Wall clock time and date at job start Tue Mar 31 2020 11:19:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.38258 * 120.00342 * 2 1 4 4 C 1.38206 * 119.99881 * 179.97438 * 3 2 1 5 5 C 1.38255 * 120.00327 * 0.02662 * 4 3 2 6 6 C 1.50702 * 120.00166 * 179.97438 * 5 4 3 7 7 C 1.53004 * 109.47006 * 265.00084 * 6 5 4 8 8 H 1.08995 * 109.47216 * 304.99910 * 7 6 5 9 9 C 1.52999 * 109.47083 * 184.99905 * 7 6 5 10 10 N 1.46498 * 109.47065 * 64.99799 * 7 6 5 11 11 C 1.34777 * 119.99828 * 204.72115 * 10 7 6 12 12 O 1.21283 * 120.00222 * 0.28168 * 11 10 7 13 13 C 1.50703 * 120.00290 * 180.27728 * 11 10 7 14 14 C 1.52990 * 109.47398 * 180.02562 * 13 11 10 15 15 C 1.52995 * 109.47353 * 179.97438 * 14 13 11 16 16 C 1.52997 * 109.47600 * 180.02562 * 15 14 13 17 17 C 1.50703 * 109.47646 * 180.02562 * 16 15 14 18 18 H 1.08001 * 119.99463 * 359.97438 * 17 16 15 19 19 C 1.37871 * 120.00445 * 180.02562 * 17 16 15 20 20 N 1.31514 * 120.00126 * 180.02562 * 19 17 16 21 21 Si 1.86800 * 119.99943 * 0.02562 * 19 17 16 22 22 H 1.48501 * 109.47483 * 89.99798 * 21 19 17 23 23 H 1.48499 * 109.47134 * 210.00313 * 21 19 17 24 24 H 1.48507 * 109.46904 * 330.00135 * 21 19 17 25 25 C 1.38212 * 119.99543 * 0.25200 * 5 4 3 26 26 C 1.50704 * 119.99686 * 179.72658 * 25 5 4 27 27 C 1.38215 * 119.99449 * 179.97438 * 2 1 3 28 28 H 1.08998 * 109.47243 * 89.99536 * 1 2 3 29 29 H 1.08998 * 109.47347 * 210.00198 * 1 2 3 30 30 H 1.09000 * 109.46884 * 329.99765 * 1 2 3 31 31 H 1.08000 * 119.99845 * 359.97438 * 3 2 1 32 32 H 1.08002 * 119.99914 * 179.97438 * 4 3 2 33 33 H 1.08993 * 109.47006 * 145.00243 * 6 5 4 34 34 H 1.08998 * 109.46979 * 24.99835 * 6 5 4 35 35 H 1.08996 * 109.47245 * 179.97438 * 9 7 6 36 36 H 1.08995 * 109.47098 * 300.00077 * 9 7 6 37 37 H 1.09003 * 109.47054 * 59.99725 * 9 7 6 38 38 H 0.97001 * 120.00384 * 25.00562 * 10 7 6 39 39 H 1.08998 * 109.46954 * 300.00581 * 13 11 10 40 40 H 1.09002 * 109.46946 * 59.99717 * 13 11 10 41 41 H 1.08998 * 109.47508 * 300.00200 * 14 13 11 42 42 H 1.09011 * 109.47182 * 60.00188 * 14 13 11 43 43 H 1.08999 * 109.47616 * 300.00389 * 15 14 13 44 44 H 1.09003 * 109.47280 * 60.00024 * 15 14 13 45 45 H 1.08998 * 109.47382 * 300.00476 * 16 15 14 46 46 H 1.09005 * 109.46800 * 60.00677 * 16 15 14 47 47 H 0.97005 * 120.00032 * 179.97438 * 20 19 17 48 48 H 1.08997 * 109.47606 * 89.99399 * 26 25 5 49 49 H 1.08998 * 109.47102 * 210.00118 * 26 25 5 50 50 H 1.09000 * 109.47412 * 329.99579 * 26 25 5 51 51 H 1.07998 * 120.00214 * 359.97438 * 27 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1984 1.1973 0.0000 4 6 3.5805 1.1972 0.0005 5 6 4.2717 -0.0001 0.0005 6 6 5.7787 -0.0002 0.0005 7 6 6.2887 -0.1259 -1.4365 8 1 5.8541 -1.0114 -1.9002 9 6 7.8135 -0.2514 -1.4274 10 7 5.9012 1.0640 -2.1981 11 6 5.7798 0.9962 -3.5387 12 8 5.9864 -0.0513 -4.1140 13 6 5.3872 2.2218 -4.3228 14 6 5.3207 1.8752 -5.8114 15 6 4.9215 3.1193 -6.6074 16 6 4.8543 2.7727 -8.0961 17 6 4.4617 3.9983 -8.8802 18 1 4.2780 4.9311 -8.3678 19 6 4.3360 3.9285 -10.2514 20 7 3.9939 4.9982 -10.9356 21 14 4.6516 2.3145 -11.1373 22 1 3.3849 1.5452 -11.2308 23 1 5.1646 2.5916 -12.5030 24 1 5.6564 1.5236 -10.3821 25 6 3.5805 -1.1970 -0.0053 26 6 4.3340 -2.5022 -0.0116 27 6 2.1980 -1.1970 0.0005 28 1 -0.3633 0.0001 -1.0276 29 1 -0.3634 -0.8899 0.5138 30 1 -0.3633 0.8900 0.5139 31 1 1.6584 2.1326 -0.0004 32 1 4.1205 2.1325 0.0001 33 1 6.1420 -0.8420 0.5899 34 1 6.1421 0.9311 0.4348 35 1 8.1768 -0.3414 -2.4511 36 1 8.2482 0.6341 -0.9638 37 1 8.1019 -1.1368 -0.8608 38 1 5.7359 1.9018 -1.7380 39 1 4.4105 2.5704 -3.9872 40 1 6.1269 3.0066 -4.1647 41 1 6.2972 1.5264 -6.1473 42 1 4.5806 1.0905 -5.9691 43 1 3.9448 3.4678 -6.2715 44 1 5.6611 3.9043 -6.4498 45 1 5.8307 2.4240 -8.4324 46 1 4.1142 1.9879 -8.2533 47 1 3.9058 4.9492 -11.9004 48 1 4.5157 -2.8218 1.0145 49 1 3.7450 -3.2593 -0.5291 50 1 5.2864 -2.3695 -0.5247 51 1 1.6580 -2.1323 0.0014 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000588157504.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:19:58 Heat of formation + Delta-G solvation = -80.252259 kcal Electronic energy + Delta-G solvation = -26086.875680 eV Core-core repulsion = 22562.309055 eV Total energy + Delta-G solvation = -3524.566625 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 317.210 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.16474 -40.32844 -37.42564 -36.55720 -34.66424 -34.59093 -33.05326 -32.53714 -31.36138 -29.29384 -28.03054 -27.61803 -25.76140 -24.14176 -23.02044 -22.25142 -21.68712 -21.24292 -20.86807 -18.85869 -17.92585 -17.41620 -16.92686 -16.74705 -16.40812 -16.26141 -15.71338 -15.56441 -15.10384 -14.90686 -14.66613 -14.55646 -14.22854 -13.99248 -13.97401 -13.82891 -13.64012 -13.55664 -13.48901 -13.19628 -12.94548 -12.87337 -12.83922 -12.73380 -12.40973 -12.33386 -12.07890 -11.86431 -11.76226 -11.74028 -11.64611 -11.50867 -11.35721 -11.26762 -10.76702 -10.72604 -10.04272 -9.61674 -9.25340 -8.30332 -6.33339 0.44306 0.52131 1.34097 1.35409 1.48517 1.72590 2.27926 2.35357 2.80842 3.05039 3.75195 3.85058 3.88136 3.98802 4.03430 4.07346 4.11038 4.15061 4.24996 4.40156 4.45167 4.48507 4.62040 4.64879 4.66786 4.71475 4.76628 4.77277 4.78881 4.82453 4.85449 4.88057 4.90735 4.98646 5.05632 5.10784 5.14225 5.20330 5.27204 5.28040 5.36147 5.39355 5.55759 5.58712 5.61766 5.64842 5.68082 5.74003 5.79274 6.18826 6.28975 6.62860 6.74451 7.31517 7.35477 8.86308 Molecular weight = 317.21amu Principal moments of inertia in cm(-1) A = 0.013724 B = 0.002495 C = 0.002288 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2039.672095 B =11218.869555 C =12236.632359 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.102 4.102 3 C -0.139 4.139 4 C -0.113 4.113 5 C -0.098 4.098 6 C -0.078 4.078 7 C 0.146 3.854 8 H 0.062 0.938 9 C -0.160 4.160 10 N -0.711 5.711 11 C 0.513 3.487 12 O -0.587 6.587 13 C -0.132 4.132 14 C -0.096 4.096 15 C -0.093 4.093 16 C -0.016 4.016 17 C -0.530 4.530 18 H 0.037 0.963 19 C 0.004 3.996 20 N -0.950 5.950 21 Si 0.947 3.053 22 H -0.267 1.267 23 H -0.281 1.281 24 H -0.253 1.253 25 C -0.093 4.093 26 C -0.119 4.119 27 C -0.138 4.138 28 H 0.068 0.932 29 H 0.072 0.928 30 H 0.075 0.925 31 H 0.132 0.868 32 H 0.141 0.859 33 H 0.102 0.898 34 H 0.099 0.901 35 H 0.034 0.966 36 H 0.074 0.926 37 H 0.081 0.919 38 H 0.413 0.587 39 H 0.110 0.890 40 H 0.116 0.884 41 H 0.051 0.949 42 H 0.048 0.952 43 H 0.055 0.945 44 H 0.058 0.942 45 H 0.014 0.986 46 H 0.011 0.989 47 H 0.266 0.734 48 H 0.085 0.915 49 H 0.063 0.937 50 H 0.070 0.930 51 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.240 -12.675 32.768 35.156 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.102 4.102 3 C -0.157 4.157 4 C -0.130 4.130 5 C -0.098 4.098 6 C -0.116 4.116 7 C 0.042 3.958 8 H 0.080 0.920 9 C -0.218 4.218 10 N -0.364 5.364 11 C 0.301 3.699 12 O -0.467 6.467 13 C -0.172 4.172 14 C -0.134 4.134 15 C -0.131 4.131 16 C -0.054 4.054 17 C -0.568 4.568 18 H 0.056 0.944 19 C -0.192 4.192 20 N -0.591 5.591 21 Si 0.771 3.229 22 H -0.192 1.192 23 H -0.206 1.206 24 H -0.177 1.177 25 C -0.093 4.093 26 C -0.175 4.175 27 C -0.156 4.156 28 H 0.086 0.914 29 H 0.091 0.909 30 H 0.093 0.907 31 H 0.150 0.850 32 H 0.159 0.841 33 H 0.121 0.879 34 H 0.117 0.883 35 H 0.054 0.946 36 H 0.093 0.907 37 H 0.100 0.900 38 H 0.249 0.751 39 H 0.128 0.872 40 H 0.134 0.866 41 H 0.070 0.930 42 H 0.066 0.934 43 H 0.074 0.926 44 H 0.076 0.924 45 H 0.032 0.968 46 H 0.029 0.971 47 H 0.075 0.925 48 H 0.103 0.897 49 H 0.082 0.918 50 H 0.089 0.911 51 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges 1.356 -13.368 32.220 34.909 hybrid contribution -0.326 0.029 -0.910 0.967 sum 1.030 -13.339 31.311 34.049 Atomic orbital electron populations 1.20817 0.90265 1.03463 1.02519 1.20214 0.97103 0.93411 0.99435 1.21274 0.94829 0.97954 1.01642 1.21270 0.94202 0.98097 0.99474 1.19836 0.96038 0.92687 1.01214 1.20899 0.90336 1.05597 0.94742 1.20937 0.95076 0.88386 0.91438 0.92023 1.22153 0.94439 1.03612 1.01574 1.45979 1.70054 1.14294 1.06061 1.21061 0.75561 0.90277 0.83014 1.90675 1.52084 1.33250 1.70701 1.21673 1.05163 0.96028 0.94342 1.21257 1.01169 0.97342 0.93643 1.21335 1.00791 0.96800 0.94150 1.19570 0.95944 0.95135 0.94732 1.21540 1.45937 0.96916 0.92438 0.94436 1.25981 0.94435 1.00143 0.98668 1.70059 1.50189 1.31099 1.07785 0.85704 0.79651 0.79871 0.77722 1.19250 1.20613 1.17660 1.20050 0.93903 0.95927 0.99395 1.20898 1.00089 0.93427 1.03086 1.21117 0.93966 0.98069 1.02493 0.91361 0.90936 0.90656 0.85035 0.84126 0.87938 0.88263 0.94645 0.90685 0.89987 0.75060 0.87179 0.86612 0.93022 0.93355 0.92601 0.92369 0.96804 0.97062 0.92488 0.89663 0.91782 0.91110 0.85706 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.53 10.01 71.24 0.71 -0.82 16 2 C -0.10 -1.78 5.88 -19.86 -0.12 -1.89 16 3 C -0.14 -2.27 9.70 22.27 0.22 -2.06 16 4 C -0.11 -1.64 9.36 22.27 0.21 -1.43 16 5 C -0.10 -1.48 4.89 -19.87 -0.10 -1.57 16 6 C -0.08 -0.83 4.19 29.85 0.13 -0.70 16 7 C 0.15 2.34 2.31 44.99 0.10 2.44 16 8 H 0.06 1.37 6.44 -2.39 -0.02 1.36 16 9 C -0.16 -2.30 9.48 71.98 0.68 -1.62 16 10 N -0.71 -12.34 4.67 -442.53 -2.07 -14.41 16 11 C 0.51 13.32 7.79 87.66 0.68 14.01 16 12 O -0.59 -20.88 15.65 -3.04 -0.05 -20.93 16 13 C -0.13 -3.19 5.70 29.85 0.17 -3.02 16 14 C -0.10 -3.24 4.50 30.59 0.14 -3.10 16 15 C -0.09 -3.68 5.15 30.59 0.16 -3.52 16 16 C -0.02 -0.81 4.04 29.85 0.12 -0.69 16 17 C -0.53 -31.66 9.66 25.60 0.25 -31.42 16 18 H 0.04 2.41 7.99 -2.91 -0.02 2.39 16 19 C 0.00 0.27 5.47 84.65 0.46 0.73 16 20 N -0.95 -61.01 13.96 21.44 0.30 -60.71 16 21 Si 0.95 46.53 27.47 68.60 1.88 48.41 16 22 H -0.27 -12.65 7.11 99.48 0.71 -11.94 16 23 H -0.28 -13.34 7.11 99.48 0.71 -12.63 16 24 H -0.25 -11.86 6.54 99.48 0.65 -11.20 16 25 C -0.09 -1.58 5.88 -19.87 -0.12 -1.70 16 26 C -0.12 -1.58 9.22 71.24 0.66 -0.92 16 27 C -0.14 -2.48 9.36 22.27 0.21 -2.27 16 28 H 0.07 0.95 8.14 -2.39 -0.02 0.93 16 29 H 0.07 0.83 8.09 -2.39 -0.02 0.81 16 30 H 0.07 0.84 8.09 -2.39 -0.02 0.82 16 31 H 0.13 1.74 8.06 -2.91 -0.02 1.71 16 32 H 0.14 1.31 8.00 -2.91 -0.02 1.29 16 33 H 0.10 0.83 7.01 -2.39 -0.02 0.81 16 34 H 0.10 0.65 8.05 -2.39 -0.02 0.63 16 35 H 0.03 0.73 8.14 -2.39 -0.02 0.71 16 36 H 0.07 0.82 8.14 -2.39 -0.02 0.81 16 37 H 0.08 0.88 8.14 -2.39 -0.02 0.86 16 38 H 0.41 4.57 8.36 -92.71 -0.77 3.80 16 39 H 0.11 2.25 8.14 -2.39 -0.02 2.23 16 40 H 0.12 2.24 8.14 -2.39 -0.02 2.22 16 41 H 0.05 1.85 8.10 -2.39 -0.02 1.83 16 42 H 0.05 1.76 8.10 -2.38 -0.02 1.74 16 43 H 0.06 2.15 8.14 -2.39 -0.02 2.13 16 44 H 0.06 2.22 8.14 -2.39 -0.02 2.20 16 45 H 0.01 0.68 7.20 -2.39 -0.02 0.66 16 46 H 0.01 0.55 7.57 -2.38 -0.02 0.53 16 47 H 0.27 15.91 8.31 -92.70 -0.77 15.14 16 48 H 0.08 0.84 8.14 -2.39 -0.02 0.83 16 49 H 0.06 0.87 8.09 -2.39 -0.02 0.85 16 50 H 0.07 0.93 5.47 -2.39 -0.01 0.92 16 51 H 0.12 1.93 8.06 -2.91 -0.02 1.90 16 Total: -1.00 -77.56 409.33 4.69 -72.87 By element: Atomic # 1 Polarization: 14.27 SS G_CDS: 0.06 Total: 14.32 kcal Atomic # 6 Polarization: -44.12 SS G_CDS: 4.56 Total: -39.56 kcal Atomic # 7 Polarization: -73.35 SS G_CDS: -1.77 Total: -75.12 kcal Atomic # 8 Polarization: -20.88 SS G_CDS: -0.05 Total: -20.93 kcal Atomic # 14 Polarization: 46.53 SS G_CDS: 1.88 Total: 48.41 kcal Total: -77.56 4.69 -72.87 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000588157504.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.382 kcal (2) G-P(sol) polarization free energy of solvation -77.558 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.939 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.687 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.871 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.252 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds