Wall clock time and date at job start Tue Mar 31 2020 11:20:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 C 1.38258 * 120.00138 * 2 1 4 4 C 1.38219 * 120.00163 * 180.02562 * 3 2 1 5 5 C 1.38254 * 119.99906 * 0.06226 * 4 3 2 6 6 C 1.50700 * 120.00063 * 179.97438 * 5 4 3 7 7 C 1.53006 * 109.46827 * 100.43303 * 6 5 4 8 8 H 1.08996 * 109.47448 * 54.78777 * 7 6 5 9 9 C 1.52998 * 109.46871 * 174.78746 * 7 6 5 10 10 N 1.46495 * 109.46895 * 294.78633 * 7 6 5 11 11 C 1.34779 * 120.00134 * 153.87826 * 10 7 6 12 12 O 1.21282 * 119.99720 * 359.97438 * 11 10 7 13 13 C 1.50699 * 120.00270 * 179.97438 * 11 10 7 14 14 C 1.52994 * 109.47037 * 179.97438 * 13 11 10 15 15 C 1.53005 * 109.47161 * 179.97438 * 14 13 11 16 16 C 1.52994 * 109.47161 * 180.02562 * 15 14 13 17 17 C 1.50699 * 109.47037 * 180.02562 * 16 15 14 18 18 H 1.08000 * 120.00175 * 0.02562 * 17 16 15 19 19 C 1.37881 * 120.00004 * 180.02562 * 17 16 15 20 20 N 1.31518 * 119.99986 * 359.97438 * 19 17 16 21 21 Si 1.86798 * 119.99933 * 180.02562 * 19 17 16 22 22 H 1.48504 * 109.47445 * 90.00059 * 21 19 17 23 23 H 1.48506 * 109.47425 * 209.99966 * 21 19 17 24 24 H 1.48502 * 109.47274 * 329.99871 * 21 19 17 25 25 C 1.38214 * 120.00114 * 0.02562 * 5 4 3 26 26 C 1.50697 * 120.00322 * 179.97438 * 25 5 4 27 27 C 1.38217 * 120.00256 * 180.08417 * 2 1 3 28 28 H 1.09006 * 109.47039 * 269.91633 * 1 2 3 29 29 H 1.09010 * 109.46993 * 29.91190 * 1 2 3 30 30 H 1.08994 * 109.47563 * 149.90941 * 1 2 3 31 31 H 1.07994 * 120.00069 * 0.06071 * 3 2 1 32 32 H 1.07993 * 120.00412 * 180.33976 * 4 3 2 33 33 H 1.09006 * 109.47331 * 220.43091 * 6 5 4 34 34 H 1.08991 * 109.47440 * 340.43112 * 6 5 4 35 35 H 1.09004 * 109.47672 * 59.99761 * 9 7 6 36 36 H 1.08998 * 109.47531 * 179.97438 * 9 7 6 37 37 H 1.09001 * 109.47229 * 299.99516 * 9 7 6 38 38 H 0.97001 * 119.99841 * 333.87042 * 10 7 6 39 39 H 1.08993 * 109.47083 * 299.99738 * 13 11 10 40 40 H 1.09000 * 109.46866 * 59.99656 * 13 11 10 41 41 H 1.09003 * 109.47234 * 300.00057 * 14 13 11 42 42 H 1.09000 * 109.47273 * 60.00272 * 14 13 11 43 43 H 1.08993 * 109.47134 * 300.00212 * 15 14 13 44 44 H 1.09000 * 109.46692 * 60.00054 * 15 14 13 45 45 H 1.09003 * 109.47234 * 300.00195 * 16 15 14 46 46 H 1.09000 * 109.47273 * 60.00410 * 16 15 14 47 47 H 0.96999 * 119.99709 * 179.97438 * 20 19 17 48 48 H 1.09004 * 109.47376 * 84.32449 * 26 25 5 49 49 H 1.09000 * 109.47378 * 204.32886 * 26 25 5 50 50 H 1.09004 * 109.47314 * 324.32709 * 26 25 5 51 51 H 1.08006 * 119.99447 * 359.97438 * 27 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1982 1.1973 0.0000 4 6 3.5804 1.1973 -0.0005 5 6 4.2717 0.0000 -0.0024 6 6 5.7787 0.0000 -0.0035 7 6 6.2897 -0.2628 1.4145 8 1 5.8525 -1.1867 1.7930 9 6 7.8141 -0.3921 1.3914 10 7 5.9072 0.8512 2.2856 11 6 5.7594 0.6509 3.6102 12 8 5.9427 -0.4518 4.0809 13 6 5.3665 1.7969 4.5064 14 6 5.2675 1.3036 5.9513 15 6 4.8692 2.4673 6.8613 16 6 4.7707 1.9742 8.3063 17 6 4.3778 3.1202 9.2025 18 1 4.2142 4.1020 8.7833 19 6 4.2272 2.9154 10.5577 20 7 4.4259 1.7197 11.0681 21 14 3.7394 4.3358 11.6685 22 1 2.2591 4.4024 11.7658 23 1 4.3155 4.1269 13.0212 24 1 4.2559 5.6075 11.1016 25 6 3.5806 -1.1970 -0.0042 26 6 4.3340 -2.5021 -0.0068 27 6 2.1981 -1.1970 -0.0018 28 1 -0.3633 -0.0015 1.0277 29 1 -0.3633 0.8909 -0.5125 30 1 -0.3634 -0.8891 -0.5152 31 1 1.6583 2.1326 0.0010 32 1 4.1205 2.1325 0.0050 33 1 6.1415 -0.7816 -0.6712 34 1 6.1418 0.9686 -0.3469 35 1 8.2515 0.5319 1.0130 36 1 8.1783 -0.5788 2.4016 37 1 8.0987 -1.2209 0.7433 38 1 5.7604 1.7330 1.9091 39 1 6.1184 2.5833 4.4414 40 1 4.4006 2.1907 4.1902 41 1 4.5153 0.5173 6.0161 42 1 6.2332 0.9096 6.2677 43 1 5.6215 3.2532 6.7965 44 1 3.9035 2.8618 6.5451 45 1 4.0185 1.1880 8.3715 46 1 5.7366 1.5800 8.6223 47 1 4.3203 1.5757 12.0215 48 1 4.6041 -2.7678 1.0153 49 1 3.7046 -3.2842 -0.4313 50 1 5.2385 -2.3983 -0.6063 51 1 1.6580 -2.1323 -0.0027 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000588157505.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:20:00 Heat of formation + Delta-G solvation = -82.902810 kcal Electronic energy + Delta-G solvation = -26051.864564 eV Core-core repulsion = 22527.183002 eV Total energy + Delta-G solvation = -3524.681561 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 317.210 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -41.15507 -40.32873 -37.40723 -36.52829 -34.66410 -34.58918 -33.06122 -32.42806 -31.06314 -29.28611 -28.03494 -27.45871 -25.76303 -24.41937 -23.02179 -22.35968 -21.68822 -21.24953 -20.85613 -18.42696 -17.93569 -17.36545 -16.91795 -16.73369 -16.51696 -16.33027 -15.70681 -15.53250 -15.06301 -14.86179 -14.61661 -14.47910 -14.24185 -14.02246 -13.93462 -13.67325 -13.60317 -13.53044 -13.34930 -13.13418 -12.95766 -12.82185 -12.77670 -12.72080 -12.44632 -12.33577 -12.16141 -12.13099 -11.84578 -11.73812 -11.61490 -11.38905 -11.35648 -11.15036 -10.69880 -10.55544 -10.04285 -9.61373 -9.25684 -8.19054 -6.31465 0.45074 0.52517 1.39859 1.42402 1.53509 1.72499 2.28031 2.41997 2.81897 3.13526 3.74856 3.86691 3.88692 3.98636 4.05297 4.08872 4.11799 4.14637 4.27301 4.40139 4.43430 4.50293 4.62637 4.66918 4.68541 4.71712 4.75398 4.79842 4.82186 4.84229 4.86714 4.88207 4.95583 4.97271 5.05938 5.11878 5.18686 5.27886 5.32672 5.34855 5.37024 5.40122 5.54901 5.57641 5.62215 5.74239 5.77238 5.80594 5.87349 6.19415 6.24817 6.63766 6.86942 7.36368 7.38195 8.93357 Molecular weight = 317.21amu Principal moments of inertia in cm(-1) A = 0.013795 B = 0.002396 C = 0.002178 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2029.275027 B =11682.072877 C =12855.479170 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.102 4.102 3 C -0.138 4.138 4 C -0.112 4.112 5 C -0.097 4.097 6 C -0.078 4.078 7 C 0.144 3.856 8 H 0.061 0.939 9 C -0.159 4.159 10 N -0.710 5.710 11 C 0.512 3.488 12 O -0.589 6.589 13 C -0.129 4.129 14 C -0.094 4.094 15 C -0.095 4.095 16 C 0.019 3.981 17 C -0.542 4.542 18 H 0.066 0.934 19 C -0.007 4.007 20 N -0.938 5.938 21 Si 0.970 3.030 22 H -0.271 1.271 23 H -0.283 1.283 24 H -0.259 1.259 25 C -0.094 4.094 26 C -0.117 4.117 27 C -0.139 4.139 28 H 0.067 0.933 29 H 0.076 0.924 30 H 0.071 0.929 31 H 0.134 0.866 32 H 0.143 0.857 33 H 0.104 0.896 34 H 0.100 0.900 35 H 0.075 0.925 36 H 0.032 0.968 37 H 0.081 0.919 38 H 0.413 0.587 39 H 0.118 0.882 40 H 0.112 0.888 41 H 0.038 0.962 42 H 0.042 0.958 43 H 0.061 0.939 44 H 0.059 0.941 45 H -0.017 1.017 46 H -0.016 1.016 47 H 0.263 0.737 48 H 0.058 0.942 49 H 0.071 0.929 50 H 0.085 0.915 51 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.340 -1.322 -32.773 32.801 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.102 4.102 3 C -0.156 4.156 4 C -0.130 4.130 5 C -0.097 4.097 6 C -0.115 4.115 7 C 0.040 3.960 8 H 0.080 0.920 9 C -0.217 4.217 10 N -0.362 5.362 11 C 0.300 3.700 12 O -0.470 6.470 13 C -0.169 4.169 14 C -0.133 4.133 15 C -0.132 4.132 16 C -0.018 4.018 17 C -0.580 4.580 18 H 0.084 0.916 19 C -0.204 4.204 20 N -0.579 5.579 21 Si 0.794 3.206 22 H -0.197 1.197 23 H -0.209 1.209 24 H -0.182 1.182 25 C -0.094 4.094 26 C -0.173 4.173 27 C -0.157 4.157 28 H 0.086 0.914 29 H 0.095 0.905 30 H 0.090 0.910 31 H 0.151 0.849 32 H 0.161 0.839 33 H 0.122 0.878 34 H 0.118 0.882 35 H 0.094 0.906 36 H 0.052 0.948 37 H 0.100 0.900 38 H 0.250 0.750 39 H 0.136 0.864 40 H 0.130 0.870 41 H 0.057 0.943 42 H 0.061 0.939 43 H 0.080 0.920 44 H 0.078 0.922 45 H 0.001 0.999 46 H 0.003 0.997 47 H 0.072 0.928 48 H 0.077 0.923 49 H 0.090 0.910 50 H 0.103 0.897 51 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -0.206 -2.203 -32.319 32.395 hybrid contribution -0.450 0.329 1.118 1.249 sum -0.655 -1.874 -31.201 31.264 Atomic orbital electron populations 1.20816 0.90253 1.03483 1.02496 1.20214 0.97115 0.93409 0.99468 1.21282 0.94824 0.97918 1.01543 1.21291 0.94197 0.98079 0.99436 1.19839 0.96067 0.92680 1.01141 1.20909 0.90313 1.05395 0.94920 1.20942 0.95120 0.90123 0.89833 0.92037 1.22149 0.94463 1.03581 1.01539 1.45949 1.70177 1.13828 1.06289 1.21093 0.75517 0.89956 0.83481 1.90682 1.52492 1.27874 1.75902 1.21660 1.05241 0.96827 0.93144 1.21225 1.00499 0.97680 0.93863 1.21443 1.00722 0.96941 0.94132 1.19048 0.94315 0.95309 0.93102 1.21756 1.46360 0.96679 0.93194 0.91554 1.26109 0.95372 0.98675 1.00273 1.70139 1.50871 1.23784 1.13098 0.85373 0.78571 0.79161 0.77485 1.19694 1.20876 1.18247 1.20027 0.93906 0.95923 0.99520 1.20879 1.00686 0.93686 1.02059 1.21130 0.93971 0.98107 1.02521 0.91417 0.90502 0.91024 0.84850 0.83889 0.87816 0.88155 0.90565 0.94843 0.89966 0.74982 0.86358 0.86966 0.94277 0.93878 0.91991 0.92238 0.99894 0.99713 0.92834 0.92320 0.91012 0.89674 0.85879 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.59 10.01 71.23 0.71 -0.88 16 2 C -0.10 -1.85 5.88 -19.87 -0.12 -1.97 16 3 C -0.14 -2.28 9.70 22.27 0.22 -2.06 16 4 C -0.11 -1.66 9.67 22.27 0.22 -1.44 16 5 C -0.10 -1.54 4.87 -19.87 -0.10 -1.63 16 6 C -0.08 -0.87 4.36 29.85 0.13 -0.74 16 7 C 0.14 2.48 2.51 44.99 0.11 2.59 16 8 H 0.06 1.46 6.23 -2.39 -0.01 1.45 16 9 C -0.16 -2.46 9.50 71.98 0.68 -1.78 16 10 N -0.71 -13.21 4.79 -442.54 -2.12 -15.33 16 11 C 0.51 14.36 7.81 87.66 0.68 15.04 16 12 O -0.59 -22.68 15.63 -3.04 -0.05 -22.72 16 13 C -0.13 -3.36 5.70 29.85 0.17 -3.19 16 14 C -0.09 -3.57 4.50 30.59 0.14 -3.43 16 15 C -0.09 -4.00 5.15 30.59 0.16 -3.84 16 16 C 0.02 1.09 4.97 29.85 0.15 1.24 16 17 C -0.54 -31.94 9.11 25.60 0.23 -31.70 16 18 H 0.07 3.66 7.74 -2.91 -0.02 3.64 16 19 C -0.01 -0.43 5.46 84.66 0.46 0.03 16 20 N -0.94 -59.85 13.29 21.45 0.28 -59.57 16 21 Si 0.97 45.27 29.54 68.60 2.03 47.29 16 22 H -0.27 -12.19 7.11 99.48 0.71 -11.49 16 23 H -0.28 -12.95 7.11 99.48 0.71 -12.25 16 24 H -0.26 -11.32 7.11 99.48 0.71 -10.62 16 25 C -0.09 -1.71 5.87 -19.87 -0.12 -1.83 16 26 C -0.12 -1.76 8.93 71.23 0.64 -1.12 16 27 C -0.14 -2.66 9.33 22.27 0.21 -2.46 16 28 H 0.07 0.99 8.14 -2.38 -0.02 0.97 16 29 H 0.08 0.87 8.09 -2.38 -0.02 0.85 16 30 H 0.07 0.87 8.09 -2.39 -0.02 0.85 16 31 H 0.13 1.73 8.06 -2.91 -0.02 1.71 16 32 H 0.14 1.32 8.03 -2.91 -0.02 1.30 16 33 H 0.10 0.88 6.49 -2.38 -0.02 0.87 16 34 H 0.10 0.68 8.00 -2.39 -0.02 0.66 16 35 H 0.08 0.89 8.14 -2.38 -0.02 0.87 16 36 H 0.03 0.73 8.14 -2.39 -0.02 0.71 16 37 H 0.08 0.96 8.14 -2.39 -0.02 0.94 16 38 H 0.41 4.90 8.61 -92.71 -0.80 4.10 16 39 H 0.12 2.43 8.14 -2.39 -0.02 2.41 16 40 H 0.11 2.44 8.14 -2.39 -0.02 2.42 16 41 H 0.04 1.63 8.10 -2.39 -0.02 1.61 16 42 H 0.04 1.77 8.10 -2.39 -0.02 1.75 16 43 H 0.06 2.42 8.14 -2.39 -0.02 2.40 16 44 H 0.06 2.35 8.14 -2.39 -0.02 2.33 16 45 H -0.02 -1.07 8.14 -2.39 -0.02 -1.09 16 46 H -0.02 -0.96 8.14 -2.39 -0.02 -0.97 16 47 H 0.26 15.68 8.31 -92.71 -0.77 14.91 16 48 H 0.06 1.07 7.44 -2.38 -0.02 1.05 16 49 H 0.07 0.94 8.05 -2.39 -0.02 0.92 16 50 H 0.08 0.95 6.36 -2.38 -0.02 0.94 16 51 H 0.12 2.08 8.06 -2.91 -0.02 2.06 16 Total: -1.00 -79.03 413.06 4.81 -74.22 By element: Atomic # 1 Polarization: 15.20 SS G_CDS: 0.09 Total: 15.28 kcal Atomic # 6 Polarization: -43.76 SS G_CDS: 4.58 Total: -39.18 kcal Atomic # 7 Polarization: -73.06 SS G_CDS: -1.83 Total: -74.89 kcal Atomic # 8 Polarization: -22.68 SS G_CDS: -0.05 Total: -22.72 kcal Atomic # 14 Polarization: 45.27 SS G_CDS: 2.03 Total: 47.29 kcal Total: -79.03 4.81 -74.22 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000588157505.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.682 kcal (2) G-P(sol) polarization free energy of solvation -79.032 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.713 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.810 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.221 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.903 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds