Wall clock time and date at job start Tue Mar 31 2020 12:15:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52996 * 109.47237 * 2 1 4 4 C 1.52999 * 109.47237 * 179.97438 * 3 2 1 5 5 C 1.50708 * 109.47076 * 180.02562 * 4 3 2 6 6 C 1.38361 * 119.85196 * 270.25154 * 5 4 3 7 7 C 1.37955 * 120.14138 * 180.25817 * 6 5 4 8 8 C 1.39575 * 119.85263 * 359.49245 * 7 6 5 9 9 C 1.47848 * 120.14487 * 180.27853 * 8 7 6 10 10 O 1.21550 * 119.99883 * 359.97438 * 9 8 7 11 11 N 1.34779 * 120.00150 * 180.02562 * 9 8 7 12 12 C 1.46501 * 120.00008 * 179.97438 * 11 9 8 13 13 C 1.52996 * 109.47072 * 179.97438 * 12 11 9 14 14 C 1.53007 * 109.47237 * 300.00078 * 13 12 11 15 15 C 1.53003 * 109.47108 * 60.00050 * 13 12 11 16 16 C 1.52997 * 109.47040 * 180.02562 * 13 12 11 17 17 C 1.50708 * 109.47202 * 180.02562 * 16 13 12 18 18 H 1.08001 * 119.99553 * 359.97438 * 17 16 13 19 19 C 1.37874 * 120.00012 * 179.97438 * 17 16 13 20 20 N 1.31514 * 120.00070 * 359.97438 * 19 17 16 21 21 Si 1.86801 * 119.99920 * 179.97438 * 19 17 16 22 22 H 1.48498 * 109.47133 * 0.02562 * 21 19 17 23 23 H 1.48499 * 109.47199 * 120.00059 * 21 19 17 24 24 H 1.48493 * 109.47059 * 240.00204 * 21 19 17 25 25 C 1.39579 * 119.71401 * 0.25207 * 8 7 6 26 26 C 1.37958 * 119.84937 * 0.02562 * 25 8 7 27 27 H 1.08997 * 109.46927 * 180.02562 * 1 2 3 28 28 H 1.08999 * 109.46636 * 299.99806 * 1 2 3 29 29 H 1.08995 * 109.47176 * 60.00085 * 1 2 3 30 30 H 1.09004 * 109.47072 * 240.00028 * 2 1 3 31 31 H 1.09008 * 109.47356 * 120.00057 * 2 1 3 32 32 H 1.09004 * 109.47067 * 60.00025 * 3 2 1 33 33 H 1.08994 * 109.47476 * 300.00173 * 3 2 1 34 34 H 1.08997 * 109.47366 * 60.00289 * 4 3 2 35 35 H 1.09000 * 109.47611 * 300.00081 * 4 3 2 36 36 H 1.07998 * 119.92846 * 0.02562 * 6 5 4 37 37 H 1.08002 * 120.07573 * 179.77464 * 7 6 5 38 38 H 0.96996 * 119.99601 * 359.97438 * 11 9 8 39 39 H 1.08997 * 109.47252 * 300.00049 * 12 11 9 40 40 H 1.09007 * 109.46893 * 60.00137 * 12 11 9 41 41 H 1.09006 * 109.47149 * 59.99909 * 14 13 12 42 42 H 1.08996 * 109.47150 * 179.97438 * 14 13 12 43 43 H 1.08998 * 109.46941 * 300.00165 * 14 13 12 44 44 H 1.08997 * 109.47050 * 60.00035 * 15 13 12 45 45 H 1.08997 * 109.46729 * 180.02562 * 15 13 12 46 46 H 1.08997 * 109.47195 * 299.99728 * 15 13 12 47 47 H 1.09005 * 109.46818 * 299.99598 * 16 13 12 48 48 H 1.08993 * 109.47662 * 60.00361 * 16 13 12 49 49 H 0.97002 * 119.99545 * 180.02562 * 20 19 17 50 50 H 1.07997 * 120.07575 * 180.02562 * 25 8 7 51 51 H 1.08006 * 119.92205 * 179.97438 * 26 25 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 3.5700 1.4424 0.0006 5 6 4.0724 2.8633 0.0013 6 6 4.2975 3.5148 -1.1984 7 6 4.7623 4.8136 -1.2049 8 6 4.9955 5.4741 0.0024 9 6 5.4878 6.8682 0.0031 10 8 5.6909 7.4415 -1.0493 11 7 5.7125 7.5030 1.1706 12 6 6.2008 8.8842 1.1712 13 6 6.3702 9.3646 2.6139 14 6 5.0221 9.3000 3.3346 15 6 7.3777 8.4671 3.3353 16 6 6.8797 10.8073 2.6145 17 6 7.0471 11.2803 4.0356 18 1 6.8132 10.6182 4.8562 19 6 7.4990 12.5581 4.2881 20 7 7.7844 13.3641 3.2888 21 14 7.7059 13.1447 6.0495 22 1 7.3210 12.0553 6.9824 23 1 9.1240 13.5181 6.2836 24 1 6.8378 14.3266 6.2829 25 6 4.7613 4.8129 1.2092 26 6 4.3019 3.5121 1.2016 27 1 -0.3633 -1.0276 0.0005 28 1 -0.3632 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8899 30 1 1.8933 -0.5138 -0.8900 31 1 1.8934 -0.5139 0.8900 32 1 1.6767 1.9563 0.8900 33 1 1.6767 1.9563 -0.8899 34 1 3.9337 0.9286 -0.8891 35 1 3.9330 0.9288 0.8908 36 1 4.1124 3.0041 -2.1319 37 1 4.9411 5.3199 -2.1420 38 1 5.5508 7.0453 2.0104 39 1 7.1610 8.9303 0.6574 40 1 5.4828 9.5237 0.6577 41 1 4.6587 8.2723 3.3341 42 1 5.1429 9.6418 4.3625 43 1 4.3044 9.9394 2.8206 44 1 8.3381 8.5131 2.8219 45 1 7.4980 8.8091 4.3632 46 1 7.0143 7.4395 3.3349 47 1 7.8401 10.8536 2.1010 48 1 6.1617 11.4464 2.1008 49 1 8.1027 14.2631 3.4666 50 1 4.9393 5.3185 2.1468 51 1 4.1206 2.9992 2.1347 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000588178270.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:15:09 Heat of formation + Delta-G solvation = -72.825597 kcal Electronic energy + Delta-G solvation = -25737.405175 eV Core-core repulsion = 22213.160594 eV Total energy + Delta-G solvation = -3524.244580 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 317.210 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.36264 -39.85122 -38.59287 -36.56473 -35.33825 -34.09054 -33.17587 -31.90077 -29.89368 -29.02994 -27.97773 -27.64293 -25.68612 -24.69570 -23.55723 -22.85517 -21.86359 -21.20890 -20.10095 -18.73843 -18.36084 -17.29533 -16.55609 -16.45896 -16.37121 -16.29108 -15.84997 -15.53025 -15.21696 -14.90449 -14.85520 -14.64138 -14.49391 -14.16092 -13.95113 -13.90160 -13.72077 -13.56863 -13.37698 -12.90080 -12.70354 -12.63269 -12.57119 -12.35747 -12.27931 -12.21824 -11.99734 -11.96098 -11.83260 -11.61665 -11.55849 -11.34580 -11.24270 -10.92971 -10.81450 -10.52438 -10.20024 -9.94949 -9.64501 -8.14106 -6.22036 -0.15833 0.42315 1.42101 1.43042 1.54877 1.82545 2.14373 2.44931 2.86640 3.20481 3.62832 3.81414 3.84769 3.96953 4.02032 4.05885 4.14669 4.20230 4.21569 4.37576 4.40304 4.45240 4.63353 4.66547 4.69372 4.73054 4.78218 4.86836 4.94153 4.94583 4.97628 5.06010 5.07812 5.10383 5.11186 5.21579 5.31954 5.35004 5.36367 5.40506 5.41154 5.45119 5.49290 5.51813 5.54900 5.56282 5.65693 5.79046 5.89533 5.95267 6.29688 6.52107 6.93269 7.16651 7.45805 8.98610 Molecular weight = 317.21amu Principal moments of inertia in cm(-1) A = 0.024881 B = 0.002048 C = 0.001953 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1125.080840 B =13666.647684 C =14329.960912 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.123 4.123 3 C -0.113 4.113 4 C -0.080 4.080 5 C -0.054 4.054 6 C -0.127 4.127 7 C -0.074 4.074 8 C -0.157 4.157 9 C 0.548 3.452 10 O -0.590 6.590 11 N -0.702 5.702 12 C 0.140 3.860 13 C -0.065 4.065 14 C -0.123 4.123 15 C -0.122 4.122 16 C 0.039 3.961 17 C -0.512 4.512 18 H 0.075 0.925 19 C -0.007 4.007 20 N -0.939 5.939 21 Si 0.960 3.040 22 H -0.255 1.255 23 H -0.285 1.285 24 H -0.285 1.285 25 C -0.082 4.082 26 C -0.124 4.124 27 H 0.057 0.943 28 H 0.052 0.948 29 H 0.050 0.950 30 H 0.065 0.935 31 H 0.068 0.932 32 H 0.061 0.939 33 H 0.057 0.943 34 H 0.083 0.917 35 H 0.088 0.912 36 H 0.147 0.853 37 H 0.120 0.880 38 H 0.412 0.588 39 H 0.047 0.953 40 H 0.047 0.953 41 H 0.069 0.931 42 H 0.059 0.941 43 H 0.037 0.963 44 H 0.037 0.963 45 H 0.058 0.942 46 H 0.069 0.931 47 H -0.014 1.014 48 H -0.014 1.014 49 H 0.259 0.741 50 H 0.144 0.856 51 H 0.156 0.844 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.997 -30.270 -3.140 32.712 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.160 4.160 3 C -0.150 4.150 4 C -0.117 4.117 5 C -0.054 4.054 6 C -0.145 4.145 7 C -0.093 4.093 8 C -0.160 4.160 9 C 0.337 3.663 10 O -0.472 6.472 11 N -0.355 5.355 12 C 0.016 3.984 13 C -0.065 4.065 14 C -0.180 4.180 15 C -0.180 4.180 16 C 0.002 3.998 17 C -0.550 4.550 18 H 0.093 0.907 19 C -0.204 4.204 20 N -0.580 5.580 21 Si 0.786 3.214 22 H -0.179 1.179 23 H -0.211 1.211 24 H -0.211 1.211 25 C -0.100 4.100 26 C -0.141 4.141 27 H 0.077 0.923 28 H 0.071 0.929 29 H 0.069 0.931 30 H 0.084 0.916 31 H 0.086 0.914 32 H 0.080 0.920 33 H 0.076 0.924 34 H 0.102 0.898 35 H 0.107 0.893 36 H 0.164 0.836 37 H 0.138 0.862 38 H 0.251 0.749 39 H 0.065 0.935 40 H 0.065 0.935 41 H 0.088 0.912 42 H 0.078 0.922 43 H 0.056 0.944 44 H 0.056 0.944 45 H 0.078 0.922 46 H 0.088 0.912 47 H 0.004 0.996 48 H 0.004 0.996 49 H 0.068 0.932 50 H 0.161 0.839 51 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges -11.795 -29.686 -3.875 32.178 hybrid contribution 0.432 1.372 0.599 1.558 sum -11.363 -28.314 -3.276 30.685 Atomic orbital electron populations 1.21798 0.96052 1.01828 1.01697 1.21531 0.95753 0.96191 1.02556 1.21579 0.93865 0.97343 1.02225 1.20733 0.95790 0.90812 1.04414 1.20444 0.95094 0.97138 0.92709 1.21229 1.00215 0.93706 0.99325 1.21315 0.95787 0.95098 0.97141 1.19869 1.07123 0.92980 0.96056 1.18873 0.76977 0.87016 0.83414 1.90731 1.54531 1.69072 1.32884 1.45882 1.66386 1.14511 1.08703 1.21272 0.97961 0.81503 0.97659 1.20721 0.97175 0.96514 0.92121 1.21709 0.94710 1.00833 1.00726 1.21705 0.97529 0.98012 1.00718 1.18978 0.93929 0.90711 0.96207 1.21626 1.42292 0.97965 0.93162 0.90748 1.25973 0.95748 0.97504 1.01142 1.70136 1.47017 1.07840 1.33002 0.85462 0.77366 0.78436 0.80168 1.17901 1.21121 1.21122 1.21530 0.96372 0.95473 0.96656 1.21316 0.99667 0.94020 0.99140 0.92347 0.92902 0.93054 0.91584 0.91358 0.91991 0.92398 0.89821 0.89337 0.83559 0.86159 0.74866 0.93469 0.93488 0.91246 0.92244 0.94415 0.94404 0.92250 0.91240 0.99570 0.99572 0.93212 0.83871 0.82671 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.26 9.91 71.98 0.71 -0.54 16 2 C -0.12 -0.88 5.93 30.59 0.18 -0.70 16 3 C -0.11 -0.97 5.20 30.59 0.16 -0.82 16 4 C -0.08 -0.67 5.34 29.85 0.16 -0.51 16 5 C -0.05 -0.73 5.14 -19.80 -0.10 -0.83 16 6 C -0.13 -2.10 9.68 22.23 0.22 -1.88 16 7 C -0.07 -1.72 9.60 22.53 0.22 -1.50 16 8 C -0.16 -3.90 5.87 -20.09 -0.12 -4.02 16 9 C 0.55 17.72 7.77 86.79 0.67 18.39 16 10 O -0.59 -24.29 16.35 -3.87 -0.06 -24.36 16 11 N -0.70 -20.74 4.91 -465.97 -2.29 -23.03 16 12 C 0.14 5.19 4.56 86.38 0.39 5.59 16 13 C -0.06 -2.47 0.54 -52.18 -0.03 -2.50 16 14 C -0.12 -4.11 8.05 71.98 0.58 -3.53 16 15 C -0.12 -4.10 8.05 71.98 0.58 -3.53 16 16 C 0.04 2.02 4.04 29.85 0.12 2.14 16 17 C -0.51 -27.44 7.65 25.60 0.20 -27.25 16 18 H 0.07 3.71 5.68 -2.91 -0.02 3.69 16 19 C -0.01 -0.39 5.46 84.65 0.46 0.07 16 20 N -0.94 -57.34 13.29 21.45 0.28 -57.05 16 21 Si 0.96 43.58 29.54 68.60 2.03 45.61 16 22 H -0.26 -10.75 7.11 99.48 0.71 -10.04 16 23 H -0.29 -12.85 7.11 99.48 0.71 -12.15 16 24 H -0.29 -12.85 7.11 99.48 0.71 -12.15 16 25 C -0.08 -1.46 9.54 22.53 0.21 -1.24 16 26 C -0.12 -1.70 9.68 22.23 0.22 -1.48 16 27 H 0.06 0.41 8.14 -2.39 -0.02 0.39 16 28 H 0.05 0.44 8.14 -2.39 -0.02 0.42 16 29 H 0.05 0.44 8.14 -2.39 -0.02 0.42 16 30 H 0.07 0.43 8.14 -2.39 -0.02 0.41 16 31 H 0.07 0.42 8.14 -2.38 -0.02 0.40 16 32 H 0.06 0.59 8.14 -2.39 -0.02 0.57 16 33 H 0.06 0.59 8.14 -2.39 -0.02 0.57 16 34 H 0.08 0.58 8.08 -2.39 -0.02 0.56 16 35 H 0.09 0.54 8.08 -2.39 -0.02 0.52 16 36 H 0.15 1.75 8.06 -2.91 -0.02 1.73 16 37 H 0.12 3.05 7.65 -2.91 -0.02 3.02 16 38 H 0.41 9.40 4.20 -92.71 -0.39 9.01 16 39 H 0.05 1.91 8.14 -2.39 -0.02 1.89 16 40 H 0.05 1.90 8.14 -2.38 -0.02 1.89 16 41 H 0.07 1.75 6.86 -2.38 -0.02 1.73 16 42 H 0.06 2.11 6.62 -2.39 -0.02 2.10 16 43 H 0.04 1.33 8.14 -2.39 -0.02 1.31 16 44 H 0.04 1.34 8.14 -2.39 -0.02 1.32 16 45 H 0.06 2.11 6.62 -2.39 -0.02 2.09 16 46 H 0.07 1.75 6.86 -2.39 -0.02 1.73 16 47 H -0.01 -0.80 8.14 -2.38 -0.02 -0.82 16 48 H -0.01 -0.81 8.14 -2.39 -0.02 -0.82 16 49 H 0.26 15.00 8.31 -92.71 -0.77 14.22 16 50 H 0.14 1.96 6.41 -2.91 -0.02 1.94 16 51 H 0.16 1.26 8.06 -2.91 -0.02 1.24 16 Total: -1.00 -71.08 404.74 5.29 -65.78 By element: Atomic # 1 Polarization: 16.69 SS G_CDS: 0.50 Total: 17.19 kcal Atomic # 6 Polarization: -28.98 SS G_CDS: 4.83 Total: -24.15 kcal Atomic # 7 Polarization: -78.08 SS G_CDS: -2.00 Total: -80.08 kcal Atomic # 8 Polarization: -24.29 SS G_CDS: -0.06 Total: -24.36 kcal Atomic # 14 Polarization: 43.58 SS G_CDS: 2.03 Total: 45.61 kcal Total: -71.08 5.29 -65.78 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000588178270.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.042 kcal (2) G-P(sol) polarization free energy of solvation -71.078 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.120 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.295 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.784 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.826 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds