Wall clock time and date at job start Tue Mar 31 2020 11:57:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.50703 * 109.46912 * 2 1 4 4 C 1.38234 * 119.99770 * 269.72838 * 3 2 1 5 5 C 1.38239 * 119.99901 * 179.76875 * 4 3 2 6 6 C 1.38240 * 119.99645 * 0.50240 * 5 4 3 7 7 C 1.50698 * 119.99659 * 179.72727 * 6 5 4 8 8 H 1.09003 * 109.47112 * 180.02562 * 7 6 5 9 9 C 1.52996 * 109.47457 * 60.02455 * 7 6 5 10 10 C 1.50703 * 109.47465 * 300.02380 * 7 6 5 11 11 O 1.21280 * 119.99687 * 0.02562 * 10 7 6 12 12 N 1.34767 * 120.00435 * 180.02562 * 10 7 6 13 13 C 1.46504 * 120.00235 * 179.97438 * 12 10 7 14 14 C 1.52998 * 109.47060 * 179.97438 * 13 12 10 15 15 C 1.52996 * 109.47531 * 300.00080 * 14 13 12 16 16 C 1.52999 * 109.47002 * 60.00191 * 14 13 12 17 17 C 1.52998 * 109.47039 * 179.97438 * 14 13 12 18 18 C 1.50698 * 109.47243 * 179.97438 * 17 14 13 19 19 H 1.07998 * 120.00164 * 0.02562 * 18 17 14 20 20 C 1.37875 * 120.00301 * 180.02562 * 18 17 14 21 21 N 1.31519 * 120.00048 * 0.02562 * 20 18 17 22 22 Si 1.86799 * 120.00420 * 180.02562 * 20 18 17 23 23 H 1.48504 * 109.47130 * 359.97438 * 22 20 18 24 24 H 1.48498 * 109.47488 * 120.00018 * 22 20 18 25 25 H 1.48503 * 109.46917 * 240.00335 * 22 20 18 26 26 C 1.38227 * 120.00205 * 359.74956 * 6 5 4 27 27 C 1.38232 * 119.99860 * 90.00280 * 3 2 1 28 28 H 1.09004 * 109.46724 * 180.02562 * 1 2 3 29 29 H 1.09001 * 109.47194 * 299.99742 * 1 2 3 30 30 H 1.08992 * 109.47399 * 59.99914 * 1 2 3 31 31 H 1.09002 * 109.47398 * 120.00078 * 2 1 3 32 32 H 1.09001 * 109.47194 * 240.00258 * 2 1 3 33 33 H 1.08001 * 120.00330 * 359.97438 * 4 3 2 34 34 H 1.08001 * 119.99843 * 180.23314 * 5 4 3 35 35 H 1.09001 * 109.47290 * 59.99484 * 9 7 6 36 36 H 1.08992 * 109.47505 * 179.97438 * 9 7 6 37 37 H 1.09003 * 109.46818 * 300.00007 * 9 7 6 38 38 H 0.97001 * 119.99839 * 359.97438 * 12 10 7 39 39 H 1.08990 * 109.46753 * 299.99910 * 13 12 10 40 40 H 1.08996 * 109.46824 * 60.00021 * 13 12 10 41 41 H 1.09002 * 109.46780 * 59.99807 * 15 14 13 42 42 H 1.09005 * 109.47406 * 179.97438 * 15 14 13 43 43 H 1.08996 * 109.47193 * 300.00279 * 15 14 13 44 44 H 1.09001 * 109.47749 * 59.99886 * 16 14 13 45 45 H 1.09005 * 109.47291 * 180.02562 * 16 14 13 46 46 H 1.09001 * 109.47657 * 299.99541 * 16 14 13 47 47 H 1.08997 * 109.47497 * 300.00181 * 17 14 13 48 48 H 1.09000 * 109.47471 * 60.00190 * 17 14 13 49 49 H 0.96997 * 120.00226 * 179.97438 * 21 20 18 50 50 H 1.07996 * 120.00251 * 179.97438 * 26 6 5 51 51 H 1.07998 * 120.00407 * 0.02562 * 27 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 6 2.2680 2.0706 -1.1972 5 6 2.7242 3.3755 -1.1972 6 6 2.9545 4.0272 0.0000 7 6 3.4577 5.4477 -0.0001 8 1 3.5791 5.7902 1.0276 9 6 2.4505 6.3456 -0.7212 10 6 4.7853 5.5104 -0.7106 11 8 5.2744 4.5011 -1.1719 12 7 5.4290 6.6881 -0.8333 13 6 6.7198 6.7489 -1.5235 14 6 7.2305 8.1911 -1.5237 15 6 6.2235 9.0888 -2.2454 16 6 7.4003 8.6721 -0.0812 17 6 8.5789 8.2545 -2.2439 18 6 9.0817 9.6752 -2.2446 19 1 8.4982 10.4548 -1.7777 20 6 10.2867 9.9797 -2.8414 21 7 10.9972 9.0305 -3.4105 22 14 10.9103 11.7405 -2.8417 23 1 9.9322 12.6122 -2.1426 24 1 12.2184 11.8026 -2.1414 25 1 11.0759 12.2068 -4.2419 26 6 2.7238 3.3757 1.1971 27 6 2.2627 2.0725 1.1971 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3634 0.5138 0.8900 30 1 -0.3634 0.5138 -0.8899 31 1 1.8934 -0.5138 0.8900 32 1 1.8934 -0.5138 -0.8900 33 1 2.0926 1.5598 -2.1325 34 1 2.9047 3.8844 -2.1326 35 1 1.4902 6.3002 -0.2074 36 1 2.8142 7.3730 -0.7209 37 1 2.3291 6.0030 -1.7489 38 1 5.0376 7.4954 -0.4647 39 1 7.4370 6.1091 -1.0096 40 1 6.5987 6.4066 -2.5512 41 1 5.2631 9.0435 -1.7319 42 1 6.5872 10.1164 -2.2451 43 1 6.1025 8.7461 -3.2730 44 1 8.1178 8.0327 0.4331 45 1 7.7638 9.6998 -0.0813 46 1 6.4400 8.6269 0.4324 47 1 9.2961 7.6151 -1.7294 48 1 8.4584 7.9117 -3.2716 49 1 11.8448 9.2447 -3.8307 50 1 2.9042 3.8847 2.1324 51 1 2.0832 1.5632 2.1325 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000588177530.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:57:55 Heat of formation + Delta-G solvation = -68.335993 kcal Electronic energy + Delta-G solvation = -26344.469869 eV Core-core repulsion = 22820.419972 eV Total energy + Delta-G solvation = -3524.049897 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 317.210 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.39553 -40.05632 -38.62685 -35.98880 -35.26584 -34.09621 -33.20235 -31.78898 -29.52804 -29.03785 -27.95389 -27.67579 -25.82227 -24.94969 -23.71810 -23.57423 -21.76536 -20.91610 -19.78367 -18.38710 -17.98530 -17.50853 -16.79651 -16.48624 -16.41966 -16.13254 -15.78715 -15.22319 -15.09437 -14.71907 -14.63103 -14.56317 -14.35057 -14.30068 -13.97383 -13.94114 -13.81011 -13.31177 -13.28758 -12.91990 -12.87595 -12.69543 -12.60468 -12.48294 -12.34326 -12.28530 -12.21539 -12.00088 -11.94788 -11.63770 -11.61173 -11.53386 -11.11548 -10.88070 -10.66041 -10.52883 -10.03723 -9.74566 -9.39083 -8.14513 -6.22491 0.42848 0.56659 1.41644 1.42571 1.54457 1.68463 2.24653 2.44798 2.92167 3.19939 3.59336 3.79584 3.94259 3.96270 4.05122 4.08232 4.14785 4.21815 4.23405 4.29652 4.43338 4.53476 4.59741 4.69369 4.71062 4.72447 4.73989 4.79092 4.86626 4.94369 4.97180 5.07363 5.09829 5.11192 5.13172 5.18599 5.24137 5.28129 5.39449 5.41318 5.48074 5.50400 5.54202 5.55442 5.58307 5.73521 5.76403 5.80461 5.89776 6.16116 6.29864 6.63066 6.93265 7.31332 7.45428 8.98209 Molecular weight = 317.21amu Principal moments of inertia in cm(-1) A = 0.034492 B = 0.002159 C = 0.002113 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 811.592655 B =12963.509166 C =13248.809686 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.085 4.085 3 C -0.090 4.090 4 C -0.135 4.135 5 C -0.100 4.100 6 C -0.085 4.085 7 C -0.063 4.063 8 H 0.130 0.870 9 C -0.137 4.137 10 C 0.509 3.491 11 O -0.583 6.583 12 N -0.707 5.707 13 C 0.143 3.857 14 C -0.065 4.065 15 C -0.121 4.121 16 C -0.122 4.122 17 C 0.039 3.961 18 C -0.512 4.512 19 H 0.074 0.926 20 C -0.008 4.008 21 N -0.939 5.939 22 Si 0.960 3.040 23 H -0.255 1.255 24 H -0.285 1.285 25 H -0.285 1.285 26 C -0.116 4.116 27 C -0.128 4.128 28 H 0.069 0.931 29 H 0.056 0.944 30 H 0.049 0.951 31 H 0.080 0.920 32 H 0.071 0.929 33 H 0.125 0.875 34 H 0.104 0.896 35 H 0.087 0.913 36 H 0.081 0.919 37 H 0.050 0.950 38 H 0.413 0.587 39 H 0.041 0.959 40 H 0.042 0.958 41 H 0.072 0.928 42 H 0.056 0.944 43 H 0.035 0.965 44 H 0.035 0.965 45 H 0.056 0.944 46 H 0.072 0.928 47 H -0.016 1.016 48 H -0.016 1.016 49 H 0.259 0.741 50 H 0.143 0.857 51 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.634 -10.159 11.285 28.938 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.122 4.122 3 C -0.090 4.090 4 C -0.153 4.153 5 C -0.118 4.118 6 C -0.085 4.085 7 C -0.084 4.084 8 H 0.148 0.852 9 C -0.195 4.195 10 C 0.296 3.704 11 O -0.462 6.462 12 N -0.360 5.360 13 C 0.019 3.981 14 C -0.065 4.065 15 C -0.179 4.179 16 C -0.179 4.179 17 C 0.002 3.998 18 C -0.550 4.550 19 H 0.092 0.908 20 C -0.205 4.205 21 N -0.581 5.581 22 Si 0.786 3.214 23 H -0.179 1.179 24 H -0.211 1.211 25 H -0.211 1.211 26 C -0.134 4.134 27 C -0.146 4.146 28 H 0.088 0.912 29 H 0.075 0.925 30 H 0.069 0.931 31 H 0.099 0.901 32 H 0.089 0.911 33 H 0.143 0.857 34 H 0.122 0.878 35 H 0.105 0.895 36 H 0.100 0.900 37 H 0.069 0.931 38 H 0.252 0.748 39 H 0.060 0.940 40 H 0.060 0.940 41 H 0.091 0.909 42 H 0.075 0.925 43 H 0.054 0.946 44 H 0.054 0.946 45 H 0.075 0.925 46 H 0.091 0.909 47 H 0.002 0.998 48 H 0.002 0.998 49 H 0.068 0.932 50 H 0.160 0.840 51 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges -24.139 -10.878 10.869 28.621 hybrid contribution 1.248 0.877 -0.647 1.657 sum -22.891 -10.001 10.222 26.991 Atomic orbital electron populations 1.21712 0.93850 1.02390 1.01965 1.20587 0.96843 0.91444 1.03326 1.20171 0.98665 0.97166 0.92989 1.21161 1.00949 0.94781 0.98446 1.20951 0.97905 0.95307 0.97636 1.19488 1.00113 0.95150 0.93780 1.20338 0.91133 0.94420 1.02479 0.85179 1.21813 0.98720 0.98824 1.00111 1.21184 0.87185 0.82654 0.79361 1.90705 1.69146 1.36039 1.50329 1.45959 1.21438 1.10589 1.58014 1.21159 0.84240 0.97130 0.95587 1.20707 0.96228 0.92332 0.97250 1.21693 0.97477 0.99688 0.98994 1.21699 1.00936 1.01347 0.93914 1.18977 0.91393 0.96032 0.93424 1.21632 1.04146 0.94635 1.34551 0.90754 1.25990 0.97613 1.01343 0.95540 1.70137 1.14418 1.34505 1.39017 0.85462 0.78297 0.80067 0.77599 1.17869 1.21119 1.21129 1.21285 0.99232 0.95254 0.97581 1.21246 1.00273 0.94841 0.98217 0.91158 0.92460 0.93145 0.90135 0.91056 0.85727 0.87776 0.89459 0.89991 0.93134 0.74812 0.94016 0.93973 0.90892 0.92527 0.94561 0.94573 0.92512 0.90914 0.99781 0.99773 0.93216 0.83961 0.84101 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.64 9.89 71.98 0.71 -0.92 16 2 C -0.08 -1.19 6.07 29.85 0.18 -1.01 16 3 C -0.09 -1.74 5.13 -19.87 -0.10 -1.84 16 4 C -0.14 -3.05 9.70 22.27 0.22 -2.84 16 5 C -0.10 -2.51 7.93 22.27 0.18 -2.34 16 6 C -0.08 -1.91 4.40 -19.87 -0.09 -2.00 16 7 C -0.06 -1.21 2.90 -12.29 -0.04 -1.25 16 8 H 0.13 1.79 7.88 -2.39 -0.02 1.77 16 9 C -0.14 -2.01 8.90 71.98 0.64 -1.37 16 10 C 0.51 14.47 7.02 87.66 0.62 15.09 16 11 O -0.58 -22.42 15.11 -3.03 -0.05 -22.47 16 12 N -0.71 -18.91 4.85 -463.08 -2.25 -21.16 16 13 C 0.14 5.13 4.56 86.38 0.39 5.53 16 14 C -0.06 -2.42 0.54 -52.18 -0.03 -2.45 16 15 C -0.12 -3.97 8.05 71.98 0.58 -3.39 16 16 C -0.12 -4.00 8.05 71.98 0.58 -3.42 16 17 C 0.04 2.01 4.04 29.85 0.12 2.13 16 18 C -0.51 -27.37 7.65 25.60 0.20 -27.17 16 19 H 0.07 3.70 5.68 -2.91 -0.02 3.68 16 20 C -0.01 -0.46 5.46 84.65 0.46 0.00 16 21 N -0.94 -57.46 13.29 21.45 0.28 -57.18 16 22 Si 0.96 43.58 29.54 68.60 2.03 45.60 16 23 H -0.26 -10.73 7.11 99.48 0.71 -10.02 16 24 H -0.29 -12.85 7.11 99.48 0.71 -12.14 16 25 H -0.29 -12.86 7.11 99.48 0.71 -12.15 16 26 C -0.12 -2.22 9.67 22.27 0.22 -2.01 16 27 C -0.13 -2.33 9.70 22.27 0.22 -2.11 16 28 H 0.07 0.62 8.14 -2.39 -0.02 0.60 16 29 H 0.06 0.64 8.14 -2.39 -0.02 0.62 16 30 H 0.05 0.63 8.14 -2.39 -0.02 0.62 16 31 H 0.08 0.97 8.09 -2.39 -0.02 0.95 16 32 H 0.07 0.99 8.08 -2.39 -0.02 0.97 16 33 H 0.12 2.47 8.06 -2.91 -0.02 2.45 16 34 H 0.10 2.81 7.52 -2.91 -0.02 2.78 16 35 H 0.09 0.98 8.14 -2.39 -0.02 0.97 16 36 H 0.08 0.93 7.57 -2.39 -0.02 0.91 16 37 H 0.05 0.88 7.39 -2.39 -0.02 0.87 16 38 H 0.41 8.24 5.58 -92.71 -0.52 7.72 16 39 H 0.04 1.66 8.14 -2.39 -0.02 1.65 16 40 H 0.04 1.68 8.14 -2.39 -0.02 1.66 16 41 H 0.07 1.74 6.86 -2.39 -0.02 1.72 16 42 H 0.06 1.99 6.62 -2.38 -0.02 1.97 16 43 H 0.04 1.25 8.14 -2.39 -0.02 1.24 16 44 H 0.04 1.26 8.14 -2.39 -0.02 1.24 16 45 H 0.06 2.00 6.62 -2.38 -0.02 1.98 16 46 H 0.07 1.75 6.86 -2.39 -0.02 1.73 16 47 H -0.02 -0.93 8.14 -2.39 -0.02 -0.95 16 48 H -0.02 -0.92 8.14 -2.39 -0.02 -0.94 16 49 H 0.26 15.01 8.31 -92.71 -0.77 14.24 16 50 H 0.14 1.98 7.95 -2.91 -0.02 1.96 16 51 H 0.14 1.85 8.06 -2.91 -0.02 1.83 16 Total: -1.00 -72.12 402.30 5.44 -66.67 By element: Atomic # 1 Polarization: 19.54 SS G_CDS: 0.37 Total: 19.91 kcal Atomic # 6 Polarization: -36.44 SS G_CDS: 5.05 Total: -31.39 kcal Atomic # 7 Polarization: -76.37 SS G_CDS: -1.96 Total: -78.33 kcal Atomic # 8 Polarization: -22.42 SS G_CDS: -0.05 Total: -22.47 kcal Atomic # 14 Polarization: 43.58 SS G_CDS: 2.03 Total: 45.60 kcal Total: -72.12 5.44 -66.67 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000588177530.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.664 kcal (2) G-P(sol) polarization free energy of solvation -72.115 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.779 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.443 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.672 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.336 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds