Wall clock time and date at job start Tue Mar 31 2020 12:24:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53010 * 1 3 3 C 1.52998 * 109.46657 * 2 1 4 4 C 1.53000 * 109.47134 * 60.00248 * 3 2 1 5 5 C 1.52993 * 109.47463 * 299.99757 * 3 2 1 6 6 C 1.50699 * 109.46848 * 179.97438 * 3 2 1 7 7 C 1.38286 * 119.92767 * 180.02562 * 6 3 2 8 8 C 1.38114 * 120.06601 * 180.25261 * 7 6 3 9 9 C 1.38873 * 119.93231 * 359.51868 * 8 7 6 10 10 N 1.39924 * 120.07232 * 180.21063 * 9 8 7 11 11 C 1.34777 * 120.00128 * 33.46006 * 10 9 8 12 12 O 1.21284 * 119.99696 * 5.26991 * 11 10 9 13 13 C 1.50697 * 120.00105 * 185.27367 * 11 10 9 14 14 C 1.52997 * 109.47339 * 179.97438 * 13 11 10 15 15 C 1.52999 * 109.47323 * 179.97438 * 14 13 11 16 16 C 1.53001 * 109.47245 * 180.02562 * 15 14 13 17 17 C 1.50697 * 109.47261 * 180.02562 * 16 15 14 18 18 H 1.08004 * 120.00219 * 359.97438 * 17 16 15 19 19 C 1.37876 * 119.99965 * 179.97438 * 17 16 15 20 20 N 1.31511 * 120.00215 * 359.97438 * 19 17 16 21 21 Si 1.86802 * 119.99929 * 180.02562 * 19 17 16 22 22 H 1.48494 * 109.47484 * 89.99741 * 21 19 17 23 23 H 1.48501 * 109.46967 * 209.99935 * 21 19 17 24 24 H 1.48503 * 109.46991 * 329.99931 * 21 19 17 25 25 C 1.38869 * 119.85638 * 0.49926 * 9 8 7 26 26 C 1.38110 * 119.93217 * 359.73411 * 25 9 8 27 27 H 1.09000 * 109.47323 * 299.99878 * 1 2 3 28 28 H 1.09000 * 109.47020 * 60.00278 * 1 2 3 29 29 H 1.08999 * 109.46703 * 179.97438 * 1 2 3 30 30 H 1.09000 * 109.47323 * 240.00122 * 2 1 3 31 31 H 1.08999 * 109.46555 * 119.99974 * 2 1 3 32 32 H 1.09000 * 109.47057 * 180.02562 * 4 3 2 33 33 H 1.08998 * 109.47106 * 299.99512 * 4 3 2 34 34 H 1.09000 * 109.47597 * 59.99633 * 4 3 2 35 35 H 1.09000 * 109.47149 * 300.00265 * 5 3 2 36 36 H 1.08998 * 109.46956 * 60.00378 * 5 3 2 37 37 H 1.09000 * 109.47527 * 180.02562 * 5 3 2 38 38 H 1.07990 * 119.96579 * 359.97438 * 7 6 3 39 39 H 1.08005 * 120.03422 * 179.72608 * 8 7 6 40 40 H 0.97002 * 119.99850 * 213.46174 * 10 9 8 41 41 H 1.08998 * 109.46975 * 300.00057 * 13 11 10 42 42 H 1.09008 * 109.47124 * 59.99687 * 13 11 10 43 43 H 1.08998 * 109.47439 * 300.00147 * 14 13 11 44 44 H 1.09008 * 109.46963 * 59.99963 * 14 13 11 45 45 H 1.08998 * 109.47098 * 300.00497 * 15 14 13 46 46 H 1.08997 * 109.46937 * 60.00608 * 15 14 13 47 47 H 1.09003 * 109.46869 * 299.99741 * 16 15 14 48 48 H 1.08998 * 109.47235 * 59.99805 * 16 15 14 49 49 H 0.97006 * 120.00252 * 179.97438 * 20 19 17 50 50 H 1.07999 * 120.03573 * 179.70281 * 25 9 8 51 51 H 1.08001 * 119.96839 * 179.97438 * 26 25 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 1.5300 2.1637 1.2493 5 6 1.5300 2.1638 -1.2492 6 6 3.5470 1.4426 0.0006 7 6 4.2368 2.6411 0.0013 8 6 5.6180 2.6444 -0.0034 9 6 6.3139 1.4427 0.0013 10 7 7.7131 1.4427 0.0011 11 6 8.3871 2.4191 0.6405 12 8 7.7846 3.2430 1.2957 13 6 9.8893 2.4872 0.5414 14 6 10.4005 3.6796 1.3523 15 6 11.9256 3.7483 1.2522 16 6 12.4368 4.9404 2.0637 17 6 13.9390 5.0085 1.9646 18 1 14.4755 4.2746 1.3815 19 6 14.6284 6.0076 2.6183 20 7 13.9751 6.9015 3.3280 21 14 16.4904 6.0924 2.4948 22 1 16.8717 6.9323 1.3311 23 1 17.0422 6.6890 3.7378 24 1 17.0376 4.7233 2.3176 25 6 5.6181 0.2409 0.0003 26 6 4.2370 0.2442 0.0001 27 1 -0.3634 0.5138 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 1.8935 -0.5138 -0.8900 31 1 1.8933 -0.5138 0.8900 32 1 1.8929 3.1915 1.2490 33 1 0.4400 2.1637 1.2493 34 1 1.8933 1.6499 2.1393 35 1 1.8934 1.6499 -2.1392 36 1 0.4400 2.1637 -1.2492 37 1 1.8937 3.1913 -1.2494 38 1 3.6951 3.5753 0.0009 39 1 6.1562 3.5808 -0.0074 40 1 8.1980 0.7400 -0.4594 41 1 10.3214 1.5673 0.9353 42 1 10.1795 2.6069 -0.5025 43 1 9.9683 4.5993 0.9580 44 1 10.1102 3.5602 2.3963 45 1 12.3574 2.8286 1.6468 46 1 12.2162 3.8675 0.2085 47 1 12.0050 5.8603 1.6694 48 1 12.1462 4.8209 3.1074 49 1 14.4602 7.6043 3.7882 50 1 6.1564 -0.6954 -0.0009 51 1 3.6953 -0.6901 -0.0011 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000588165782.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:24:47 Heat of formation + Delta-G solvation = -70.827854 kcal Electronic energy + Delta-G solvation = -25387.862554 eV Core-core repulsion = 21863.704602 eV Total energy + Delta-G solvation = -3524.157952 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 317.210 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.66899 -40.39592 -38.01292 -36.63378 -35.42201 -34.62252 -32.25481 -31.84679 -31.03589 -29.55623 -28.13885 -27.46616 -25.51061 -24.64072 -23.48320 -22.70346 -21.76706 -21.22876 -19.73662 -18.84497 -18.40508 -17.89929 -17.06847 -16.82954 -16.50716 -16.05857 -15.68685 -15.55736 -15.33627 -15.03133 -14.61624 -14.55049 -14.40975 -14.30757 -13.99461 -13.81587 -13.60500 -13.40569 -13.28352 -12.85355 -12.82165 -12.72822 -12.65121 -12.35285 -12.33699 -12.17157 -12.15062 -12.05533 -11.57095 -11.52612 -11.39146 -11.35219 -11.24373 -11.18730 -11.07726 -10.74637 -10.55354 -9.85268 -8.96553 -8.18999 -6.31337 0.29091 0.47345 1.40235 1.42511 1.53583 1.58557 2.06121 2.41795 2.85415 3.13777 3.67929 3.69381 3.79622 3.99862 4.08263 4.09942 4.11848 4.13644 4.36968 4.45621 4.54770 4.56377 4.57360 4.66584 4.69896 4.71610 4.80805 4.82349 4.84160 4.86268 4.96075 5.04741 5.11007 5.15391 5.17213 5.19800 5.20419 5.28004 5.32031 5.35857 5.40097 5.41507 5.52745 5.53189 5.56863 5.62870 5.76341 5.77453 5.87614 6.10125 6.24769 6.43644 6.87217 7.14617 7.38433 8.93158 Molecular weight = 317.21amu Principal moments of inertia in cm(-1) A = 0.039494 B = 0.001689 C = 0.001649 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 708.801294 B =16578.375528 C =16979.745196 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.113 4.113 3 C -0.021 4.021 4 C -0.141 4.141 5 C -0.139 4.139 6 C -0.088 4.088 7 C -0.105 4.105 8 C -0.144 4.144 9 C 0.126 3.874 10 N -0.663 5.663 11 C 0.510 3.490 12 O -0.565 6.565 13 C -0.125 4.125 14 C -0.097 4.097 15 C -0.096 4.096 16 C 0.017 3.983 17 C -0.543 4.543 18 H 0.067 0.933 19 C -0.007 4.007 20 N -0.938 5.938 21 Si 0.970 3.030 22 H -0.272 1.272 23 H -0.284 1.284 24 H -0.259 1.259 25 C -0.141 4.141 26 C -0.103 4.103 27 H 0.057 0.943 28 H 0.060 0.940 29 H 0.058 0.942 30 H 0.070 0.930 31 H 0.065 0.935 32 H 0.047 0.953 33 H 0.074 0.926 34 H 0.048 0.952 35 H 0.055 0.945 36 H 0.073 0.927 37 H 0.049 0.951 38 H 0.124 0.876 39 H 0.106 0.894 40 H 0.429 0.571 41 H 0.125 0.875 42 H 0.124 0.876 43 H 0.043 0.957 44 H 0.043 0.957 45 H 0.062 0.938 46 H 0.062 0.938 47 H -0.016 1.016 48 H -0.016 1.016 49 H 0.263 0.737 50 H 0.151 0.849 51 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.247 -19.863 -11.984 35.785 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.150 4.150 3 C -0.021 4.021 4 C -0.198 4.198 5 C -0.196 4.196 6 C -0.089 4.089 7 C -0.124 4.124 8 C -0.164 4.164 9 C 0.032 3.968 10 N -0.310 5.310 11 C 0.300 3.700 12 O -0.443 6.443 13 C -0.164 4.164 14 C -0.135 4.135 15 C -0.133 4.133 16 C -0.020 4.020 17 C -0.581 4.581 18 H 0.085 0.915 19 C -0.204 4.204 20 N -0.578 5.578 21 Si 0.794 3.206 22 H -0.197 1.197 23 H -0.210 1.210 24 H -0.183 1.183 25 C -0.161 4.161 26 C -0.122 4.122 27 H 0.076 0.924 28 H 0.079 0.921 29 H 0.078 0.922 30 H 0.089 0.911 31 H 0.084 0.916 32 H 0.067 0.933 33 H 0.093 0.907 34 H 0.068 0.932 35 H 0.074 0.926 36 H 0.092 0.908 37 H 0.068 0.932 38 H 0.142 0.858 39 H 0.124 0.876 40 H 0.268 0.732 41 H 0.143 0.857 42 H 0.142 0.858 43 H 0.062 0.938 44 H 0.062 0.938 45 H 0.081 0.919 46 H 0.081 0.919 47 H 0.003 0.997 48 H 0.003 0.997 49 H 0.071 0.929 50 H 0.169 0.831 51 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges -27.574 -19.121 -11.429 35.448 hybrid contribution 1.287 0.707 0.265 1.492 sum -26.287 -18.414 -11.164 33.981 Atomic orbital electron populations 1.21904 0.95035 1.02058 1.02286 1.21653 0.96591 0.94472 1.02328 1.19501 0.89216 0.97058 0.96337 1.21954 1.01748 0.99689 0.96441 1.21930 1.01692 0.99718 0.96249 1.20035 0.95972 0.92657 1.00254 1.20937 0.92810 0.98754 0.99877 1.21116 0.95059 0.97396 1.02871 1.17982 0.83158 0.94488 1.01206 1.43505 1.04447 1.29304 1.53744 1.21470 0.91495 0.79906 0.77138 1.90719 1.71295 1.41146 1.41150 1.21692 0.88606 1.01637 1.04492 1.21258 0.95590 0.97297 0.99362 1.21445 0.93367 0.98440 1.00056 1.19067 0.95078 0.93709 0.94117 1.21766 0.93486 1.12388 1.30432 0.91501 1.26094 1.04263 0.95229 0.94794 1.70134 1.37847 1.16447 1.33371 0.85377 0.78737 0.78906 0.77590 1.19726 1.20965 1.18279 1.21178 0.94925 0.96473 1.03539 1.21278 0.93164 0.98723 0.98998 0.92404 0.92070 0.92249 0.91095 0.91634 0.93344 0.90691 0.93239 0.92598 0.90811 0.93207 0.85795 0.87635 0.73181 0.85736 0.85844 0.93837 0.93831 0.91913 0.91946 0.99750 0.99718 0.92882 0.83085 0.82929 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.23 9.21 71.99 0.66 -0.56 16 2 C -0.11 -1.09 3.65 30.60 0.11 -0.98 16 3 C -0.02 -0.27 0.63 -52.93 -0.03 -0.31 16 4 C -0.14 -1.90 7.93 71.98 0.57 -1.33 16 5 C -0.14 -1.64 7.93 71.98 0.57 -1.06 16 6 C -0.09 -1.55 4.76 -19.84 -0.09 -1.64 16 7 C -0.11 -2.32 8.70 22.25 0.19 -2.13 16 8 C -0.14 -3.83 8.66 22.39 0.19 -3.63 16 9 C 0.13 2.83 6.28 38.15 0.24 3.07 16 10 N -0.66 -13.24 5.34 -303.51 -1.62 -14.86 16 11 C 0.51 13.93 7.57 87.66 0.66 14.59 16 12 O -0.57 -21.20 13.68 -3.04 -0.04 -21.24 16 13 C -0.12 -2.97 5.70 29.85 0.17 -2.80 16 14 C -0.10 -3.47 4.50 30.59 0.14 -3.33 16 15 C -0.10 -3.88 5.15 30.59 0.16 -3.72 16 16 C 0.02 0.96 4.97 29.85 0.15 1.11 16 17 C -0.54 -31.59 9.11 25.60 0.23 -31.36 16 18 H 0.07 3.64 7.74 -2.91 -0.02 3.61 16 19 C -0.01 -0.39 5.46 84.65 0.46 0.07 16 20 N -0.94 -59.29 13.29 21.45 0.28 -59.01 16 21 Si 0.97 44.93 29.54 68.60 2.03 46.95 16 22 H -0.27 -12.13 7.11 99.48 0.71 -11.42 16 23 H -0.28 -12.94 7.11 99.48 0.71 -12.23 16 24 H -0.26 -11.26 7.11 99.48 0.71 -10.55 16 25 C -0.14 -2.36 9.96 22.39 0.22 -2.14 16 26 C -0.10 -1.60 8.97 22.25 0.20 -1.40 16 27 H 0.06 0.46 6.43 -2.39 -0.02 0.45 16 28 H 0.06 0.45 6.43 -2.39 -0.02 0.43 16 29 H 0.06 0.40 8.14 -2.39 -0.02 0.38 16 30 H 0.07 0.62 7.51 -2.39 -0.02 0.60 16 31 H 0.06 0.64 7.51 -2.39 -0.02 0.62 16 32 H 0.05 0.73 7.38 -2.39 -0.02 0.72 16 33 H 0.07 0.78 6.43 -2.39 -0.02 0.77 16 34 H 0.05 0.73 8.14 -2.39 -0.02 0.72 16 35 H 0.05 0.66 8.14 -2.39 -0.02 0.64 16 36 H 0.07 0.68 6.43 -2.39 -0.02 0.66 16 37 H 0.05 0.66 7.38 -2.39 -0.02 0.64 16 38 H 0.12 2.53 7.09 -2.92 -0.02 2.51 16 39 H 0.11 3.36 6.43 -2.91 -0.02 3.34 16 40 H 0.43 4.88 8.82 -92.71 -0.82 4.06 16 41 H 0.12 2.26 8.14 -2.39 -0.02 2.24 16 42 H 0.12 2.29 8.14 -2.38 -0.02 2.27 16 43 H 0.04 1.71 8.10 -2.39 -0.02 1.69 16 44 H 0.04 1.72 8.10 -2.38 -0.02 1.70 16 45 H 0.06 2.36 8.14 -2.39 -0.02 2.34 16 46 H 0.06 2.35 8.14 -2.39 -0.02 2.33 16 47 H -0.02 -0.96 8.14 -2.39 -0.02 -0.98 16 48 H -0.02 -0.94 8.14 -2.39 -0.02 -0.96 16 49 H 0.26 15.55 8.31 -92.70 -0.77 14.78 16 50 H 0.15 1.62 8.06 -2.91 -0.02 1.60 16 51 H 0.15 1.56 5.88 -2.91 -0.02 1.54 16 Total: -1.00 -76.77 399.61 5.54 -71.23 By element: Atomic # 1 Polarization: 14.40 SS G_CDS: 0.08 Total: 14.49 kcal Atomic # 6 Polarization: -42.37 SS G_CDS: 4.81 Total: -37.56 kcal Atomic # 7 Polarization: -72.53 SS G_CDS: -1.34 Total: -73.87 kcal Atomic # 8 Polarization: -21.20 SS G_CDS: -0.04 Total: -21.24 kcal Atomic # 14 Polarization: 44.93 SS G_CDS: 2.03 Total: 46.95 kcal Total: -76.77 5.54 -71.23 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000588165782.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.401 kcal (2) G-P(sol) polarization free energy of solvation -76.772 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.371 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.544 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.229 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.828 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds