Wall clock time and date at job start Tue Mar 31 2020 11:57:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.50699 * 109.47079 * 2 1 4 4 C 1.38233 * 120.00288 * 89.99753 * 3 2 1 5 5 C 1.38234 * 120.00158 * 180.02562 * 4 3 2 6 6 C 1.38235 * 120.00241 * 359.96287 * 5 4 3 7 7 C 1.50690 * 120.00119 * 180.02562 * 6 5 4 8 8 H 1.08998 * 109.47656 * 359.97438 * 7 6 5 9 9 C 1.53004 * 109.47278 * 119.99925 * 7 6 5 10 10 C 1.50706 * 109.47185 * 239.99639 * 7 6 5 11 11 O 1.21281 * 119.99699 * 359.97438 * 10 7 6 12 12 N 1.34773 * 120.00080 * 180.02562 * 10 7 6 13 13 C 1.46506 * 119.99969 * 180.02562 * 12 10 7 14 14 C 1.52998 * 109.47237 * 179.72043 * 13 12 10 15 15 C 1.52993 * 109.47254 * 300.00146 * 14 13 12 16 16 C 1.53008 * 109.47007 * 59.99821 * 14 13 12 17 17 C 1.52996 * 109.46929 * 179.97438 * 14 13 12 18 18 C 1.50709 * 109.47079 * 180.02562 * 17 14 13 19 19 H 1.08001 * 119.99331 * 0.02562 * 18 17 14 20 20 C 1.37869 * 120.00242 * 179.97438 * 18 17 14 21 21 N 1.31516 * 120.00295 * 179.97438 * 20 18 17 22 22 Si 1.86803 * 119.99886 * 0.02562 * 20 18 17 23 23 H 1.48491 * 109.47410 * 89.99542 * 22 20 18 24 24 H 1.48504 * 109.46876 * 209.99820 * 22 20 18 25 25 H 1.48506 * 109.47254 * 329.99302 * 22 20 18 26 26 C 1.38241 * 119.99588 * 0.27018 * 6 5 4 27 27 C 1.38236 * 119.99829 * 270.01933 * 3 2 1 28 28 H 1.09000 * 109.47261 * 179.97438 * 1 2 3 29 29 H 1.08995 * 109.47525 * 300.00239 * 1 2 3 30 30 H 1.09002 * 109.46988 * 60.00405 * 1 2 3 31 31 H 1.08995 * 109.47525 * 239.99761 * 2 1 3 32 32 H 1.09002 * 109.46988 * 119.99595 * 2 1 3 33 33 H 1.08002 * 119.99528 * 0.02562 * 4 3 2 34 34 H 1.07999 * 119.99731 * 179.97438 * 5 4 3 35 35 H 1.09001 * 109.47281 * 180.02562 * 9 7 6 36 36 H 1.09002 * 109.46837 * 299.99824 * 9 7 6 37 37 H 1.08993 * 109.47257 * 59.99708 * 9 7 6 38 38 H 0.97005 * 120.00161 * 359.72088 * 12 10 7 39 39 H 1.09001 * 109.46512 * 299.72412 * 13 12 10 40 40 H 1.08998 * 109.47174 * 59.71534 * 13 12 10 41 41 H 1.09002 * 109.47712 * 59.99463 * 15 14 13 42 42 H 1.08995 * 109.47426 * 180.02562 * 15 14 13 43 43 H 1.09002 * 109.47145 * 299.99770 * 15 14 13 44 44 H 1.09004 * 109.46786 * 59.99901 * 16 14 13 45 45 H 1.08995 * 109.46766 * 180.02562 * 16 14 13 46 46 H 1.09002 * 109.47164 * 300.00057 * 16 14 13 47 47 H 1.09000 * 109.47441 * 299.99910 * 17 14 13 48 48 H 1.08994 * 109.47235 * 60.00181 * 17 14 13 49 49 H 0.96994 * 119.99926 * 180.02562 * 21 20 18 50 50 H 1.08001 * 119.99546 * 179.73703 * 26 6 5 51 51 H 1.07996 * 120.00261 * 0.02562 * 27 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.2627 2.0725 1.1971 5 6 2.7229 3.3760 1.1971 6 6 2.9536 4.0276 -0.0001 7 6 3.4559 5.4483 -0.0001 8 1 3.5764 5.7912 1.0275 9 6 4.8039 5.5127 -0.7210 10 6 2.4634 6.3320 -0.7109 11 8 1.4484 5.8549 -1.1724 12 7 2.7043 7.6523 -0.8345 13 6 1.7392 8.5114 -1.5251 14 6 2.2462 9.9550 -1.5197 15 6 2.4117 10.4320 -0.0754 16 6 3.5957 10.0242 -2.2374 17 6 1.2386 10.8520 -2.2413 18 6 1.7382 12.2739 -2.2366 19 1 2.6805 12.5134 -1.7662 20 6 0.9931 13.2684 -2.8335 21 7 1.4289 14.5093 -2.8290 22 14 -0.6362 12.8538 -3.6477 23 1 -1.7316 12.9735 -2.6523 24 1 -0.8823 13.7945 -4.7701 25 1 -0.5900 11.4636 -4.1681 26 6 2.7186 3.3774 -1.1972 27 6 2.2623 2.0726 -1.1972 28 1 -0.3634 -1.0277 -0.0005 29 1 -0.3634 0.5138 0.8899 30 1 -0.3633 0.5138 -0.8900 31 1 1.8934 -0.5138 -0.8899 32 1 1.8933 -0.5138 0.8900 33 1 2.0830 1.5632 2.1324 34 1 2.9025 3.8852 2.1324 35 1 5.1674 6.5403 -0.7206 36 1 5.5217 4.8735 -0.2069 37 1 4.6831 5.1700 -1.7486 38 1 3.5145 8.0344 -0.4625 39 1 1.6213 8.1715 -2.5540 40 1 0.7778 8.4620 -1.0138 41 1 3.1297 9.7928 0.4384 42 1 2.7724 11.4605 -0.0716 43 1 1.4503 10.3826 0.4359 44 1 3.4777 9.6843 -3.2664 45 1 3.9570 11.0525 -2.2331 46 1 4.3137 9.3850 -1.7236 47 1 1.1211 10.5121 -3.2703 48 1 0.2771 10.8027 -1.7304 49 1 0.9044 15.2090 -3.2486 50 1 2.8948 3.8879 -2.1325 51 1 2.0816 1.5637 -2.1325 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000588177531.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:57:58 Heat of formation + Delta-G solvation = -48.676481 kcal Electronic energy + Delta-G solvation = -26443.967256 eV Core-core repulsion = 22920.769860 eV Total energy + Delta-G solvation = -3523.197396 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 317.210 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -40.40494 -39.10146 -37.26571 -35.19085 -33.76387 -32.74275 -31.96557 -31.02035 -28.77137 -27.82387 -26.57718 -26.39441 -24.96158 -23.36802 -22.87095 -22.20454 -20.86885 -19.87460 -18.27279 -17.05674 -16.76750 -16.55548 -15.72236 -15.68958 -15.05792 -14.93318 -14.22037 -14.17986 -13.91443 -13.80811 -13.75056 -13.44736 -13.38606 -13.27850 -12.98643 -12.73022 -12.55822 -12.29148 -12.27568 -11.99808 -11.79287 -11.65359 -11.36407 -11.25106 -11.13372 -11.01775 -10.95205 -10.92966 -10.62999 -10.49940 -9.98310 -9.84309 -9.73822 -9.41459 -9.00656 -8.95797 -8.78688 -8.61858 -8.54483 -6.05240 -4.02527 1.20767 1.35552 2.77078 3.30840 3.32174 3.38996 3.43093 3.74513 4.38045 4.44828 4.56852 4.61749 4.74486 4.87656 4.94222 5.03849 5.09275 5.11888 5.27341 5.28665 5.34300 5.37905 5.41468 5.48420 5.51923 5.60334 5.61675 5.62844 5.71651 5.86690 5.89826 5.97074 5.99951 6.09408 6.10798 6.18225 6.30129 6.32057 6.47764 6.50560 6.53266 6.57871 6.69183 6.89336 6.91471 6.99980 7.03672 7.19143 7.35548 7.67438 7.78906 8.38125 8.51889 8.98646 9.57521 11.07430 Molecular weight = 317.21amu Principal moments of inertia in cm(-1) A = 0.023168 B = 0.002405 C = 0.002272 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1208.267489 B =11638.550501 C =12321.052682 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.084 4.084 3 C -0.085 4.085 4 C -0.122 4.122 5 C -0.110 4.110 6 C -0.068 4.068 7 C -0.073 4.073 8 H 0.102 0.898 9 C -0.140 4.140 10 C 0.511 3.489 11 O -0.537 6.537 12 N -0.720 5.720 13 C 0.126 3.874 14 C -0.063 4.063 15 C -0.129 4.129 16 C -0.128 4.128 17 C -0.002 4.002 18 C -0.511 4.511 19 H 0.078 0.922 20 C 0.066 3.934 21 N -0.904 5.904 22 Si 0.875 3.125 23 H -0.278 1.278 24 H -0.289 1.289 25 H -0.265 1.265 26 C -0.079 4.079 27 C -0.120 4.120 28 H 0.056 0.944 29 H 0.056 0.944 30 H 0.056 0.944 31 H 0.069 0.931 32 H 0.069 0.931 33 H 0.119 0.881 34 H 0.120 0.880 35 H 0.066 0.934 36 H 0.068 0.932 37 H 0.063 0.937 38 H 0.399 0.601 39 H 0.063 0.937 40 H 0.062 0.938 41 H 0.031 0.969 42 H 0.072 0.928 43 H 0.047 0.953 44 H 0.047 0.953 45 H 0.072 0.928 46 H 0.031 0.969 47 H 0.018 0.982 48 H 0.013 0.987 49 H 0.262 0.738 50 H 0.119 0.881 51 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.967 -26.081 7.725 27.848 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.121 4.121 3 C -0.085 4.085 4 C -0.140 4.140 5 C -0.128 4.128 6 C -0.068 4.068 7 C -0.094 4.094 8 H 0.120 0.880 9 C -0.198 4.198 10 C 0.297 3.703 11 O -0.413 6.413 12 N -0.372 5.372 13 C 0.003 3.997 14 C -0.063 4.063 15 C -0.186 4.186 16 C -0.186 4.186 17 C -0.040 4.040 18 C -0.548 4.548 19 H 0.096 0.904 20 C -0.135 4.135 21 N -0.543 5.543 22 Si 0.702 3.298 23 H -0.204 1.204 24 H -0.215 1.215 25 H -0.190 1.190 26 C -0.097 4.097 27 C -0.138 4.138 28 H 0.075 0.925 29 H 0.075 0.925 30 H 0.076 0.924 31 H 0.088 0.912 32 H 0.088 0.912 33 H 0.137 0.863 34 H 0.138 0.862 35 H 0.085 0.915 36 H 0.087 0.913 37 H 0.082 0.918 38 H 0.234 0.766 39 H 0.081 0.919 40 H 0.081 0.919 41 H 0.050 0.950 42 H 0.091 0.909 43 H 0.066 0.934 44 H 0.066 0.934 45 H 0.091 0.909 46 H 0.050 0.950 47 H 0.036 0.964 48 H 0.032 0.968 49 H 0.072 0.928 50 H 0.137 0.863 51 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges 5.176 -26.226 7.315 27.715 hybrid contribution -0.641 0.291 -0.277 0.756 sum 4.535 -25.936 7.038 27.253 Atomic orbital electron populations 1.21752 0.94740 1.01524 1.02465 1.20527 0.96216 0.92779 1.02575 1.19866 0.99161 0.96204 0.93271 1.20899 1.00841 0.94899 0.97379 1.20969 0.99701 0.94943 0.97163 1.19288 1.00104 0.93869 0.93580 1.20308 0.95414 0.92244 1.01469 0.87987 1.21795 0.94350 1.02766 1.00890 1.20420 0.87144 0.82641 0.80141 1.90714 1.27874 1.74279 1.48453 1.46163 1.25152 1.07533 1.58376 1.21625 0.91560 0.89921 0.96564 1.20684 0.97300 0.91724 0.96603 1.21777 1.00273 1.01878 0.94704 1.21774 0.95319 1.02364 0.99107 1.19592 0.93803 0.95523 0.95086 1.21074 1.07644 0.89823 1.36297 0.90396 1.25003 0.97696 0.94973 0.95817 1.69899 1.38801 1.00341 1.45229 0.86858 0.84711 0.78675 0.79522 1.20383 1.21498 1.19003 1.20891 0.97224 0.93953 0.97635 1.20965 1.00504 0.94925 0.97425 0.92526 0.92533 0.92437 0.91187 0.91230 0.86338 0.86224 0.91548 0.91309 0.91803 0.76559 0.91911 0.91939 0.95011 0.90860 0.93427 0.93412 0.90876 0.95010 0.96387 0.96840 0.92795 0.86324 0.86342 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.10 9.89 37.16 0.37 -0.73 16 2 C -0.08 -0.63 6.06 -27.88 -0.17 -0.80 16 3 C -0.08 -0.84 5.13 -104.62 -0.54 -1.38 16 4 C -0.12 -1.20 9.70 -39.58 -0.38 -1.58 16 5 C -0.11 -1.14 9.67 -39.58 -0.38 -1.52 16 6 C -0.07 -0.78 4.40 -104.63 -0.46 -1.24 16 7 C -0.07 -0.76 2.90 -92.92 -0.27 -1.03 16 8 H 0.10 0.87 7.88 -51.93 -0.41 0.46 16 9 C -0.14 -1.18 8.90 37.16 0.33 -0.85 16 10 C 0.51 7.20 7.02 -10.98 -0.08 7.12 16 11 O -0.54 -9.70 15.09 5.56 0.08 -9.62 16 12 N -0.72 -9.75 4.85 -60.29 -0.29 -10.05 16 13 C 0.13 2.10 4.56 -4.04 -0.02 2.08 16 14 C -0.06 -1.13 0.54 -154.51 -0.08 -1.21 16 15 C -0.13 -2.20 8.05 37.15 0.30 -1.90 16 16 C -0.13 -2.17 8.05 37.16 0.30 -1.87 16 17 C 0.00 -0.05 3.11 -27.88 -0.09 -0.14 16 18 C -0.51 -13.59 8.20 -34.44 -0.28 -13.87 16 19 H 0.08 2.19 5.92 -52.49 -0.31 1.88 16 20 C 0.07 1.87 5.47 -17.82 -0.10 1.77 16 21 N -0.90 -27.13 13.96 55.43 0.77 -26.36 16 22 Si 0.87 21.53 27.47 -169.99 -4.67 16.86 16 23 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 24 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 25 H -0.27 -6.33 6.54 56.52 0.37 -5.96 16 26 C -0.08 -0.95 7.92 -39.58 -0.31 -1.26 16 27 C -0.12 -1.30 9.70 -39.58 -0.38 -1.69 16 28 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 29 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 30 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 31 H 0.07 0.47 8.09 -51.93 -0.42 0.05 16 32 H 0.07 0.45 8.09 -51.93 -0.42 0.03 16 33 H 0.12 0.92 8.06 -52.49 -0.42 0.49 16 34 H 0.12 1.00 7.95 -52.49 -0.42 0.58 16 35 H 0.07 0.49 7.57 -51.93 -0.39 0.10 16 36 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 37 H 0.06 0.58 7.40 -51.93 -0.38 0.19 16 38 H 0.40 4.52 5.59 -40.82 -0.23 4.29 16 39 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 40 H 0.06 1.11 8.14 -51.93 -0.42 0.68 16 41 H 0.03 0.43 6.86 -51.93 -0.36 0.08 16 42 H 0.07 1.41 6.62 -51.93 -0.34 1.06 16 43 H 0.05 0.82 8.14 -51.93 -0.42 0.39 16 44 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 45 H 0.07 1.40 6.62 -51.93 -0.34 1.05 16 46 H 0.03 0.43 6.86 -51.93 -0.36 0.07 16 47 H 0.02 0.42 7.20 -51.93 -0.37 0.04 16 48 H 0.01 0.31 7.57 -51.93 -0.39 -0.08 16 49 H 0.26 7.45 8.31 -40.82 -0.34 7.11 16 50 H 0.12 1.45 7.52 -52.49 -0.39 1.06 16 51 H 0.12 1.09 8.06 -52.49 -0.42 0.67 16 LS Contribution 398.70 15.07 6.01 6.01 Total: -1.00 -31.68 398.70 -9.28 -40.96 By element: Atomic # 1 Polarization: 11.23 SS G_CDS: -8.94 Total: 2.29 kcal Atomic # 6 Polarization: -17.85 SS G_CDS: -2.25 Total: -20.10 kcal Atomic # 7 Polarization: -36.88 SS G_CDS: 0.48 Total: -36.40 kcal Atomic # 8 Polarization: -9.70 SS G_CDS: 0.08 Total: -9.62 kcal Atomic # 14 Polarization: 21.53 SS G_CDS: -4.67 Total: 16.86 kcal Total LS contribution 6.01 Total: 6.01 kcal Total: -31.68 -9.28 -40.96 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000588177531.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.717 kcal (2) G-P(sol) polarization free energy of solvation -31.675 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.393 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.284 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.959 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.676 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds