Wall clock time and date at job start Tue Mar 31 2020 12:24:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53010 * 1 3 3 C 1.52998 * 109.46657 * 2 1 4 4 C 1.53000 * 109.47134 * 60.00248 * 3 2 1 5 5 C 1.52993 * 109.47463 * 299.99757 * 3 2 1 6 6 C 1.50699 * 109.46848 * 179.97438 * 3 2 1 7 7 C 1.38286 * 119.92767 * 180.02562 * 6 3 2 8 8 C 1.38114 * 120.06601 * 180.25261 * 7 6 3 9 9 C 1.38873 * 119.93231 * 359.51868 * 8 7 6 10 10 N 1.39924 * 120.07232 * 180.21063 * 9 8 7 11 11 C 1.34777 * 120.00128 * 33.46006 * 10 9 8 12 12 O 1.21284 * 119.99696 * 5.26991 * 11 10 9 13 13 C 1.50697 * 120.00105 * 185.27367 * 11 10 9 14 14 C 1.52997 * 109.47339 * 179.97438 * 13 11 10 15 15 C 1.52999 * 109.47323 * 179.97438 * 14 13 11 16 16 C 1.53001 * 109.47245 * 180.02562 * 15 14 13 17 17 C 1.50697 * 109.47261 * 180.02562 * 16 15 14 18 18 H 1.08004 * 120.00219 * 359.97438 * 17 16 15 19 19 C 1.37876 * 119.99965 * 179.97438 * 17 16 15 20 20 N 1.31511 * 120.00215 * 359.97438 * 19 17 16 21 21 Si 1.86802 * 119.99929 * 180.02562 * 19 17 16 22 22 H 1.48494 * 109.47484 * 89.99741 * 21 19 17 23 23 H 1.48501 * 109.46967 * 209.99935 * 21 19 17 24 24 H 1.48503 * 109.46991 * 329.99931 * 21 19 17 25 25 C 1.38869 * 119.85638 * 0.49926 * 9 8 7 26 26 C 1.38110 * 119.93217 * 359.73411 * 25 9 8 27 27 H 1.09000 * 109.47323 * 299.99878 * 1 2 3 28 28 H 1.09000 * 109.47020 * 60.00278 * 1 2 3 29 29 H 1.08999 * 109.46703 * 179.97438 * 1 2 3 30 30 H 1.09000 * 109.47323 * 240.00122 * 2 1 3 31 31 H 1.08999 * 109.46555 * 119.99974 * 2 1 3 32 32 H 1.09000 * 109.47057 * 180.02562 * 4 3 2 33 33 H 1.08998 * 109.47106 * 299.99512 * 4 3 2 34 34 H 1.09000 * 109.47597 * 59.99633 * 4 3 2 35 35 H 1.09000 * 109.47149 * 300.00265 * 5 3 2 36 36 H 1.08998 * 109.46956 * 60.00378 * 5 3 2 37 37 H 1.09000 * 109.47527 * 180.02562 * 5 3 2 38 38 H 1.07990 * 119.96579 * 359.97438 * 7 6 3 39 39 H 1.08005 * 120.03422 * 179.72608 * 8 7 6 40 40 H 0.97002 * 119.99850 * 213.46174 * 10 9 8 41 41 H 1.08998 * 109.46975 * 300.00057 * 13 11 10 42 42 H 1.09008 * 109.47124 * 59.99687 * 13 11 10 43 43 H 1.08998 * 109.47439 * 300.00147 * 14 13 11 44 44 H 1.09008 * 109.46963 * 59.99963 * 14 13 11 45 45 H 1.08998 * 109.47098 * 300.00497 * 15 14 13 46 46 H 1.08997 * 109.46937 * 60.00608 * 15 14 13 47 47 H 1.09003 * 109.46869 * 299.99741 * 16 15 14 48 48 H 1.08998 * 109.47235 * 59.99805 * 16 15 14 49 49 H 0.97006 * 120.00252 * 179.97438 * 20 19 17 50 50 H 1.07999 * 120.03573 * 179.70281 * 25 9 8 51 51 H 1.08001 * 119.96839 * 179.97438 * 26 25 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 1.5300 2.1637 1.2493 5 6 1.5300 2.1638 -1.2492 6 6 3.5470 1.4426 0.0006 7 6 4.2368 2.6411 0.0013 8 6 5.6180 2.6444 -0.0034 9 6 6.3139 1.4427 0.0013 10 7 7.7131 1.4427 0.0011 11 6 8.3871 2.4191 0.6405 12 8 7.7846 3.2430 1.2957 13 6 9.8893 2.4872 0.5414 14 6 10.4005 3.6796 1.3523 15 6 11.9256 3.7483 1.2522 16 6 12.4368 4.9404 2.0637 17 6 13.9390 5.0085 1.9646 18 1 14.4755 4.2746 1.3815 19 6 14.6284 6.0076 2.6183 20 7 13.9751 6.9015 3.3280 21 14 16.4904 6.0924 2.4948 22 1 16.8717 6.9323 1.3311 23 1 17.0422 6.6890 3.7378 24 1 17.0376 4.7233 2.3176 25 6 5.6181 0.2409 0.0003 26 6 4.2370 0.2442 0.0001 27 1 -0.3634 0.5138 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 1.8935 -0.5138 -0.8900 31 1 1.8933 -0.5138 0.8900 32 1 1.8929 3.1915 1.2490 33 1 0.4400 2.1637 1.2493 34 1 1.8933 1.6499 2.1393 35 1 1.8934 1.6499 -2.1392 36 1 0.4400 2.1637 -1.2492 37 1 1.8937 3.1913 -1.2494 38 1 3.6951 3.5753 0.0009 39 1 6.1562 3.5808 -0.0074 40 1 8.1980 0.7400 -0.4594 41 1 10.3214 1.5673 0.9353 42 1 10.1795 2.6069 -0.5025 43 1 9.9683 4.5993 0.9580 44 1 10.1102 3.5602 2.3963 45 1 12.3574 2.8286 1.6468 46 1 12.2162 3.8675 0.2085 47 1 12.0050 5.8603 1.6694 48 1 12.1462 4.8209 3.1074 49 1 14.4602 7.6043 3.7882 50 1 6.1564 -0.6954 -0.0009 51 1 3.6953 -0.6901 -0.0011 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000588165782.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:24:47 Heat of formation + Delta-G solvation = -52.860894 kcal Electronic energy + Delta-G solvation = -25387.083448 eV Core-core repulsion = 21863.704602 eV Total energy + Delta-G solvation = -3523.378846 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 317.210 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -40.76744 -39.55895 -37.23445 -34.96513 -34.49572 -32.64642 -31.55791 -30.73825 -29.88835 -28.62483 -27.59347 -25.81010 -24.79464 -23.38003 -22.31407 -21.82434 -20.25585 -20.00091 -19.10713 -17.96692 -16.87603 -16.29507 -16.12367 -15.83169 -15.23351 -15.08976 -14.65058 -14.48786 -14.21242 -13.98807 -13.87677 -13.78517 -13.52873 -13.28157 -12.77015 -12.62471 -12.37160 -12.23418 -12.13547 -12.12719 -11.73555 -11.63806 -11.60118 -11.51149 -11.04704 -10.99237 -10.89881 -10.66133 -10.55817 -10.51122 -10.43144 -10.30367 -9.83852 -9.62267 -9.24134 -9.04698 -8.98931 -8.30570 -8.13018 -5.95266 -3.97917 1.11511 1.27668 2.60031 2.97225 3.34036 3.40113 3.43232 3.65162 4.29467 4.34480 4.48782 4.59433 4.67288 4.82585 4.84901 4.95980 5.01370 5.07416 5.18227 5.23485 5.27673 5.30545 5.36918 5.40011 5.40316 5.48026 5.55073 5.57319 5.59572 5.65822 5.72918 5.77416 5.81063 5.89816 5.98090 6.04425 6.10383 6.19741 6.21720 6.27745 6.39715 6.49207 6.52440 6.81423 6.91083 6.99444 7.18425 7.28716 7.73735 7.89404 8.05728 8.10115 8.47572 9.09723 9.65798 11.15992 Molecular weight = 317.21amu Principal moments of inertia in cm(-1) A = 0.039494 B = 0.001689 C = 0.001649 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 708.801294 B =16578.375528 C =16979.745196 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.115 4.115 3 C -0.022 4.022 4 C -0.141 4.141 5 C -0.140 4.140 6 C -0.091 4.091 7 C -0.094 4.094 8 C -0.119 4.119 9 C 0.148 3.852 10 N -0.682 5.682 11 C 0.511 3.489 12 O -0.514 6.514 13 C -0.138 4.138 14 C -0.104 4.104 15 C -0.110 4.110 16 C 0.019 3.981 17 C -0.521 4.521 18 H 0.054 0.946 19 C 0.055 3.945 20 N -0.895 5.895 21 Si 0.891 3.109 22 H -0.281 1.281 23 H -0.287 1.287 24 H -0.274 1.274 25 C -0.148 4.148 26 C -0.103 4.103 27 H 0.057 0.943 28 H 0.057 0.943 29 H 0.052 0.948 30 H 0.064 0.936 31 H 0.065 0.935 32 H 0.057 0.943 33 H 0.060 0.940 34 H 0.056 0.944 35 H 0.055 0.945 36 H 0.060 0.940 37 H 0.056 0.944 38 H 0.122 0.878 39 H 0.134 0.866 40 H 0.410 0.590 41 H 0.093 0.907 42 H 0.095 0.905 43 H 0.064 0.936 44 H 0.064 0.936 45 H 0.047 0.953 46 H 0.047 0.953 47 H 0.016 0.984 48 H 0.016 0.984 49 H 0.260 0.740 50 H 0.123 0.877 51 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.297 -16.735 -10.457 33.682 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.153 4.153 3 C -0.022 4.022 4 C -0.198 4.198 5 C -0.197 4.197 6 C -0.092 4.092 7 C -0.113 4.113 8 C -0.139 4.139 9 C 0.054 3.946 10 N -0.328 5.328 11 C 0.300 3.700 12 O -0.388 6.388 13 C -0.177 4.177 14 C -0.142 4.142 15 C -0.148 4.148 16 C -0.018 4.018 17 C -0.559 4.559 18 H 0.073 0.927 19 C -0.145 4.145 20 N -0.534 5.534 21 Si 0.719 3.281 22 H -0.207 1.207 23 H -0.212 1.212 24 H -0.199 1.199 25 C -0.169 4.169 26 C -0.122 4.122 27 H 0.076 0.924 28 H 0.076 0.924 29 H 0.071 0.929 30 H 0.083 0.917 31 H 0.083 0.917 32 H 0.076 0.924 33 H 0.079 0.921 34 H 0.075 0.925 35 H 0.074 0.926 36 H 0.079 0.921 37 H 0.075 0.925 38 H 0.140 0.860 39 H 0.152 0.848 40 H 0.245 0.755 41 H 0.112 0.888 42 H 0.113 0.887 43 H 0.083 0.917 44 H 0.083 0.917 45 H 0.066 0.934 46 H 0.066 0.934 47 H 0.034 0.966 48 H 0.034 0.966 49 H 0.070 0.930 50 H 0.141 0.859 51 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -27.618 -15.939 -9.861 33.377 hybrid contribution 1.413 -0.282 -0.222 1.457 sum -26.205 -16.221 -10.082 32.427 Atomic orbital electron populations 1.21914 0.95815 1.01529 1.02140 1.21664 0.95910 0.95626 1.02057 1.19458 0.90663 0.95923 0.96170 1.21953 1.00841 1.00337 0.96711 1.21941 1.00882 1.00260 0.96648 1.19750 0.94700 0.93073 1.01627 1.20846 0.93369 0.97692 0.99402 1.21172 0.94131 0.97762 1.00845 1.17803 0.82868 0.94067 0.99894 1.43767 1.04567 1.29768 1.54703 1.21333 0.91103 0.80016 0.77563 1.90724 1.70370 1.39024 1.38637 1.21824 0.89337 1.02902 1.03679 1.21473 0.97460 0.95617 0.99657 1.21650 0.91751 1.00884 1.00510 1.19099 0.95427 0.92212 0.95031 1.21283 0.92362 1.11988 1.30315 0.92746 1.25039 0.98341 0.95767 0.95398 1.69975 1.35437 1.15634 1.32371 0.86609 0.85884 0.78151 0.77426 1.20709 1.21248 1.19927 1.20871 0.94542 0.96340 1.05105 1.20907 0.93136 0.97908 1.00203 0.92355 0.92401 0.92929 0.91693 0.91657 0.92406 0.92123 0.92488 0.92572 0.92114 0.92452 0.85978 0.84784 0.75470 0.88838 0.88723 0.91706 0.91700 0.93421 0.93419 0.96576 0.96562 0.93046 0.85918 0.85514 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.80 9.21 37.16 0.34 -0.46 16 2 C -0.12 -0.69 3.65 -26.73 -0.10 -0.79 16 3 C -0.02 -0.16 0.63 -155.67 -0.10 -0.25 16 4 C -0.14 -1.00 7.93 37.16 0.29 -0.71 16 5 C -0.14 -0.91 7.93 37.15 0.29 -0.61 16 6 C -0.09 -0.83 4.76 -104.59 -0.50 -1.33 16 7 C -0.09 -1.00 8.70 -39.61 -0.34 -1.35 16 8 C -0.12 -1.50 8.66 -39.39 -0.34 -1.84 16 9 C 0.15 1.71 6.28 -83.69 -0.53 1.18 16 10 N -0.68 -7.24 5.34 -9.86 -0.05 -7.30 16 11 C 0.51 7.02 7.57 -10.99 -0.08 6.94 16 12 O -0.51 -9.14 13.68 5.55 0.08 -9.06 16 13 C -0.14 -1.76 5.70 -27.89 -0.16 -1.91 16 14 C -0.10 -1.83 4.50 -26.73 -0.12 -1.95 16 15 C -0.11 -2.25 5.15 -26.73 -0.14 -2.39 16 16 C 0.02 0.51 4.97 -27.88 -0.14 0.38 16 17 C -0.52 -15.04 9.11 -34.44 -0.31 -15.35 16 18 H 0.05 1.51 7.74 -52.48 -0.41 1.10 16 19 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 20 N -0.89 -27.53 13.29 55.43 0.74 -26.80 16 21 Si 0.89 21.92 29.54 -169.99 -5.02 16.90 16 22 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 23 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 24 H -0.27 -6.57 7.11 56.52 0.40 -6.17 16 25 C -0.15 -1.40 9.96 -39.39 -0.39 -1.80 16 26 C -0.10 -0.91 8.97 -39.61 -0.36 -1.27 16 27 H 0.06 0.30 6.43 -51.93 -0.33 -0.04 16 28 H 0.06 0.28 6.43 -51.93 -0.33 -0.05 16 29 H 0.05 0.24 8.14 -51.93 -0.42 -0.18 16 30 H 0.06 0.38 7.51 -51.93 -0.39 -0.01 16 31 H 0.06 0.40 7.51 -51.93 -0.39 0.01 16 32 H 0.06 0.43 7.38 -51.93 -0.38 0.05 16 33 H 0.06 0.36 6.43 -51.93 -0.33 0.02 16 34 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 35 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 36 H 0.06 0.33 6.43 -51.93 -0.33 0.00 16 37 H 0.06 0.39 7.38 -51.93 -0.38 0.00 16 38 H 0.12 1.14 7.09 -52.49 -0.37 0.77 16 39 H 0.13 1.92 6.43 -52.48 -0.34 1.58 16 40 H 0.41 2.89 8.82 -40.82 -0.36 2.53 16 41 H 0.09 1.01 8.14 -51.93 -0.42 0.59 16 42 H 0.09 1.02 8.14 -51.92 -0.42 0.60 16 43 H 0.06 1.21 8.10 -51.93 -0.42 0.79 16 44 H 0.06 1.22 8.10 -51.92 -0.42 0.80 16 45 H 0.05 0.93 8.14 -51.93 -0.42 0.51 16 46 H 0.05 0.93 8.14 -51.93 -0.42 0.51 16 47 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 48 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 49 H 0.26 7.53 8.31 -40.82 -0.34 7.19 16 50 H 0.12 0.89 8.06 -52.49 -0.42 0.47 16 51 H 0.13 0.86 5.88 -52.49 -0.31 0.55 16 LS Contribution 399.61 15.07 6.02 6.02 Total: -1.00 -33.66 399.61 -9.88 -43.54 By element: Atomic # 1 Polarization: 7.55 SS G_CDS: -8.87 Total: -1.32 kcal Atomic # 6 Polarization: -19.21 SS G_CDS: -2.77 Total: -21.98 kcal Atomic # 7 Polarization: -34.78 SS G_CDS: 0.68 Total: -34.09 kcal Atomic # 8 Polarization: -9.14 SS G_CDS: 0.08 Total: -9.06 kcal Atomic # 14 Polarization: 21.92 SS G_CDS: -5.02 Total: 16.90 kcal Total LS contribution 6.02 Total: 6.02 kcal Total: -33.66 -9.88 -43.54 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000588165782.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.325 kcal (2) G-P(sol) polarization free energy of solvation -33.656 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.981 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.880 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.536 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.861 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds