 25 C -0.077 4.077 26 C -0.176 4.176 27 C -0.137 4.137 28 H 0.090 0.910 29 H 0.083 0.917 30 H 0.084 0.916 31 H 0.139 0.861 32 H 0.137 0.863 33 H 0.106 0.894 34 H 0.095 0.905 35 H 0.083 0.917 36 H 0.076 0.924 37 H 0.082 0.918 38 H 0.231 0.769 39 H 0.108 0.892 40 H 0.109 0.891 41 H 0.081 0.919 42 H 0.081 0.919 43 H 0.071 0.929 44 H 0.071 0.929 45 H 0.034 0.966 46 H 0.029 0.971 47 H 0.072 0.928 48 H 0.088 0.912 49 H 0.085 0.915 50 H 0.089 0.911 51 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges 0.568 -12.757 30.187 32.777 hybrid contribution -0.043 -0.239 -0.350 0.426 sum 0.526 -12.996 29.837 32.549 Atomic orbital electron populations 1.20800 0.91256 1.02605 1.02533 1.19910 0.96070 0.93187 0.99430 1.21000 0.94190 0.97543 1.01372 1.20955 0.94161 0.97198 1.00143 1.19593 0.95043 0.92788 1.01272 1.20930 0.91587 1.03764 0.96339 1.20897 0.94588 0.89900 0.90536 0.89302 1.22201 0.95255 1.01863 1.02967 1.46121 1.71745 1.13155 1.07209 1.21018 0.75927 0.90985 0.81881 1.90687 1.49586 1.31624 1.69531 1.21766 1.03156 0.95560 0.97437 1.21463 1.02487 0.99422 0.90939 1.21473 1.00271 0.95367 0.96882 1.19575 0.96449 0.97222 0.92029 1.21191 1.46188 0.96463 0.91810 0.91121 1.25039 0.94646 0.96289 0.97649 1.69924 1.48832 1.28650 1.07199 0.86775 0.79161 0.84538 0.78838 1.20319 1.21473 1.18884 1.19731 0.93652 0.94868 0.99481 1.20883 1.00413 0.94162 1.02190 1.20890 0.93455 0.97571 1.01815 0.91002 0.91690 0.91559 0.86120 0.86273 0.89393 0.90461 0.91703 0.92405 0.91777 0.76927 0.89161 0.89129 0.91856 0.91896 0.92926 0.92881 0.96636 0.97085 0.92842 0.91173 0.91491 0.91103 0.86268 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.81 10.01 36.01 0.36 -0.45 16 2 C -0.09 -0.78 5.88 -104.62 -0.62 -1.39 16 3 C -0.12 -1.09 9.70 -39.59 -0.38 -1.47 16 4 C -0.11 -0.89 9.36 -39.59 -0.37 -1.26 16 5 C -0.09 -0.74 4.89 -104.62 -0.51 -1.25 16 6 C -0.09 -0.59 4.19 -27.88 -0.12 -0.71 16 7 C 0.15 1.30 2.31 -67.93 -0.16 1.14 16 8 H 0.09 1.01 6.44 -51.93 -0.33 0.68 16 9 C -0.16 -1.35 9.48 37.16 0.35 -1.00 16 10 N -0.73 -7.14 4.67 -53.81 -0.25 -7.39 16 11 C 0.51 7.04 7.79 -10.98 -0.09 6.95 16 12 O -0.54 -9.58 15.65 5.55 0.09 -9.49 16 13 C -0.14 -1.83 5.70 -27.89 -0.16 -1.99 16 14 C -0.11 -1.83 4.50 -26.74 -0.12 -1.95 16 15 C -0.10 -2.06 5.15 -26.73 -0.14 -2.20 16 16 C -0.02 -0.38 4.04 -27.88 -0.11 -0.50 16 17 C -0.52 -15.28 9.66 -34.44 -0.33 -15.61 16 18 H 0.07 2.21 7.99 -52.49 -0.42 1.79 16 19 C 0.06 1.94 5.47 -17.82 -0.10 1.84 16 20 N -0.91 -28.67 13.96 55.43 0.77 -27.90 16 21 Si 0.88 22.63 27.47 -169.99 -4.67 17.96 16 22 H -0.28 -7.01 7.11 56.52 0.40 -6.61 16 23 H -0.29 -7.31 7.11 56.52 0.40 -6.90 16 24 H -0.26 -6.61 6.54 56.52 0.37 -6.24 16 25 C -0.08 -0.70 5.88 -104.62 -0.62 -1.31 16 26 C -0.12 -0.86 9.22 36.01 0.33 -0.53 16 27 C -0.12 -1.09 9.36 -39.58 -0.37 -1.46 16 28 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 29 H 0.06 0.39 8.09 -51.93 -0.42 -0.03 16 30 H 0.07 0.40 8.09 -51.93 -0.42 -0.02 16 31 H 0.12 0.89 8.06 -52.49 -0.42 0.46 16 32 H 0.12 0.76 8.00 -52.49 -0.42 0.34 16 33 H 0.09 0.49 7.01 -51.93 -0.36 0.13 16 34 H 0.08 0.42 8.05 -51.93 -0.42 0.00 16 35 H 0.06 0.70 8.14 -51.93 -0.42 0.27 16 36 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 37 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 38 H 0.40 2.88 8.36 -40.82 -0.34 2.54 16 39 H 0.09 1.06 8.14 -51.93 -0.42 0.63 16 40 H 0.09 1.03 8.14 -51.93 -0.42 0.60 16 41 H 0.06 1.16 8.10 -51.93 -0.42 0.74 16 42 H 0.06 1.16 8.10 -51.92 -0.42 0.74 16 43 H 0.05 1.04 8.14 -51.93 -0.42 0.61 16 44 H 0.05 1.04 8.14 -51.93 -0.42 0.62 16 45 H 0.02 0.39 7.20 -51.93 -0.37 0.02 16 46 H 0.01 0.27 7.57 -51.93 -0.39 -0.12 16 47 H 0.26 7.74 8.31 -40.82 -0.34 7.40 16 48 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 49 H 0.07 0.46 8.09 -51.93 -0.42 0.04 16 50 H 0.07 0.50 5.47 -51.93 -0.28 0.22 16 51 H 0.12 0.92 8.06 -52.49 -0.42 0.49 16 LS Contribution 409.33 15.07 6.17 6.17 Total: -1.00 -35.05 409.33 -10.30 -45.35 By element: Atomic # 1 Polarization: 7.73 SS G_CDS: -9.27 Total: -1.54 kcal Atomic # 6 Polarization: -20.02 SS G_CDS: -3.14 Total: -23.16 kcal Atomic # 7 Polarization: -35.81 SS G_CDS: 0.52 Total: -35.29 kcal Atomic # 8 Polarization: -9.58 SS G_CDS: 0.09 Total: -9.49 kcal Atomic # 14 Polarization: 22.63 SS G_CDS: -4.67 Total: 17.96 kcal Total LS contribution 6.17 Total: 6.17 kcal Total: -35.05 -10.30 -45.35 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000588157504.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.497 kcal (2) G-P(sol) polarization free energy of solvation -35.048 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.545 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.298 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.346 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.843 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds