Wall clock time and date at job start Tue Mar 31 2020 11:20:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 C 1.38258 * 120.00138 * 2 1 4 4 C 1.38219 * 120.00163 * 180.02562 * 3 2 1 5 5 C 1.38254 * 119.99906 * 0.06226 * 4 3 2 6 6 C 1.50700 * 120.00063 * 179.97438 * 5 4 3 7 7 C 1.53006 * 109.46827 * 100.43303 * 6 5 4 8 8 H 1.08996 * 109.47448 * 54.78777 * 7 6 5 9 9 C 1.52998 * 109.46871 * 174.78746 * 7 6 5 10 10 N 1.46495 * 109.46895 * 294.78633 * 7 6 5 11 11 C 1.34779 * 120.00134 * 153.87826 * 10 7 6 12 12 O 1.21282 * 119.99720 * 359.97438 * 11 10 7 13 13 C 1.50699 * 120.00270 * 179.97438 * 11 10 7 14 14 C 1.52994 * 109.47037 * 179.97438 * 13 11 10 15 15 C 1.53005 * 109.47161 * 179.97438 * 14 13 11 16 16 C 1.52994 * 109.47161 * 180.02562 * 15 14 13 17 17 C 1.50699 * 109.47037 * 180.02562 * 16 15 14 18 18 H 1.08000 * 120.00175 * 0.02562 * 17 16 15 19 19 C 1.37881 * 120.00004 * 180.02562 * 17 16 15 20 20 N 1.31518 * 119.99986 * 359.97438 * 19 17 16 21 21 Si 1.86798 * 119.99933 * 180.02562 * 19 17 16 22 22 H 1.48504 * 109.47445 * 90.00059 * 21 19 17 23 23 H 1.48506 * 109.47425 * 209.99966 * 21 19 17 24 24 H 1.48502 * 109.47274 * 329.99871 * 21 19 17 25 25 C 1.38214 * 120.00114 * 0.02562 * 5 4 3 26 26 C 1.50697 * 120.00322 * 179.97438 * 25 5 4 27 27 C 1.38217 * 120.00256 * 180.08417 * 2 1 3 28 28 H 1.09006 * 109.47039 * 269.91633 * 1 2 3 29 29 H 1.09010 * 109.46993 * 29.91190 * 1 2 3 30 30 H 1.08994 * 109.47563 * 149.90941 * 1 2 3 31 31 H 1.07994 * 120.00069 * 0.06071 * 3 2 1 32 32 H 1.07993 * 120.00412 * 180.33976 * 4 3 2 33 33 H 1.09006 * 109.47331 * 220.43091 * 6 5 4 34 34 H 1.08991 * 109.47440 * 340.43112 * 6 5 4 35 35 H 1.09004 * 109.47672 * 59.99761 * 9 7 6 36 36 H 1.08998 * 109.47531 * 179.97438 * 9 7 6 37 37 H 1.09001 * 109.47229 * 299.99516 * 9 7 6 38 38 H 0.97001 * 119.99841 * 333.87042 * 10 7 6 39 39 H 1.08993 * 109.47083 * 299.99738 * 13 11 10 40 40 H 1.09000 * 109.46866 * 59.99656 * 13 11 10 41 41 H 1.09003 * 109.47234 * 300.00057 * 14 13 11 42 42 H 1.09000 * 109.47273 * 60.00272 * 14 13 11 43 43 H 1.08993 * 109.47134 * 300.00212 * 15 14 13 44 44 H 1.09000 * 109.46692 * 60.00054 * 15 14 13 45 45 H 1.09003 * 109.47234 * 300.00195 * 16 15 14 46 46 H 1.09000 * 109.47273 * 60.00410 * 16 15 14 47 47 H 0.96999 * 119.99709 * 179.97438 * 20 19 17 48 48 H 1.09004 * 109.47376 * 84.32449 * 26 25 5 49 49 H 1.09000 * 109.47378 * 204.32886 * 26 25 5 50 50 H 1.09004 * 109.47314 * 324.32709 * 26 25 5 51 51 H 1.08006 * 119.99447 * 359.97438 * 27 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1982 1.1973 0.0000 4 6 3.5804 1.1973 -0.0005 5 6 4.2717 0.0000 -0.0024 6 6 5.7787 0.0000 -0.0035 7 6 6.2897 -0.2628 1.4145 8 1 5.8525 -1.1867 1.7930 9 6 7.8141 -0.3921 1.3914 10 7 5.9072 0.8512 2.2856 11 6 5.7594 0.6509 3.6102 12 8 5.9427 -0.4518 4.0809 13 6 5.3665 1.7969 4.5064 14 6 5.2675 1.3036 5.9513 15 6 4.8692 2.4673 6.8613 16 6 4.7707 1.9742 8.3063 17 6 4.3778 3.1202 9.2025 18 1 4.2142 4.1020 8.7833 19 6 4.2272 2.9154 10.5577 20 7 4.4259 1.7197 11.0681 21 14 3.7394 4.3358 11.6685 22 1 2.2591 4.4024 11.7658 23 1 4.3155 4.1269 13.0212 24 1 4.2559 5.6075 11.1016 25 6 3.5806 -1.1970 -0.0042 26 6 4.3340 -2.5021 -0.0068 27 6 2.1981 -1.1970 -0.0018 28 1 -0.3633 -0.0015 1.0277 29 1 -0.3633 0.8909 -0.5125 30 1 -0.3634 -0.8891 -0.5152 31 1 1.6583 2.1326 0.0010 32 1 4.1205 2.1325 0.0050 33 1 6.1415 -0.7816 -0.6712 34 1 6.1418 0.9686 -0.3469 35 1 8.2515 0.5319 1.0130 36 1 8.1783 -0.5788 2.4016 37 1 8.0987 -1.2209 0.7433 38 1 5.7604 1.7330 1.9091 39 1 6.1184 2.5833 4.4414 40 1 4.4006 2.1907 4.1902 41 1 4.5153 0.5173 6.0161 42 1 6.2332 0.9096 6.2677 43 1 5.6215 3.2532 6.7965 44 1 3.9035 2.8618 6.5451 45 1 4.0185 1.1880 8.3715 46 1 5.7366 1.5800 8.6223 47 1 4.3203 1.5757 12.0215 48 1 4.6041 -2.7678 1.0153 49 1 3.7046 -3.2842 -0.4313 50 1 5.2385 -2.3983 -0.6063 51 1 1.6580 -2.1323 -0.0027 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000588157505.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:20:01 Heat of formation + Delta-G solvation = -63.954320 kcal Electronic energy + Delta-G solvation = -26051.042895 eV Core-core repulsion = 22527.183002 eV Total energy + Delta-G solvation = -3523.859893 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 317.210 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -40.33872 -39.41184 -36.50125 -34.80109 -33.90957 -32.61903 -32.39025 -31.40249 -29.45219 -28.63847 -27.41294 -25.67582 -25.07413 -22.80245 -22.34329 -21.30294 -20.29408 -20.15013 -19.89536 -16.86870 -16.59886 -16.14817 -16.11893 -15.72283 -15.42814 -15.06818 -14.49931 -14.40453 -14.09627 -13.79087 -13.69770 -13.55884 -13.37879 -13.15187 -12.96702 -12.68953 -12.50842 -12.35659 -12.17671 -12.16731 -12.07740 -11.76698 -11.62943 -11.53332 -11.18309 -11.09963 -10.98536 -10.95128 -10.49472 -10.46900 -10.36375 -9.70485 -9.57037 -9.17610 -9.09906 -8.95502 -8.94196 -8.59959 -8.27768 -5.92613 -3.94978 1.11001 1.18698 2.83716 3.20729 3.35657 3.41543 3.44875 3.47752 4.38394 4.48849 4.51120 4.59079 4.67075 4.72152 4.82260 5.01100 5.04507 5.08510 5.13133 5.24762 5.30835 5.33768 5.36120 5.39559 5.42305 5.45359 5.47717 5.48671 5.52002 5.56884 5.65019 5.79545 5.90629 5.94338 6.00594 6.04078 6.19675 6.23003 6.36202 6.36846 6.41669 6.50576 6.61003 6.81810 6.89348 7.07381 7.24443 7.54548 7.77359 7.93969 8.09292 8.38073 8.51134 9.12826 9.68447 11.18773 Molecular weight = 317.21amu Principal moments of inertia in cm(-1) A = 0.013795 B = 0.002396 C = 0.002178 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2029.275027 B =11682.072877 C =12855.479170 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.086 4.086 3 C -0.124 4.124 4 C -0.107 4.107 5 C -0.087 4.087 6 C -0.089 4.089 7 C 0.145 3.855 8 H 0.090 0.910 9 C -0.164 4.164 10 N -0.730 5.730 11 C 0.514 3.486 12 O -0.537 6.537 13 C -0.139 4.139 14 C -0.102 4.102 15 C -0.110 4.110 16 C 0.020 3.980 17 C -0.520 4.520 18 H 0.054 0.946 19 C 0.055 3.945 20 N -0.896 5.896 21 Si 0.891 3.109 22 H -0.281 1.281 23 H -0.287 1.287 24 H -0.274 1.274 25 C -0.076 4.076 26 C -0.119 4.119 27 C -0.119 4.119 28 H 0.071 0.929 29 H 0.065 0.935 30 H 0.064 0.936 31 H 0.120 0.880 32 H 0.119 0.881 33 H 0.088 0.912 34 H 0.076 0.924 35 H 0.056 0.944 36 H 0.064 0.936 37 H 0.063 0.937 38 H 0.396 0.604 39 H 0.089 0.911 40 H 0.088 0.912 41 H 0.062 0.938 42 H 0.063 0.937 43 H 0.046 0.954 44 H 0.046 0.954 45 H 0.015 0.985 46 H 0.016 0.984 47 H 0.260 0.740 48 H 0.074 0.926 49 H 0.064 0.936 50 H 0.069 0.931 51 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.453 -4.085 -30.740 31.014 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.086 4.086 3 C -0.142 4.142 4 C -0.125 4.125 5 C -0.087 4.087 6 C -0.126 4.126 7 C 0.040 3.960 8 H 0.108 0.892 9 C -0.222 4.222 10 N -0.383 5.383 11 C 0.302 3.698 12 O -0.413 6.413 13 C -0.179 4.179 14 C -0.140 4.140 15 C -0.148 4.148 16 C -0.017 4.017 17 C -0.558 4.558 18 H 0.072 0.928 19 C -0.146 4.146 20 N -0.535 5.535 21 Si 0.719 3.281 22 H -0.207 1.207 23 H -0.213 1.213 24 H -0.199 1.199 25 C -0.076 4.076 26 C -0.176 4.176 27 C -0.137 4.137 28 H 0.090 0.910 29 H 0.084 0.916 30 H 0.083 0.917 31 H 0.138 0.862 32 H 0.137 0.863 33 H 0.106 0.894 34 H 0.094 0.906 35 H 0.075 0.925 36 H 0.083 0.917 37 H 0.082 0.918 38 H 0.230 0.770 39 H 0.107 0.893 40 H 0.107 0.893 41 H 0.081 0.919 42 H 0.081 0.919 43 H 0.065 0.935 44 H 0.065 0.935 45 H 0.034 0.966 46 H 0.034 0.966 47 H 0.069 0.931 48 H 0.092 0.908 49 H 0.083 0.917 50 H 0.087 0.913 51 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -0.318 -5.002 -30.224 30.637 hybrid contribution -0.406 1.254 0.512 1.415 sum -0.725 -3.747 -29.712 29.956 Atomic orbital electron populations 1.20798 0.91280 1.02569 1.02534 1.19903 0.96052 0.93194 0.99469 1.20989 0.94188 0.97497 1.01496 1.20960 0.94151 0.97190 1.00246 1.19588 0.95055 0.92781 1.01248 1.20939 0.91582 1.03467 0.96617 1.20882 0.94586 0.91647 0.88862 0.89192 1.22197 0.95319 1.01815 1.02911 1.46118 1.71997 1.12596 1.07576 1.21036 0.75865 0.90764 0.82179 1.90690 1.49855 1.25968 1.74749 1.21782 1.02912 0.96495 0.96704 1.21434 1.02517 0.99276 0.90799 1.21645 0.99457 0.95980 0.97674 1.19092 0.97188 0.96381 0.89049 1.21292 1.46308 0.95838 0.92355 0.92775 1.25045 0.95664 0.95572 0.98312 1.69980 1.49874 1.21132 1.12513 0.86616 0.78638 0.82780 0.80072 1.20718 1.21258 1.19929 1.19724 0.93651 0.94893 0.99376 1.20885 0.99981 0.93989 1.02708 1.20901 0.93445 0.97575 1.01756 0.90998 0.91605 0.91686 0.86191 0.86271 0.89354 0.90583 0.92478 0.91724 0.91801 0.76997 0.89305 0.89339 0.91901 0.91872 0.93529 0.93549 0.96628 0.96600 0.93066 0.90757 0.91700 0.91266 0.86257 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.84 10.01 36.00 0.36 -0.48 16 2 C -0.09 -0.81 5.88 -104.63 -0.62 -1.42 16 3 C -0.12 -1.12 9.70 -39.58 -0.38 -1.50 16 4 C -0.11 -0.92 9.67 -39.58 -0.38 -1.31 16 5 C -0.09 -0.77 4.87 -104.63 -0.51 -1.28 16 6 C -0.09 -0.62 4.36 -27.88 -0.12 -0.74 16 7 C 0.14 1.35 2.51 -67.93 -0.17 1.18 16 8 H 0.09 1.06 6.23 -51.93 -0.32 0.73 16 9 C -0.16 -1.41 9.50 37.16 0.35 -1.05 16 10 N -0.73 -7.51 4.79 -53.81 -0.26 -7.77 16 11 C 0.51 7.38 7.81 -10.98 -0.09 7.30 16 12 O -0.54 -9.96 15.63 5.56 0.09 -9.88 16 13 C -0.14 -1.94 5.70 -27.89 -0.16 -2.10 16 14 C -0.10 -1.90 4.50 -26.73 -0.12 -2.02 16 15 C -0.11 -2.33 5.15 -26.73 -0.14 -2.47 16 16 C 0.02 0.54 4.97 -27.89 -0.14 0.40 16 17 C -0.52 -15.21 9.11 -34.44 -0.31 -15.53 16 18 H 0.05 1.52 7.74 -52.49 -0.41 1.12 16 19 C 0.05 1.63 5.46 -17.82 -0.10 1.53 16 20 N -0.90 -27.87 13.29 55.43 0.74 -27.14 16 21 Si 0.89 22.15 29.54 -169.99 -5.02 17.13 16 22 H -0.28 -6.87 7.11 56.52 0.40 -6.46 16 23 H -0.29 -7.05 7.11 56.52 0.40 -6.64 16 24 H -0.27 -6.64 7.11 56.52 0.40 -6.24 16 25 C -0.08 -0.72 5.87 -104.63 -0.61 -1.33 16 26 C -0.12 -0.91 8.93 36.00 0.32 -0.59 16 27 C -0.12 -1.14 9.33 -39.58 -0.37 -1.51 16 28 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 29 H 0.06 0.41 8.09 -51.92 -0.42 -0.01 16 30 H 0.06 0.41 8.09 -51.93 -0.42 -0.01 16 31 H 0.12 0.90 8.06 -52.49 -0.42 0.47 16 32 H 0.12 0.78 8.03 -52.49 -0.42 0.36 16 33 H 0.09 0.52 6.49 -51.93 -0.34 0.18 16 34 H 0.08 0.43 8.00 -51.93 -0.42 0.01 16 35 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 36 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 37 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 38 H 0.40 3.06 8.61 -40.82 -0.35 2.71 16 39 H 0.09 1.07 8.14 -51.93 -0.42 0.65 16 40 H 0.09 1.10 8.14 -51.93 -0.42 0.68 16 41 H 0.06 1.26 8.10 -51.93 -0.42 0.84 16 42 H 0.06 1.25 8.10 -51.93 -0.42 0.83 16 43 H 0.05 0.95 8.14 -51.93 -0.42 0.52 16 44 H 0.05 0.95 8.14 -51.93 -0.42 0.52 16 45 H 0.02 0.45 8.14 -51.93 -0.42 0.02 16 46 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 47 H 0.26 7.59 8.31 -40.82 -0.34 7.26 16 48 H 0.07 0.64 7.44 -51.93 -0.39 0.26 16 49 H 0.06 0.43 8.05 -51.93 -0.42 0.01 16 50 H 0.07 0.43 6.36 -51.93 -0.33 0.10 16 51 H 0.12 0.97 8.06 -52.48 -0.42 0.55 16 LS Contribution 413.06 15.07 6.22 6.22 Total: -1.00 -34.77 413.06 -10.69 -45.46 By element: Atomic # 1 Polarization: 8.17 SS G_CDS: -9.28 Total: -1.11 kcal Atomic # 6 Polarization: -19.74 SS G_CDS: -3.18 Total: -22.92 kcal Atomic # 7 Polarization: -35.39 SS G_CDS: 0.48 Total: -34.91 kcal Atomic # 8 Polarization: -9.96 SS G_CDS: 0.09 Total: -9.88 kcal Atomic # 14 Polarization: 22.15 SS G_CDS: -5.02 Total: 17.13 kcal Total LS contribution 6.22 Total: 6.22 kcal Total: -34.77 -10.69 -45.46 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000588157505.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.490 kcal (2) G-P(sol) polarization free energy of solvation -34.770 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.260 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.695 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.464 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.954 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds