Wall clock time and date at job start Tue Mar 31 2020 11:23:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.38235 * 119.99712 * 2 1 4 4 C 1.38237 * 119.99903 * 180.02562 * 3 2 1 5 5 C 1.50705 * 119.99763 * 179.97438 * 4 3 2 6 6 C 1.38236 * 119.99878 * 0.02562 * 4 3 2 7 7 C 1.38233 * 120.00313 * 359.95285 * 6 4 3 8 8 C 1.50689 * 120.00269 * 180.02562 * 7 6 4 9 9 C 1.53010 * 109.46884 * 89.99938 * 8 7 6 10 10 H 1.08997 * 109.46815 * 55.00882 * 9 8 7 11 11 C 1.53003 * 109.46752 * 174.99904 * 9 8 7 12 12 N 1.46496 * 109.47076 * 294.99962 * 9 8 7 13 13 C 1.34774 * 119.99544 * 155.00017 * 12 9 8 14 14 O 1.21279 * 120.00472 * 0.02562 * 13 12 9 15 15 C 1.50706 * 120.00020 * 180.02562 * 13 12 9 16 16 C 1.52997 * 109.47238 * 180.02562 * 15 13 12 17 17 C 1.52996 * 109.46947 * 179.97438 * 16 15 13 18 18 C 1.53002 * 109.46891 * 179.97438 * 17 16 15 19 19 C 1.50706 * 109.46994 * 179.97438 * 18 17 16 20 20 H 1.07995 * 119.99838 * 0.02562 * 19 18 17 21 21 C 1.37878 * 119.99810 * 180.02562 * 19 18 17 22 22 N 1.31515 * 120.00437 * 359.97438 * 21 19 18 23 23 Si 1.86800 * 119.99747 * 180.02562 * 21 19 18 24 24 H 1.48500 * 109.47264 * 359.97438 * 23 21 19 25 25 H 1.48501 * 109.47361 * 119.99803 * 23 21 19 26 26 H 1.48508 * 109.46860 * 239.99505 * 23 21 19 27 27 C 1.38234 * 120.00260 * 180.22100 * 2 1 3 28 28 H 1.09006 * 109.47106 * 90.00066 * 1 2 3 29 29 H 1.09002 * 109.46967 * 209.99399 * 1 2 3 30 30 H 1.09000 * 109.47133 * 329.99214 * 1 2 3 31 31 H 1.07997 * 120.00053 * 0.02562 * 3 2 1 32 32 H 1.08997 * 109.46788 * 270.02242 * 5 4 3 33 33 H 1.09000 * 109.47389 * 30.02274 * 5 4 3 34 34 H 1.08995 * 109.46799 * 150.02554 * 5 4 3 35 35 H 1.08000 * 119.99675 * 179.97438 * 6 4 3 36 36 H 1.09004 * 109.47405 * 330.00878 * 8 7 6 37 37 H 1.08999 * 109.47722 * 210.00333 * 8 7 6 38 38 H 1.08997 * 109.46755 * 180.02562 * 11 9 8 39 39 H 1.08992 * 109.47534 * 300.00312 * 11 9 8 40 40 H 1.09005 * 109.46941 * 60.00853 * 11 9 8 41 41 H 0.96994 * 120.00700 * 335.00136 * 12 9 8 42 42 H 1.09001 * 109.46953 * 299.99667 * 15 13 12 43 43 H 1.09000 * 109.47318 * 59.99264 * 15 13 12 44 44 H 1.09001 * 109.46832 * 299.99686 * 16 15 13 45 45 H 1.09004 * 109.47261 * 59.99705 * 16 15 13 46 46 H 1.08992 * 109.47554 * 299.99696 * 17 16 15 47 47 H 1.08996 * 109.47261 * 60.00229 * 17 16 15 48 48 H 1.08998 * 109.47844 * 299.99997 * 18 17 16 49 49 H 1.09001 * 109.47248 * 60.00689 * 18 17 16 50 50 H 0.96999 * 120.00397 * 180.02562 * 22 21 19 51 51 H 1.07995 * 120.00098 * 0.02562 * 27 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1981 1.1972 0.0000 4 6 3.5805 1.1972 -0.0005 5 6 4.3339 2.5024 -0.0011 6 6 4.2717 0.0001 -0.0016 7 6 3.5806 -1.1971 -0.0012 8 6 4.3341 -2.5021 -0.0017 9 6 4.5901 -2.9438 1.4407 10 1 3.6441 -2.9884 1.9803 11 6 5.2437 -4.3272 1.4420 12 7 5.4809 -1.9822 2.0950 13 6 5.4597 -1.8486 3.4359 14 8 4.7036 -2.5246 4.1009 15 6 6.3756 -0.8590 4.1091 16 6 6.1537 -0.9062 5.6222 17 6 7.0840 0.0979 6.3056 18 6 6.8616 0.0511 7.8186 19 6 7.7784 1.0398 8.4919 20 1 8.4519 1.6416 7.8998 21 6 7.7573 1.1760 9.8638 22 7 6.9368 0.4435 10.5848 23 14 8.8931 2.4020 10.6982 24 1 9.7108 3.0972 9.6719 25 1 8.0836 3.3981 11.4448 26 1 9.7884 1.6847 11.6413 27 6 2.1982 -1.1971 -0.0046 28 1 -0.3634 0.0000 -1.0277 29 1 -0.3633 -0.8901 0.5137 30 1 -0.3633 0.8899 0.5140 31 1 1.6581 2.1324 0.0004 32 1 4.5148 2.8170 -1.0289 33 1 3.7452 3.2621 0.5131 34 1 5.2867 2.3721 0.5120 35 1 5.3517 0.0002 -0.0024 36 1 5.2862 -2.3717 -0.5161 37 1 3.7448 -3.2618 -0.5152 38 1 5.4256 -4.6420 2.4695 39 1 4.5810 -5.0426 0.9551 40 1 6.1897 -4.2826 0.9023 41 1 6.0858 -1.4418 1.5633 42 1 7.4118 -1.1132 3.8862 43 1 6.1603 0.1441 3.7410 44 1 5.1174 -0.6524 5.8455 45 1 6.3694 -1.9095 5.9899 46 1 8.1200 -0.1563 6.0823 47 1 6.8687 1.1012 5.9380 48 1 5.8255 0.3056 8.0418 49 1 7.0767 -0.9521 8.1867 50 1 6.9217 0.5396 11.5499 51 1 1.6583 -2.1324 -0.0086 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000588159292.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:23:30 Heat of formation + Delta-G solvation = -66.141871 kcal Electronic energy + Delta-G solvation = -25918.540914 eV Core-core repulsion = 22394.586162 eV Total energy + Delta-G solvation = -3523.954752 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 317.210 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -40.24940 -39.42193 -36.48757 -34.79049 -33.76492 -33.10749 -32.57919 -31.13102 -29.37970 -27.91747 -26.94476 -26.72922 -25.61993 -22.89955 -21.65387 -21.06529 -20.55110 -20.14406 -19.89629 -16.81997 -16.57392 -16.42715 -16.12250 -15.74688 -15.50949 -14.97214 -14.45012 -14.35017 -14.09289 -13.75318 -13.67646 -13.47750 -13.35926 -13.22304 -12.79599 -12.74623 -12.66184 -12.52797 -12.28642 -12.09272 -11.99073 -11.68236 -11.63312 -11.52923 -11.24642 -11.17309 -11.02553 -10.96660 -10.48912 -10.45883 -10.36773 -9.70675 -9.57428 -9.17769 -9.12523 -8.93610 -8.79124 -8.75116 -8.28246 -5.92806 -3.95138 1.12909 1.14786 2.83621 3.19883 3.34630 3.41694 3.45725 3.45834 4.35260 4.47169 4.51011 4.54009 4.63626 4.87237 4.90032 5.00763 5.01488 5.09648 5.13948 5.21319 5.29435 5.33928 5.35777 5.38010 5.38634 5.42118 5.43589 5.45727 5.51479 5.58190 5.63704 5.80251 5.91323 5.94661 5.97968 6.03251 6.19446 6.28960 6.32257 6.36267 6.40824 6.49155 6.60716 6.80926 6.89207 7.07286 7.24274 7.53802 7.77529 7.93830 8.09134 8.37828 8.50971 9.12900 9.68378 11.18605 Molecular weight = 317.21amu Principal moments of inertia in cm(-1) A = 0.013515 B = 0.002380 C = 0.002193 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2071.307192 B =11759.537902 C =12762.630070 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.080 4.080 3 C -0.125 4.125 4 C -0.078 4.078 5 C -0.116 4.116 6 C -0.119 4.119 7 C -0.072 4.072 8 C -0.088 4.088 9 C 0.147 3.853 10 H 0.088 0.912 11 C -0.164 4.164 12 N -0.731 5.731 13 C 0.514 3.486 14 O -0.536 6.536 15 C -0.139 4.139 16 C -0.102 4.102 17 C -0.110 4.110 18 C 0.019 3.981 19 C -0.518 4.518 20 H 0.054 0.946 21 C 0.054 3.946 22 N -0.895 5.895 23 Si 0.890 3.110 24 H -0.273 1.273 25 H -0.284 1.284 26 H -0.284 1.284 27 C -0.123 4.123 28 H 0.069 0.931 29 H 0.066 0.934 30 H 0.066 0.934 31 H 0.119 0.881 32 H 0.069 0.931 33 H 0.067 0.933 34 H 0.068 0.932 35 H 0.118 0.882 36 H 0.077 0.923 37 H 0.087 0.913 38 H 0.064 0.936 39 H 0.063 0.937 40 H 0.056 0.944 41 H 0.396 0.604 42 H 0.089 0.911 43 H 0.088 0.912 44 H 0.062 0.938 45 H 0.062 0.938 46 H 0.046 0.954 47 H 0.046 0.954 48 H 0.016 0.984 49 H 0.016 0.984 50 H 0.259 0.741 51 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.258 -3.250 -29.784 31.078 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.080 4.080 3 C -0.143 4.143 4 C -0.078 4.078 5 C -0.173 4.173 6 C -0.137 4.137 7 C -0.072 4.072 8 C -0.126 4.126 9 C 0.042 3.958 10 H 0.106 0.894 11 C -0.222 4.222 12 N -0.384 5.384 13 C 0.301 3.699 14 O -0.412 6.412 15 C -0.179 4.179 16 C -0.140 4.140 17 C -0.147 4.147 18 C -0.018 4.018 19 C -0.557 4.557 20 H 0.073 0.927 21 C -0.146 4.146 22 N -0.535 5.535 23 Si 0.718 3.282 24 H -0.198 1.198 25 H -0.211 1.211 26 H -0.211 1.211 27 C -0.141 4.141 28 H 0.087 0.913 29 H 0.085 0.915 30 H 0.085 0.915 31 H 0.137 0.863 32 H 0.087 0.913 33 H 0.086 0.914 34 H 0.087 0.913 35 H 0.136 0.864 36 H 0.096 0.904 37 H 0.105 0.895 38 H 0.083 0.917 39 H 0.082 0.918 40 H 0.075 0.925 41 H 0.230 0.770 42 H 0.107 0.893 43 H 0.107 0.893 44 H 0.081 0.919 45 H 0.081 0.919 46 H 0.065 0.935 47 H 0.065 0.935 48 H 0.034 0.966 49 H 0.034 0.966 50 H 0.069 0.931 51 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -8.872 -3.779 -29.109 30.665 hybrid contribution 0.888 0.926 0.284 1.314 sum -7.985 -2.853 -28.825 30.047 Atomic orbital electron populations 1.20798 0.91249 1.02956 1.02162 1.19884 0.96020 0.93107 0.98993 1.20903 0.93594 0.97523 1.02322 1.19900 0.93819 0.95344 0.98774 1.20808 1.00154 0.94101 1.02198 1.20821 0.99297 0.91455 1.02157 1.19734 0.93678 0.94676 0.99154 1.20939 1.00531 0.94725 0.96376 1.20865 0.94671 0.88346 0.91903 0.89396 1.22191 1.00853 0.96166 1.02991 1.46143 1.42451 1.42452 1.07326 1.21037 0.83597 0.83563 0.81657 1.90694 1.40331 1.46208 1.63958 1.21786 0.99114 0.98357 0.98630 1.21434 1.01085 1.01020 0.90493 1.21642 0.97262 0.96689 0.99143 1.19103 0.97013 0.97063 0.88597 1.21325 1.21192 1.21425 0.91734 0.92724 1.25047 0.95787 0.96120 0.97675 1.69987 1.37523 1.40238 1.05752 0.86564 0.80787 0.81274 0.79526 1.19787 1.21057 1.21062 1.20870 0.93503 0.97547 1.02170 0.91265 0.91479 0.91503 0.86296 0.91259 0.91449 0.91298 0.86446 0.90406 0.89494 0.91680 0.91788 0.92472 0.77012 0.89311 0.89336 0.91892 0.91873 0.93529 0.93547 0.96602 0.96606 0.93119 0.86278 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.82 10.01 36.01 0.36 -0.46 16 2 C -0.08 -0.74 5.88 -104.62 -0.62 -1.36 16 3 C -0.13 -1.18 9.36 -39.58 -0.37 -1.55 16 4 C -0.08 -0.72 5.88 -104.62 -0.62 -1.34 16 5 C -0.12 -0.85 10.01 36.01 0.36 -0.48 16 6 C -0.12 -1.05 8.75 -39.58 -0.35 -1.39 16 7 C -0.07 -0.64 4.95 -104.63 -0.52 -1.16 16 8 C -0.09 -0.61 4.89 -27.88 -0.14 -0.75 16 9 C 0.15 1.38 2.56 -67.93 -0.17 1.21 16 10 H 0.09 1.06 7.58 -51.93 -0.39 0.67 16 11 C -0.16 -1.42 9.48 37.16 0.35 -1.07 16 12 N -0.73 -7.49 4.53 -53.80 -0.24 -7.73 16 13 C 0.51 7.38 7.79 -10.98 -0.09 7.29 16 14 O -0.54 -10.01 15.64 5.56 0.09 -9.93 16 15 C -0.14 -1.93 5.70 -27.88 -0.16 -2.08 16 16 C -0.10 -1.90 4.50 -26.73 -0.12 -2.02 16 17 C -0.11 -2.32 5.15 -26.73 -0.14 -2.46 16 18 C 0.02 0.52 4.97 -27.88 -0.14 0.38 16 19 C -0.52 -15.15 9.11 -34.44 -0.31 -15.46 16 20 H 0.05 1.54 7.74 -52.49 -0.41 1.13 16 21 C 0.05 1.61 5.46 -17.82 -0.10 1.51 16 22 N -0.90 -27.86 13.29 55.43 0.74 -27.12 16 23 Si 0.89 22.12 29.54 -169.99 -5.02 17.10 16 24 H -0.27 -6.59 7.11 56.52 0.40 -6.19 16 25 H -0.28 -6.98 7.11 56.52 0.40 -6.58 16 26 H -0.28 -6.98 7.11 56.52 0.40 -6.58 16 27 C -0.12 -1.14 9.36 -39.58 -0.37 -1.51 16 28 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 29 H 0.07 0.45 8.09 -51.93 -0.42 0.03 16 30 H 0.07 0.44 8.09 -51.93 -0.42 0.02 16 31 H 0.12 0.94 8.06 -52.49 -0.42 0.52 16 32 H 0.07 0.43 8.14 -51.93 -0.42 0.00 16 33 H 0.07 0.47 8.09 -51.93 -0.42 0.05 16 34 H 0.07 0.47 8.09 -51.93 -0.42 0.05 16 35 H 0.12 0.82 7.57 -52.49 -0.40 0.42 16 36 H 0.08 0.44 8.09 -51.93 -0.42 0.02 16 37 H 0.09 0.50 8.08 -51.93 -0.42 0.08 16 38 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 39 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 40 H 0.06 0.43 8.14 -51.93 -0.42 0.00 16 41 H 0.40 3.02 7.83 -40.82 -0.32 2.70 16 42 H 0.09 1.06 8.14 -51.93 -0.42 0.63 16 43 H 0.09 1.09 8.14 -51.93 -0.42 0.66 16 44 H 0.06 1.26 8.10 -51.93 -0.42 0.84 16 45 H 0.06 1.25 8.10 -51.93 -0.42 0.83 16 46 H 0.05 0.94 8.14 -51.93 -0.42 0.52 16 47 H 0.05 0.94 8.14 -51.93 -0.42 0.52 16 48 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 49 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 50 H 0.26 7.56 8.31 -40.82 -0.34 7.22 16 51 H 0.12 0.93 8.06 -52.49 -0.42 0.51 16 LS Contribution 417.57 15.07 6.29 6.29 Total: -1.00 -34.82 417.57 -10.78 -45.60 By element: Atomic # 1 Polarization: 7.98 SS G_CDS: -9.51 Total: -1.53 kcal Atomic # 6 Polarization: -19.56 SS G_CDS: -3.12 Total: -22.68 kcal Atomic # 7 Polarization: -35.35 SS G_CDS: 0.49 Total: -34.86 kcal Atomic # 8 Polarization: -10.01 SS G_CDS: 0.09 Total: -9.93 kcal Atomic # 14 Polarization: 22.12 SS G_CDS: -5.02 Total: 17.10 kcal Total LS contribution 6.29 Total: 6.29 kcal Total: -34.82 -10.78 -45.60 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000588159292.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.541 kcal (2) G-P(sol) polarization free energy of solvation -34.819 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.360 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.782 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.601 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.142 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds