Wall clock time and date at job start Tue Mar 31 2020 12:15:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52996 * 109.47237 * 2 1 4 4 C 1.52999 * 109.47237 * 179.97438 * 3 2 1 5 5 C 1.50708 * 109.47076 * 180.02562 * 4 3 2 6 6 C 1.38361 * 119.85196 * 270.25154 * 5 4 3 7 7 C 1.37955 * 120.14138 * 180.25817 * 6 5 4 8 8 C 1.39575 * 119.85263 * 359.49245 * 7 6 5 9 9 C 1.47848 * 120.14487 * 180.27853 * 8 7 6 10 10 O 1.21550 * 119.99883 * 359.97438 * 9 8 7 11 11 N 1.34779 * 120.00150 * 180.02562 * 9 8 7 12 12 C 1.46501 * 120.00008 * 179.97438 * 11 9 8 13 13 C 1.52996 * 109.47072 * 179.97438 * 12 11 9 14 14 C 1.53007 * 109.47237 * 300.00078 * 13 12 11 15 15 C 1.53003 * 109.47108 * 60.00050 * 13 12 11 16 16 C 1.52997 * 109.47040 * 180.02562 * 13 12 11 17 17 C 1.50708 * 109.47202 * 180.02562 * 16 13 12 18 18 H 1.08001 * 119.99553 * 359.97438 * 17 16 13 19 19 C 1.37874 * 120.00012 * 179.97438 * 17 16 13 20 20 N 1.31514 * 120.00070 * 359.97438 * 19 17 16 21 21 Si 1.86801 * 119.99920 * 179.97438 * 19 17 16 22 22 H 1.48498 * 109.47133 * 0.02562 * 21 19 17 23 23 H 1.48499 * 109.47199 * 120.00059 * 21 19 17 24 24 H 1.48493 * 109.47059 * 240.00204 * 21 19 17 25 25 C 1.39579 * 119.71401 * 0.25207 * 8 7 6 26 26 C 1.37958 * 119.84937 * 0.02562 * 25 8 7 27 27 H 1.08997 * 109.46927 * 180.02562 * 1 2 3 28 28 H 1.08999 * 109.46636 * 299.99806 * 1 2 3 29 29 H 1.08995 * 109.47176 * 60.00085 * 1 2 3 30 30 H 1.09004 * 109.47072 * 240.00028 * 2 1 3 31 31 H 1.09008 * 109.47356 * 120.00057 * 2 1 3 32 32 H 1.09004 * 109.47067 * 60.00025 * 3 2 1 33 33 H 1.08994 * 109.47476 * 300.00173 * 3 2 1 34 34 H 1.08997 * 109.47366 * 60.00289 * 4 3 2 35 35 H 1.09000 * 109.47611 * 300.00081 * 4 3 2 36 36 H 1.07998 * 119.92846 * 0.02562 * 6 5 4 37 37 H 1.08002 * 120.07573 * 179.77464 * 7 6 5 38 38 H 0.96996 * 119.99601 * 359.97438 * 11 9 8 39 39 H 1.08997 * 109.47252 * 300.00049 * 12 11 9 40 40 H 1.09007 * 109.46893 * 60.00137 * 12 11 9 41 41 H 1.09006 * 109.47149 * 59.99909 * 14 13 12 42 42 H 1.08996 * 109.47150 * 179.97438 * 14 13 12 43 43 H 1.08998 * 109.46941 * 300.00165 * 14 13 12 44 44 H 1.08997 * 109.47050 * 60.00035 * 15 13 12 45 45 H 1.08997 * 109.46729 * 180.02562 * 15 13 12 46 46 H 1.08997 * 109.47195 * 299.99728 * 15 13 12 47 47 H 1.09005 * 109.46818 * 299.99598 * 16 13 12 48 48 H 1.08993 * 109.47662 * 60.00361 * 16 13 12 49 49 H 0.97002 * 119.99545 * 180.02562 * 20 19 17 50 50 H 1.07997 * 120.07575 * 180.02562 * 25 8 7 51 51 H 1.08006 * 119.92205 * 179.97438 * 26 25 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 3.5700 1.4424 0.0006 5 6 4.0724 2.8633 0.0013 6 6 4.2975 3.5148 -1.1984 7 6 4.7623 4.8136 -1.2049 8 6 4.9955 5.4741 0.0024 9 6 5.4878 6.8682 0.0031 10 8 5.6909 7.4415 -1.0493 11 7 5.7125 7.5030 1.1706 12 6 6.2008 8.8842 1.1712 13 6 6.3702 9.3646 2.6139 14 6 5.0221 9.3000 3.3346 15 6 7.3777 8.4671 3.3353 16 6 6.8797 10.8073 2.6145 17 6 7.0471 11.2803 4.0356 18 1 6.8132 10.6182 4.8562 19 6 7.4990 12.5581 4.2881 20 7 7.7844 13.3641 3.2888 21 14 7.7059 13.1447 6.0495 22 1 7.3210 12.0553 6.9824 23 1 9.1240 13.5181 6.2836 24 1 6.8378 14.3266 6.2829 25 6 4.7613 4.8129 1.2092 26 6 4.3019 3.5121 1.2016 27 1 -0.3633 -1.0276 0.0005 28 1 -0.3632 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8899 30 1 1.8933 -0.5138 -0.8900 31 1 1.8934 -0.5139 0.8900 32 1 1.6767 1.9563 0.8900 33 1 1.6767 1.9563 -0.8899 34 1 3.9337 0.9286 -0.8891 35 1 3.9330 0.9288 0.8908 36 1 4.1124 3.0041 -2.1319 37 1 4.9411 5.3199 -2.1420 38 1 5.5508 7.0453 2.0104 39 1 7.1610 8.9303 0.6574 40 1 5.4828 9.5237 0.6577 41 1 4.6587 8.2723 3.3341 42 1 5.1429 9.6418 4.3625 43 1 4.3044 9.9394 2.8206 44 1 8.3381 8.5131 2.8219 45 1 7.4980 8.8091 4.3632 46 1 7.0143 7.4395 3.3349 47 1 7.8401 10.8536 2.1010 48 1 6.1617 11.4464 2.1008 49 1 8.1027 14.2631 3.4666 50 1 4.9393 5.3185 2.1468 51 1 4.1206 2.9992 2.1347 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000588178270.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:15:10 Heat of formation + Delta-G solvation = -57.373007 kcal Electronic energy + Delta-G solvation = -25736.735100 eV Core-core repulsion = 22213.160594 eV Total energy + Delta-G solvation = -3523.574506 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 317.210 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -40.28234 -38.83686 -37.08583 -36.03213 -33.74216 -32.69177 -32.04577 -31.10257 -29.14477 -27.13650 -26.52879 -26.32852 -24.77569 -23.06994 -22.78163 -21.94811 -21.37349 -20.13484 -18.71507 -17.43461 -16.42248 -16.20808 -15.77780 -15.52083 -15.09115 -14.86528 -14.75457 -14.46995 -14.44385 -13.81193 -13.67730 -13.55997 -13.26159 -13.09994 -12.99213 -12.77066 -12.69549 -12.18846 -12.07514 -11.94647 -11.74358 -11.55113 -11.24452 -11.17072 -11.09588 -11.03550 -10.93262 -10.84324 -10.65815 -10.41872 -10.25352 -9.89321 -9.86350 -9.19934 -9.18928 -8.99230 -8.92439 -8.67002 -8.36881 -6.00642 -4.01958 0.70428 1.17064 2.88234 3.29636 3.37187 3.38872 3.41799 3.76601 4.27705 4.43283 4.44608 4.61529 4.62625 4.70373 4.77850 4.87371 4.96444 5.14108 5.24558 5.25959 5.27164 5.34920 5.39738 5.47766 5.48632 5.57405 5.61316 5.66672 5.73316 5.74670 5.77687 5.83782 5.93846 6.09518 6.14991 6.17181 6.21745 6.31044 6.31947 6.37900 6.54284 6.61475 6.67596 6.75341 7.04450 7.06034 7.11270 7.63463 7.72753 7.75576 7.98095 8.37645 8.41664 9.02998 9.61250 11.10800 Molecular weight = 317.21amu Principal moments of inertia in cm(-1) A = 0.024881 B = 0.002048 C = 0.001953 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1125.080840 B =13666.647684 C =14329.960912 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.125 4.125 3 C -0.115 4.115 4 C -0.084 4.084 5 C -0.062 4.062 6 C -0.127 4.127 7 C -0.059 4.059 8 C -0.132 4.132 9 C 0.549 3.451 10 O -0.543 6.543 11 N -0.715 5.715 12 C 0.127 3.873 13 C -0.073 4.073 14 C -0.127 4.127 15 C -0.127 4.127 16 C 0.036 3.964 17 C -0.511 4.511 18 H 0.060 0.940 19 C 0.055 3.945 20 N -0.894 5.894 21 Si 0.889 3.111 22 H -0.273 1.273 23 H -0.285 1.285 24 H -0.285 1.285 25 C -0.084 4.084 26 C -0.125 4.125 27 H 0.053 0.947 28 H 0.054 0.946 29 H 0.054 0.946 30 H 0.061 0.939 31 H 0.061 0.939 32 H 0.065 0.935 33 H 0.064 0.936 34 H 0.073 0.927 35 H 0.074 0.926 36 H 0.126 0.874 37 H 0.136 0.864 38 H 0.397 0.603 39 H 0.065 0.935 40 H 0.065 0.935 41 H 0.027 0.973 42 H 0.068 0.932 43 H 0.048 0.952 44 H 0.048 0.952 45 H 0.068 0.932 46 H 0.027 0.973 47 H 0.019 0.981 48 H 0.019 0.981 49 H 0.259 0.741 50 H 0.126 0.874 51 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.869 -26.659 -5.405 29.293 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.163 4.163 3 C -0.153 4.153 4 C -0.121 4.121 5 C -0.063 4.063 6 C -0.145 4.145 7 C -0.078 4.078 8 C -0.136 4.136 9 C 0.336 3.664 10 O -0.422 6.422 11 N -0.367 5.367 12 C 0.005 3.995 13 C -0.074 4.074 14 C -0.185 4.185 15 C -0.185 4.185 16 C -0.002 4.002 17 C -0.549 4.549 18 H 0.078 0.922 19 C -0.146 4.146 20 N -0.533 5.533 21 Si 0.717 3.283 22 H -0.198 1.198 23 H -0.211 1.211 24 H -0.211 1.211 25 C -0.102 4.102 26 C -0.143 4.143 27 H 0.072 0.928 28 H 0.073 0.927 29 H 0.073 0.927 30 H 0.080 0.920 31 H 0.080 0.920 32 H 0.083 0.917 33 H 0.083 0.917 34 H 0.092 0.908 35 H 0.092 0.908 36 H 0.144 0.856 37 H 0.153 0.847 38 H 0.234 0.766 39 H 0.084 0.916 40 H 0.084 0.916 41 H 0.046 0.954 42 H 0.087 0.913 43 H 0.067 0.933 44 H 0.067 0.933 45 H 0.086 0.914 46 H 0.046 0.954 47 H 0.037 0.963 48 H 0.037 0.963 49 H 0.069 0.931 50 H 0.144 0.856 51 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -10.651 -26.035 -6.176 28.799 hybrid contribution 0.126 0.344 1.383 1.431 sum -10.526 -25.690 -4.793 28.174 Atomic orbital electron populations 1.21778 0.95813 1.01587 1.01961 1.21548 0.95970 0.96701 1.02039 1.21616 0.94069 0.96894 1.02707 1.20684 0.95846 0.92406 1.03151 1.20086 0.96894 0.96105 0.93178 1.21009 1.00962 0.94745 0.97770 1.21282 0.94711 0.93899 0.97878 1.20074 1.04425 0.94661 0.94396 1.18298 0.78053 0.85818 0.84211 1.90761 1.52453 1.67689 1.31283 1.46141 1.66705 1.15902 1.07942 1.21670 0.99227 0.79914 0.98710 1.20917 0.95678 0.99719 0.91039 1.21771 0.96207 0.98477 1.02019 1.21767 0.98469 0.96216 1.02014 1.19097 0.96271 0.87303 0.97509 1.21220 1.43651 0.97861 0.92181 0.92191 1.25020 0.95748 0.97020 0.96769 1.69978 1.45453 1.07423 1.30469 0.86586 0.77676 0.78739 0.85272 1.19813 1.21143 1.21141 1.21338 0.96939 0.94791 0.97174 1.20960 1.00874 0.94697 0.97797 0.92801 0.92686 0.92705 0.92003 0.91980 0.91664 0.91683 0.90800 0.90781 0.85556 0.84664 0.76622 0.91625 0.91635 0.95355 0.91348 0.93281 0.93278 0.91352 0.95351 0.96289 0.96288 0.93095 0.85589 0.85551 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.77 9.91 37.16 0.37 -0.40 16 2 C -0.13 -0.63 5.93 -26.73 -0.16 -0.78 16 3 C -0.12 -0.67 5.20 -26.73 -0.14 -0.81 16 4 C -0.08 -0.51 5.34 -27.88 -0.15 -0.65 16 5 C -0.06 -0.52 5.14 -104.53 -0.54 -1.06 16 6 C -0.13 -1.17 9.68 -39.64 -0.38 -1.55 16 7 C -0.06 -0.69 9.60 -39.19 -0.38 -1.06 16 8 C -0.13 -1.70 5.87 -104.97 -0.62 -2.32 16 9 C 0.55 8.79 7.77 -12.33 -0.10 8.70 16 10 O -0.54 -10.65 16.35 5.32 0.09 -10.56 16 11 N -0.72 -10.82 4.91 -61.25 -0.30 -11.12 16 12 C 0.13 2.29 4.56 -4.04 -0.02 2.27 16 13 C -0.07 -1.39 0.54 -154.51 -0.08 -1.47 16 14 C -0.13 -2.23 8.05 37.16 0.30 -1.93 16 15 C -0.13 -2.23 8.05 37.16 0.30 -1.93 16 16 C 0.04 0.87 4.04 -27.88 -0.11 0.76 16 17 C -0.51 -13.53 7.65 -34.44 -0.26 -13.79 16 18 H 0.06 1.53 5.68 -52.49 -0.30 1.23 16 19 C 0.06 1.54 5.46 -17.82 -0.10 1.44 16 20 N -0.89 -26.38 13.29 55.43 0.74 -25.65 16 21 Si 0.89 21.16 29.54 -169.99 -5.02 16.14 16 22 H -0.27 -6.32 7.11 56.52 0.40 -5.92 16 23 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 24 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 25 C -0.08 -0.87 9.54 -39.18 -0.37 -1.24 16 26 C -0.13 -1.10 9.68 -39.64 -0.38 -1.48 16 27 H 0.05 0.24 8.14 -51.93 -0.42 -0.18 16 28 H 0.05 0.28 8.14 -51.93 -0.42 -0.14 16 29 H 0.05 0.28 8.14 -51.93 -0.42 -0.15 16 30 H 0.06 0.29 8.14 -51.93 -0.42 -0.13 16 31 H 0.06 0.29 8.14 -51.92 -0.42 -0.13 16 32 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 33 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 34 H 0.07 0.40 8.08 -51.93 -0.42 -0.02 16 35 H 0.07 0.40 8.08 -51.93 -0.42 -0.02 16 36 H 0.13 0.89 8.06 -52.49 -0.42 0.47 16 37 H 0.14 1.62 7.65 -52.49 -0.40 1.21 16 38 H 0.40 5.07 4.20 -40.82 -0.17 4.90 16 39 H 0.07 1.26 8.14 -51.93 -0.42 0.83 16 40 H 0.07 1.25 8.14 -51.93 -0.42 0.83 16 41 H 0.03 0.40 6.86 -51.93 -0.36 0.04 16 42 H 0.07 1.28 6.62 -51.93 -0.34 0.94 16 43 H 0.05 0.88 8.14 -51.93 -0.42 0.46 16 44 H 0.05 0.88 8.14 -51.93 -0.42 0.46 16 45 H 0.07 1.28 6.62 -51.93 -0.34 0.94 16 46 H 0.03 0.40 6.86 -51.93 -0.36 0.04 16 47 H 0.02 0.50 8.14 -51.93 -0.42 0.08 16 48 H 0.02 0.50 8.14 -51.93 -0.42 0.08 16 49 H 0.26 7.27 8.31 -40.82 -0.34 6.93 16 50 H 0.13 1.11 6.41 -52.49 -0.34 0.78 16 51 H 0.13 0.84 8.06 -52.48 -0.42 0.42 16 LS Contribution 404.74 15.07 6.10 6.10 Total: -1.00 -31.13 404.74 -10.14 -41.27 By element: Atomic # 1 Polarization: 10.05 SS G_CDS: -8.92 Total: 1.13 kcal Atomic # 6 Polarization: -14.49 SS G_CDS: -2.82 Total: -17.31 kcal Atomic # 7 Polarization: -37.20 SS G_CDS: 0.44 Total: -36.76 kcal Atomic # 8 Polarization: -10.65 SS G_CDS: 0.09 Total: -10.56 kcal Atomic # 14 Polarization: 21.16 SS G_CDS: -5.02 Total: 16.14 kcal Total LS contribution 6.10 Total: 6.10 kcal Total: -31.13 -10.14 -41.27 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000588178270.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.101 kcal (2) G-P(sol) polarization free energy of solvation -31.127 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.229 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.144 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.272 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.373 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds