Wall clock time and date at job start Tue Mar 31 2020 11:57:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.50703 * 109.46912 * 2 1 4 4 C 1.38234 * 119.99770 * 269.72838 * 3 2 1 5 5 C 1.38239 * 119.99901 * 179.76875 * 4 3 2 6 6 C 1.38240 * 119.99645 * 0.50240 * 5 4 3 7 7 C 1.50698 * 119.99659 * 179.72727 * 6 5 4 8 8 H 1.09003 * 109.47112 * 180.02562 * 7 6 5 9 9 C 1.52996 * 109.47457 * 60.02455 * 7 6 5 10 10 C 1.50703 * 109.47465 * 300.02380 * 7 6 5 11 11 O 1.21280 * 119.99687 * 0.02562 * 10 7 6 12 12 N 1.34767 * 120.00435 * 180.02562 * 10 7 6 13 13 C 1.46504 * 120.00235 * 179.97438 * 12 10 7 14 14 C 1.52998 * 109.47060 * 179.97438 * 13 12 10 15 15 C 1.52996 * 109.47531 * 300.00080 * 14 13 12 16 16 C 1.52999 * 109.47002 * 60.00191 * 14 13 12 17 17 C 1.52998 * 109.47039 * 179.97438 * 14 13 12 18 18 C 1.50698 * 109.47243 * 179.97438 * 17 14 13 19 19 H 1.07998 * 120.00164 * 0.02562 * 18 17 14 20 20 C 1.37875 * 120.00301 * 180.02562 * 18 17 14 21 21 N 1.31519 * 120.00048 * 0.02562 * 20 18 17 22 22 Si 1.86799 * 120.00420 * 180.02562 * 20 18 17 23 23 H 1.48504 * 109.47130 * 359.97438 * 22 20 18 24 24 H 1.48498 * 109.47488 * 120.00018 * 22 20 18 25 25 H 1.48503 * 109.46917 * 240.00335 * 22 20 18 26 26 C 1.38227 * 120.00205 * 359.74956 * 6 5 4 27 27 C 1.38232 * 119.99860 * 90.00280 * 3 2 1 28 28 H 1.09004 * 109.46724 * 180.02562 * 1 2 3 29 29 H 1.09001 * 109.47194 * 299.99742 * 1 2 3 30 30 H 1.08992 * 109.47399 * 59.99914 * 1 2 3 31 31 H 1.09002 * 109.47398 * 120.00078 * 2 1 3 32 32 H 1.09001 * 109.47194 * 240.00258 * 2 1 3 33 33 H 1.08001 * 120.00330 * 359.97438 * 4 3 2 34 34 H 1.08001 * 119.99843 * 180.23314 * 5 4 3 35 35 H 1.09001 * 109.47290 * 59.99484 * 9 7 6 36 36 H 1.08992 * 109.47505 * 179.97438 * 9 7 6 37 37 H 1.09003 * 109.46818 * 300.00007 * 9 7 6 38 38 H 0.97001 * 119.99839 * 359.97438 * 12 10 7 39 39 H 1.08990 * 109.46753 * 299.99910 * 13 12 10 40 40 H 1.08996 * 109.46824 * 60.00021 * 13 12 10 41 41 H 1.09002 * 109.46780 * 59.99807 * 15 14 13 42 42 H 1.09005 * 109.47406 * 179.97438 * 15 14 13 43 43 H 1.08996 * 109.47193 * 300.00279 * 15 14 13 44 44 H 1.09001 * 109.47749 * 59.99886 * 16 14 13 45 45 H 1.09005 * 109.47291 * 180.02562 * 16 14 13 46 46 H 1.09001 * 109.47657 * 299.99541 * 16 14 13 47 47 H 1.08997 * 109.47497 * 300.00181 * 17 14 13 48 48 H 1.09000 * 109.47471 * 60.00190 * 17 14 13 49 49 H 0.96997 * 120.00226 * 179.97438 * 21 20 18 50 50 H 1.07996 * 120.00251 * 179.97438 * 26 6 5 51 51 H 1.07998 * 120.00407 * 0.02562 * 27 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 6 2.2680 2.0706 -1.1972 5 6 2.7242 3.3755 -1.1972 6 6 2.9545 4.0272 0.0000 7 6 3.4577 5.4477 -0.0001 8 1 3.5791 5.7902 1.0276 9 6 2.4505 6.3456 -0.7212 10 6 4.7853 5.5104 -0.7106 11 8 5.2744 4.5011 -1.1719 12 7 5.4290 6.6881 -0.8333 13 6 6.7198 6.7489 -1.5235 14 6 7.2305 8.1911 -1.5237 15 6 6.2235 9.0888 -2.2454 16 6 7.4003 8.6721 -0.0812 17 6 8.5789 8.2545 -2.2439 18 6 9.0817 9.6752 -2.2446 19 1 8.4982 10.4548 -1.7777 20 6 10.2867 9.9797 -2.8414 21 7 10.9972 9.0305 -3.4105 22 14 10.9103 11.7405 -2.8417 23 1 9.9322 12.6122 -2.1426 24 1 12.2184 11.8026 -2.1414 25 1 11.0759 12.2068 -4.2419 26 6 2.7238 3.3757 1.1971 27 6 2.2627 2.0725 1.1971 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3634 0.5138 0.8900 30 1 -0.3634 0.5138 -0.8899 31 1 1.8934 -0.5138 0.8900 32 1 1.8934 -0.5138 -0.8900 33 1 2.0926 1.5598 -2.1325 34 1 2.9047 3.8844 -2.1326 35 1 1.4902 6.3002 -0.2074 36 1 2.8142 7.3730 -0.7209 37 1 2.3291 6.0030 -1.7489 38 1 5.0376 7.4954 -0.4647 39 1 7.4370 6.1091 -1.0096 40 1 6.5987 6.4066 -2.5512 41 1 5.2631 9.0435 -1.7319 42 1 6.5872 10.1164 -2.2451 43 1 6.1025 8.7461 -3.2730 44 1 8.1178 8.0327 0.4331 45 1 7.7638 9.6998 -0.0813 46 1 6.4400 8.6269 0.4324 47 1 9.2961 7.6151 -1.7294 48 1 8.4584 7.9117 -3.2716 49 1 11.8448 9.2447 -3.8307 50 1 2.9042 3.8847 2.1324 51 1 2.0832 1.5632 2.1325 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000588177530.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:57:55 Heat of formation + Delta-G solvation = -52.156264 kcal Electronic energy + Delta-G solvation = -26343.768263 eV Core-core repulsion = 22820.419972 eV Total energy + Delta-G solvation = -3523.348291 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 317.210 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -40.34872 -39.04089 -37.14592 -35.15452 -33.70859 -32.74285 -31.92136 -30.98344 -28.73109 -27.14547 -26.52738 -26.31765 -24.94340 -23.45908 -22.84604 -22.45096 -20.85912 -19.81189 -18.29537 -16.86072 -16.63892 -16.27256 -15.66799 -15.60486 -14.99166 -14.85523 -14.49135 -14.11588 -13.95114 -13.76428 -13.73537 -13.45158 -13.24450 -13.10210 -12.78188 -12.65467 -12.59031 -12.17518 -12.10513 -12.03909 -11.74648 -11.61658 -11.34778 -11.15420 -11.03579 -10.90484 -10.89800 -10.84426 -10.65768 -10.41356 -10.25096 -9.89006 -9.67114 -9.17167 -8.93287 -8.91140 -8.69734 -8.57979 -8.37236 -6.00961 -4.02321 1.24601 1.39181 2.84039 3.29237 3.36732 3.38294 3.40706 3.79252 4.41751 4.44221 4.59903 4.64114 4.77616 4.91235 4.97556 5.05693 5.12097 5.14469 5.29861 5.34530 5.38014 5.41910 5.48766 5.53288 5.61728 5.62569 5.63563 5.73516 5.74139 5.86967 5.90918 5.99061 6.03395 6.15737 6.21590 6.28861 6.35760 6.38489 6.53972 6.56792 6.57337 6.61626 6.76889 6.95122 7.05169 7.06132 7.11935 7.63292 7.75391 7.76867 7.97868 8.39065 8.46474 9.02784 9.60893 11.10483 Molecular weight = 317.21amu Principal moments of inertia in cm(-1) A = 0.034492 B = 0.002159 C = 0.002113 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 811.592655 B =12963.509166 C =13248.809686 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.085 4.085 3 C -0.085 4.085 4 C -0.120 4.120 5 C -0.079 4.079 6 C -0.067 4.067 7 C -0.073 4.073 8 H 0.101 0.899 9 C -0.140 4.140 10 C 0.510 3.490 11 O -0.536 6.536 12 N -0.721 5.721 13 C 0.129 3.871 14 C -0.073 4.073 15 C -0.127 4.127 16 C -0.127 4.127 17 C 0.036 3.964 18 C -0.511 4.511 19 H 0.060 0.940 20 C 0.055 3.945 21 N -0.894 5.894 22 Si 0.889 3.111 23 H -0.273 1.273 24 H -0.285 1.285 25 H -0.285 1.285 26 C -0.110 4.110 27 C -0.122 4.122 28 H 0.055 0.945 29 H 0.055 0.945 30 H 0.055 0.945 31 H 0.070 0.930 32 H 0.070 0.930 33 H 0.119 0.881 34 H 0.119 0.881 35 H 0.067 0.933 36 H 0.065 0.935 37 H 0.063 0.937 38 H 0.397 0.603 39 H 0.063 0.937 40 H 0.063 0.937 41 H 0.028 0.972 42 H 0.067 0.933 43 H 0.047 0.953 44 H 0.047 0.953 45 H 0.067 0.933 46 H 0.028 0.972 47 H 0.018 0.982 48 H 0.018 0.982 49 H 0.259 0.741 50 H 0.119 0.881 51 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.118 -11.400 8.898 26.426 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.122 4.122 3 C -0.085 4.085 4 C -0.138 4.138 5 C -0.097 4.097 6 C -0.068 4.068 7 C -0.095 4.095 8 H 0.119 0.881 9 C -0.198 4.198 10 C 0.295 3.705 11 O -0.412 6.412 12 N -0.372 5.372 13 C 0.006 3.994 14 C -0.073 4.073 15 C -0.184 4.184 16 C -0.184 4.184 17 C -0.002 4.002 18 C -0.549 4.549 19 H 0.078 0.922 20 C -0.146 4.146 21 N -0.534 5.534 22 Si 0.717 3.283 23 H -0.198 1.198 24 H -0.211 1.211 25 H -0.211 1.211 26 C -0.128 4.128 27 C -0.140 4.140 28 H 0.075 0.925 29 H 0.074 0.926 30 H 0.074 0.926 31 H 0.088 0.912 32 H 0.089 0.911 33 H 0.137 0.863 34 H 0.137 0.863 35 H 0.086 0.914 36 H 0.084 0.916 37 H 0.082 0.918 38 H 0.233 0.767 39 H 0.081 0.919 40 H 0.081 0.919 41 H 0.047 0.953 42 H 0.086 0.914 43 H 0.066 0.934 44 H 0.066 0.934 45 H 0.086 0.914 46 H 0.047 0.953 47 H 0.036 0.964 48 H 0.036 0.964 49 H 0.069 0.931 50 H 0.137 0.863 51 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -21.582 -12.152 8.458 26.172 hybrid contribution 0.480 1.377 0.109 1.462 sum -21.102 -10.775 8.567 25.195 Atomic orbital electron populations 1.21741 0.94841 1.01529 1.02176 1.20535 0.96051 0.92883 1.02767 1.19853 0.99335 0.96061 0.93273 1.20966 1.00512 0.94859 0.97421 1.20896 0.96652 0.94526 0.97644 1.19290 0.99498 0.94411 0.93572 1.20310 0.93504 0.94204 1.01441 0.88052 1.21789 0.98388 0.98688 1.00906 1.20402 0.86210 0.83633 0.80210 1.90718 1.67736 1.34378 1.48412 1.46196 1.22896 1.09664 1.58484 1.21610 0.82835 0.98425 0.96531 1.20902 0.98884 0.91083 0.96443 1.21757 0.96114 1.01232 0.99284 1.21762 0.98864 1.02613 0.95188 1.19091 0.88644 0.97407 0.95031 1.21220 1.04281 0.93702 1.35676 0.92197 1.25028 0.97015 0.96919 0.95638 1.69977 1.13852 1.32013 1.37509 0.86586 0.78798 0.85248 0.77642 1.19805 1.21139 1.21145 1.20964 0.99787 0.94910 0.97153 1.20896 1.00959 0.94790 0.97364 0.92547 0.92625 0.92564 0.91178 0.91109 0.86337 0.86308 0.91370 0.91600 0.91796 0.76729 0.91913 0.91902 0.95259 0.91440 0.93377 0.93377 0.91432 0.95267 0.96365 0.96363 0.93094 0.86253 0.86364 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.96 9.89 37.16 0.37 -0.59 16 2 C -0.09 -0.66 6.07 -27.88 -0.17 -0.83 16 3 C -0.09 -0.87 5.13 -104.62 -0.54 -1.41 16 4 C -0.12 -1.34 9.70 -39.58 -0.38 -1.72 16 5 C -0.08 -0.98 7.93 -39.58 -0.31 -1.30 16 6 C -0.07 -0.80 4.40 -104.63 -0.46 -1.26 16 7 C -0.07 -0.79 2.90 -92.92 -0.27 -1.06 16 8 H 0.10 0.91 7.88 -51.93 -0.41 0.50 16 9 C -0.14 -1.22 8.90 37.16 0.33 -0.89 16 10 C 0.51 7.49 7.02 -10.99 -0.08 7.41 16 11 O -0.54 -10.08 15.11 5.56 0.08 -9.99 16 12 N -0.72 -10.22 4.85 -60.30 -0.29 -10.51 16 13 C 0.13 2.27 4.56 -4.04 -0.02 2.25 16 14 C -0.07 -1.36 0.54 -154.51 -0.08 -1.45 16 15 C -0.13 -2.18 8.05 37.16 0.30 -1.88 16 16 C -0.13 -2.20 8.05 37.16 0.30 -1.90 16 17 C 0.04 0.87 4.04 -27.88 -0.11 0.76 16 18 C -0.51 -13.49 7.65 -34.44 -0.26 -13.76 16 19 H 0.06 1.52 5.68 -52.49 -0.30 1.22 16 20 C 0.05 1.53 5.46 -17.82 -0.10 1.43 16 21 N -0.89 -26.40 13.29 55.43 0.74 -25.67 16 22 Si 0.89 21.14 29.54 -169.99 -5.02 16.12 16 23 H -0.27 -6.31 7.11 56.52 0.40 -5.91 16 24 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 25 H -0.29 -6.79 7.11 56.52 0.40 -6.38 16 26 C -0.11 -1.18 9.67 -39.58 -0.38 -1.56 16 27 C -0.12 -1.23 9.70 -39.58 -0.38 -1.62 16 28 H 0.06 0.31 8.14 -51.93 -0.42 -0.12 16 29 H 0.05 0.37 8.14 -51.93 -0.42 -0.06 16 30 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 31 H 0.07 0.49 8.09 -51.93 -0.42 0.07 16 32 H 0.07 0.52 8.08 -51.93 -0.42 0.10 16 33 H 0.12 1.13 8.06 -52.49 -0.42 0.71 16 34 H 0.12 1.50 7.52 -52.49 -0.39 1.11 16 35 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 36 H 0.07 0.51 7.57 -51.93 -0.39 0.12 16 37 H 0.06 0.60 7.39 -51.93 -0.38 0.22 16 38 H 0.40 4.70 5.58 -40.82 -0.23 4.47 16 39 H 0.06 1.20 8.14 -51.93 -0.42 0.77 16 40 H 0.06 1.19 8.14 -51.93 -0.42 0.77 16 41 H 0.03 0.40 6.86 -51.93 -0.36 0.04 16 42 H 0.07 1.25 6.62 -51.93 -0.34 0.91 16 43 H 0.05 0.85 8.14 -51.93 -0.42 0.43 16 44 H 0.05 0.86 8.14 -51.93 -0.42 0.43 16 45 H 0.07 1.26 6.62 -51.93 -0.34 0.92 16 46 H 0.03 0.40 6.86 -51.93 -0.36 0.05 16 47 H 0.02 0.48 8.14 -51.93 -0.42 0.06 16 48 H 0.02 0.48 8.14 -51.93 -0.42 0.06 16 49 H 0.26 7.27 8.31 -40.82 -0.34 6.93 16 50 H 0.12 1.03 7.95 -52.49 -0.42 0.62 16 51 H 0.12 0.95 8.06 -52.49 -0.42 0.52 16 LS Contribution 402.30 15.07 6.06 6.06 Total: -1.00 -31.47 402.30 -9.66 -41.13 By element: Atomic # 1 Polarization: 11.19 SS G_CDS: -8.97 Total: 2.22 kcal Atomic # 6 Polarization: -17.11 SS G_CDS: -2.26 Total: -19.36 kcal Atomic # 7 Polarization: -36.62 SS G_CDS: 0.44 Total: -36.18 kcal Atomic # 8 Polarization: -10.08 SS G_CDS: 0.08 Total: -9.99 kcal Atomic # 14 Polarization: 21.14 SS G_CDS: -5.02 Total: 16.12 kcal Total LS contribution 6.06 Total: 6.06 kcal Total: -31.47 -9.66 -41.13 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000588177530.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.024 kcal (2) G-P(sol) polarization free energy of solvation -31.475 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.498 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.658 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.133 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.156 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds