Wall clock time and date at job start Tue Mar 31 2020 12:14:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52992 * 109.47482 * 2 1 4 4 C 1.53006 * 109.47127 * 120.00347 * 2 1 3 5 5 N 1.46500 * 109.46998 * 299.99786 * 4 2 1 6 6 C 1.34769 * 120.00237 * 180.02562 * 5 4 2 7 7 O 1.21282 * 119.99855 * 359.97438 * 6 5 4 8 8 C 1.50702 * 120.00461 * 180.02562 * 6 5 4 9 9 C 1.52996 * 109.47218 * 179.97438 * 8 6 5 10 10 C 1.53002 * 109.46969 * 180.02562 * 9 8 6 11 11 C 1.52996 * 109.47340 * 180.02562 * 10 9 8 12 12 C 1.50699 * 109.47232 * 179.97438 * 11 10 9 13 13 H 1.07997 * 120.00371 * 0.02562 * 12 11 10 14 14 C 1.37882 * 119.99795 * 179.97438 * 12 11 10 15 15 N 1.31513 * 119.99830 * 179.97438 * 14 12 11 16 16 Si 1.86799 * 120.00071 * 0.02562 * 14 12 11 17 17 H 1.48508 * 109.47012 * 89.99724 * 16 14 12 18 18 H 1.48499 * 109.47078 * 209.99436 * 16 14 12 19 19 H 1.48496 * 109.47022 * 329.99978 * 16 14 12 20 20 C 1.52999 * 109.47317 * 239.99858 * 2 1 3 21 21 C 1.50706 * 109.46953 * 60.00071 * 20 2 1 22 22 C 1.38231 * 119.99890 * 269.72761 * 21 20 2 23 23 C 1.38243 * 119.99932 * 179.76127 * 22 21 20 24 24 C 1.38235 * 119.99614 * 0.51210 * 23 22 21 25 25 C 1.38238 * 120.00119 * 359.74635 * 24 23 22 26 26 C 1.38234 * 120.00044 * 359.97438 * 25 24 23 27 27 H 1.09002 * 109.47153 * 59.99783 * 1 2 3 28 28 H 1.09001 * 109.46832 * 299.99974 * 1 2 3 29 29 H 1.09004 * 109.47261 * 179.97438 * 1 2 3 30 30 H 1.09001 * 109.47066 * 60.00169 * 3 2 1 31 31 H 1.08996 * 109.47747 * 179.97438 * 3 2 1 32 32 H 1.09002 * 109.47103 * 300.00247 * 3 2 1 33 33 H 1.08993 * 109.46955 * 60.00011 * 4 2 1 34 34 H 1.09000 * 109.47050 * 179.97438 * 4 2 1 35 35 H 0.97003 * 119.99531 * 359.97438 * 5 4 2 36 36 H 1.08996 * 109.47077 * 300.00146 * 8 6 5 37 37 H 1.09004 * 109.46818 * 59.99313 * 8 6 5 38 38 H 1.09000 * 109.47380 * 299.99442 * 9 8 6 39 39 H 1.08996 * 109.47134 * 60.00532 * 9 8 6 40 40 H 1.09004 * 109.46930 * 300.00004 * 10 9 8 41 41 H 1.09000 * 109.47312 * 60.00061 * 10 9 8 42 42 H 1.09004 * 109.46785 * 299.99692 * 11 10 9 43 43 H 1.08992 * 109.47346 * 59.99314 * 11 10 9 44 44 H 0.97002 * 120.00008 * 179.97438 * 15 14 12 45 45 H 1.09000 * 109.47486 * 180.02562 * 20 2 1 46 46 H 1.09001 * 109.47362 * 300.00732 * 20 2 1 47 47 H 1.08006 * 120.00368 * 0.02562 * 22 21 20 48 48 H 1.07997 * 120.00078 * 180.23244 * 23 22 21 49 49 H 1.08001 * 120.00016 * 179.71719 * 24 23 22 50 50 H 1.08003 * 119.99866 * 179.97438 * 25 24 23 51 51 H 1.07997 * 119.99975 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0400 -0.7214 1.2492 5 7 1.5517 -0.0308 2.4454 6 6 1.8777 -0.4909 3.6695 7 8 2.5749 -1.4770 3.7807 8 6 1.3749 0.2191 4.9000 9 6 1.8850 -0.5021 6.1492 10 6 1.3740 0.2184 7.3985 11 6 1.8846 -0.5024 8.6477 12 6 1.3818 0.2077 9.8781 13 1 0.7599 1.0850 9.7791 14 6 1.7149 -0.2635 11.1304 15 7 1.2765 0.3565 12.2042 16 14 2.7899 -1.7814 11.3018 17 1 4.2174 -1.3744 11.3476 18 1 2.4390 -2.4977 12.5543 19 1 2.5682 -2.6787 10.1395 20 6 2.0400 -0.7213 -1.2492 21 6 1.5377 -0.0108 -2.4797 22 6 0.3326 -0.3800 -3.0473 23 6 -0.1306 0.2750 -4.1732 24 6 0.6165 1.2920 -4.7375 25 6 1.8242 1.6575 -4.1729 26 6 2.2846 1.0064 -3.0438 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3633 0.5138 0.8900 29 1 -0.3634 -1.0277 -0.0005 30 1 1.6768 1.9562 0.8900 31 1 3.1300 1.4424 0.0005 32 1 1.6767 1.9563 -0.8900 33 1 1.6767 -1.7489 1.2492 34 1 3.1300 -0.7217 1.2490 35 1 0.9943 0.7581 2.3564 36 1 1.7374 1.2470 4.9000 37 1 0.2849 0.2184 4.9000 38 1 1.5220 -1.5299 6.1491 39 1 2.9749 -0.5016 6.1494 40 1 1.7366 1.2464 7.3989 41 1 0.2840 0.2176 7.3981 42 1 1.5223 -1.5305 8.6475 43 1 2.9745 -0.5013 8.6478 44 1 1.5105 0.0248 13.0853 45 1 3.1300 -0.7217 -1.2490 46 1 1.6766 -1.7489 -1.2493 47 1 -0.2493 -1.1773 -2.6088 48 1 -1.0740 -0.0109 -4.6145 49 1 0.2569 1.8006 -5.6197 50 1 2.4081 2.4518 -4.6141 51 1 3.2283 1.2918 -2.6030 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000588158116.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:14:55 Heat of formation + Delta-G solvation = -73.235829 kcal Electronic energy + Delta-G solvation = -25426.736351 eV Core-core repulsion = 21902.473982 eV Total energy + Delta-G solvation = -3524.262369 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 317.210 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.13120 -40.35387 -38.31630 -36.64847 -34.86645 -34.58465 -32.24797 -31.78844 -31.62350 -28.39604 -28.17129 -27.77225 -26.38674 -23.71514 -23.30938 -22.27253 -21.71331 -21.27586 -19.89538 -18.84985 -17.91998 -17.52121 -16.97433 -16.92716 -16.31300 -16.20335 -15.89050 -15.82075 -15.50879 -15.05109 -14.93296 -14.63582 -14.30491 -14.26791 -13.97350 -13.75413 -13.64486 -13.49558 -13.40919 -13.26001 -12.85990 -12.72797 -12.60551 -12.32646 -12.23348 -12.06258 -11.79760 -11.79435 -11.75224 -11.64966 -11.51412 -11.46766 -11.33950 -11.25867 -10.77961 -10.75705 -10.04701 -9.73089 -9.50648 -8.29534 -6.32564 0.50504 0.56050 1.34868 1.36352 1.49334 1.69546 2.26057 2.36137 2.93594 3.05921 3.59555 3.78694 3.86890 3.94383 4.05147 4.09153 4.15311 4.16879 4.22581 4.36412 4.41904 4.48341 4.61459 4.65723 4.69962 4.72312 4.75394 4.79341 4.85706 4.86841 4.90204 4.90783 5.04071 5.08708 5.13729 5.15996 5.21298 5.23084 5.27222 5.29551 5.39716 5.42119 5.50356 5.61598 5.64431 5.66441 5.69141 5.69763 5.79514 6.18757 6.29810 6.58164 6.75361 7.30720 7.32354 8.87031 Molecular weight = 317.21amu Principal moments of inertia in cm(-1) A = 0.041559 B = 0.001664 C = 0.001648 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 673.573250 B =16822.505348 C =16989.164308 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.056 4.056 3 C -0.144 4.144 4 C 0.130 3.870 5 N -0.716 5.716 6 C 0.511 3.489 7 O -0.588 6.588 8 C -0.132 4.132 9 C -0.097 4.097 10 C -0.094 4.094 11 C -0.017 4.017 12 C -0.532 4.532 13 H 0.037 0.963 14 C 0.005 3.995 15 N -0.950 5.950 16 Si 0.947 3.053 17 H -0.267 1.267 18 H -0.281 1.281 19 H -0.253 1.253 20 C -0.070 4.070 21 C -0.078 4.078 22 C -0.124 4.124 23 C -0.130 4.130 24 C -0.136 4.136 25 C -0.130 4.130 26 C -0.124 4.124 27 H 0.065 0.935 28 H 0.059 0.941 29 H 0.056 0.944 30 H 0.059 0.941 31 H 0.056 0.944 32 H 0.065 0.935 33 H 0.057 0.943 34 H 0.057 0.943 35 H 0.413 0.587 36 H 0.115 0.885 37 H 0.115 0.885 38 H 0.050 0.950 39 H 0.051 0.949 40 H 0.057 0.943 41 H 0.057 0.943 42 H 0.013 0.987 43 H 0.012 0.988 44 H 0.266 0.734 45 H 0.078 0.922 46 H 0.078 0.922 47 H 0.128 0.872 48 H 0.133 0.867 49 H 0.133 0.867 50 H 0.133 0.867 51 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.498 2.126 -39.757 39.842 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.057 4.057 3 C -0.202 4.202 4 C 0.006 3.994 5 N -0.369 5.369 6 C 0.299 3.701 7 O -0.468 6.468 8 C -0.172 4.172 9 C -0.135 4.135 10 C -0.132 4.132 11 C -0.055 4.055 12 C -0.570 4.570 13 H 0.055 0.945 14 C -0.192 4.192 15 N -0.591 5.591 16 Si 0.771 3.229 17 H -0.192 1.192 18 H -0.207 1.207 19 H -0.176 1.176 20 C -0.107 4.107 21 C -0.078 4.078 22 C -0.142 4.142 23 C -0.148 4.148 24 C -0.154 4.154 25 C -0.148 4.148 26 C -0.142 4.142 27 H 0.084 0.916 28 H 0.078 0.922 29 H 0.075 0.925 30 H 0.078 0.922 31 H 0.075 0.925 32 H 0.084 0.916 33 H 0.075 0.925 34 H 0.075 0.925 35 H 0.252 0.748 36 H 0.133 0.867 37 H 0.133 0.867 38 H 0.069 0.931 39 H 0.070 0.930 40 H 0.076 0.924 41 H 0.075 0.925 42 H 0.032 0.968 43 H 0.031 0.969 44 H 0.075 0.925 45 H 0.096 0.904 46 H 0.096 0.904 47 H 0.146 0.854 48 H 0.151 0.849 49 H 0.151 0.849 50 H 0.151 0.849 51 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -1.008 1.430 -39.516 39.555 hybrid contribution 0.153 -0.188 0.666 0.709 sum -0.855 1.242 -38.850 38.879 Atomic orbital electron populations 1.21964 0.93470 1.02282 1.02443 1.20598 0.96621 0.96041 0.92401 1.21964 1.01208 0.94546 1.02450 1.21369 0.98631 0.95819 0.83569 1.45967 1.53725 1.32439 1.04807 1.21124 0.79242 0.83928 0.85789 1.90687 1.39992 1.28563 1.87582 1.21683 1.03829 1.01212 0.90474 1.21272 1.00353 0.98940 0.92961 1.21347 1.00118 0.98915 0.92810 1.19578 0.95943 0.96038 0.93909 1.21556 1.31338 1.12684 0.91378 0.94469 1.25985 0.97348 1.00359 0.95514 1.70060 1.47813 1.42663 0.98568 0.85698 0.79275 0.79838 0.78098 1.19226 1.20671 1.17649 1.20607 1.01177 0.98690 0.90275 1.19821 0.95004 0.96615 0.96388 1.21254 0.96072 1.00509 0.96382 1.21403 1.00505 0.96524 0.96355 1.21415 0.95296 0.97950 1.00690 1.21403 0.96752 1.00325 0.96311 1.21251 1.00327 0.96275 0.96356 0.91637 0.92159 0.92468 0.92165 0.92462 0.91620 0.92478 0.92470 0.74846 0.86679 0.86706 0.93091 0.93009 0.92438 0.92458 0.96816 0.96913 0.92519 0.90377 0.90383 0.85431 0.84911 0.84901 0.84910 0.85427 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.46 7.72 71.98 0.56 -0.90 16 2 C -0.06 -0.60 0.55 -52.18 -0.03 -0.63 16 3 C -0.14 -1.46 7.71 71.98 0.55 -0.90 16 4 C 0.13 2.08 4.56 86.38 0.39 2.48 16 5 N -0.72 -12.09 4.96 -463.06 -2.30 -14.39 16 6 C 0.51 12.80 7.83 87.66 0.69 13.49 16 7 O -0.59 -20.47 15.98 -3.04 -0.05 -20.52 16 8 C -0.13 -3.04 5.70 29.85 0.17 -2.87 16 9 C -0.10 -3.18 4.50 30.59 0.14 -3.04 16 10 C -0.09 -3.65 5.15 30.59 0.16 -3.49 16 11 C -0.02 -0.85 4.04 29.85 0.12 -0.73 16 12 C -0.53 -31.56 9.66 25.60 0.25 -31.31 16 13 H 0.04 2.38 7.99 -2.91 -0.02 2.36 16 14 C 0.00 0.28 5.47 84.66 0.46 0.74 16 15 N -0.95 -60.75 13.96 21.45 0.30 -60.45 16 16 Si 0.95 46.23 27.47 68.60 1.88 48.12 16 17 H -0.27 -12.54 7.11 99.48 0.71 -11.83 16 18 H -0.28 -13.30 7.11 99.48 0.71 -12.59 16 19 H -0.25 -11.76 6.54 99.48 0.65 -11.11 16 20 C -0.07 -0.73 4.46 29.85 0.13 -0.59 16 21 C -0.08 -0.88 4.00 -19.86 -0.08 -0.96 16 22 C -0.12 -1.38 7.90 22.27 0.18 -1.20 16 23 C -0.13 -1.38 10.05 22.27 0.22 -1.15 16 24 C -0.14 -1.41 10.05 22.27 0.22 -1.18 16 25 C -0.13 -1.38 10.05 22.27 0.22 -1.15 16 26 C -0.12 -1.38 7.88 22.27 0.18 -1.20 16 27 H 0.06 0.68 6.19 -2.39 -0.01 0.66 16 28 H 0.06 0.56 6.86 -2.39 -0.02 0.55 16 29 H 0.06 0.60 8.14 -2.38 -0.02 0.58 16 30 H 0.06 0.56 6.86 -2.39 -0.02 0.54 16 31 H 0.06 0.60 8.14 -2.39 -0.02 0.58 16 32 H 0.06 0.68 6.17 -2.39 -0.01 0.66 16 33 H 0.06 1.06 8.14 -2.39 -0.02 1.04 16 34 H 0.06 1.06 8.14 -2.39 -0.02 1.04 16 35 H 0.41 4.66 6.16 -92.71 -0.57 4.09 16 36 H 0.12 2.13 8.14 -2.39 -0.02 2.11 16 37 H 0.11 2.13 8.14 -2.39 -0.02 2.11 16 38 H 0.05 1.79 8.10 -2.39 -0.02 1.77 16 39 H 0.05 1.81 8.10 -2.39 -0.02 1.79 16 40 H 0.06 2.16 8.14 -2.38 -0.02 2.14 16 41 H 0.06 2.15 8.14 -2.39 -0.02 2.13 16 42 H 0.01 0.67 7.20 -2.38 -0.02 0.65 16 43 H 0.01 0.61 7.57 -2.39 -0.02 0.59 16 44 H 0.27 15.84 8.31 -92.71 -0.77 15.07 16 45 H 0.08 0.79 8.09 -2.39 -0.02 0.77 16 46 H 0.08 0.79 8.08 -2.39 -0.02 0.77 16 47 H 0.13 1.16 8.04 -2.91 -0.02 1.14 16 48 H 0.13 0.96 8.06 -2.91 -0.02 0.94 16 49 H 0.13 0.90 8.06 -2.91 -0.02 0.88 16 50 H 0.13 0.96 8.06 -2.91 -0.02 0.94 16 51 H 0.13 1.16 8.03 -2.91 -0.02 1.14 16 Total: -1.00 -74.98 401.47 4.63 -70.35 By element: Atomic # 1 Polarization: 11.26 SS G_CDS: 0.25 Total: 11.51 kcal Atomic # 6 Polarization: -39.16 SS G_CDS: 4.53 Total: -34.62 kcal Atomic # 7 Polarization: -72.84 SS G_CDS: -2.00 Total: -74.84 kcal Atomic # 8 Polarization: -20.47 SS G_CDS: -0.05 Total: -20.52 kcal Atomic # 14 Polarization: 46.23 SS G_CDS: 1.88 Total: 48.12 kcal Total: -74.98 4.63 -70.35 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000588158116.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.887 kcal (2) G-P(sol) polarization free energy of solvation -74.975 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.862 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.626 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.349 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.236 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds