Wall clock time and date at job start Tue Mar 31 2020 12:06:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52997 * 109.47060 * 2 1 4 4 C 1.50699 * 109.47083 * 240.00115 * 2 1 3 5 5 C 1.38237 * 120.00001 * 59.72567 * 4 2 1 6 6 C 1.38237 * 120.00167 * 179.74562 * 5 4 2 7 7 C 1.38233 * 119.99638 * 0.52647 * 6 5 4 8 8 C 1.50698 * 119.99937 * 179.77198 * 7 6 5 9 9 N 1.46507 * 109.46838 * 269.97709 * 8 7 6 10 10 C 1.46499 * 119.99880 * 90.00187 * 9 8 7 11 11 C 1.34776 * 119.99782 * 269.99649 * 9 8 7 12 12 O 1.21283 * 120.00122 * 0.02562 * 11 9 8 13 13 C 1.50700 * 119.99663 * 180.02562 * 11 9 8 14 14 C 1.53002 * 109.47198 * 180.02562 * 13 11 9 15 15 C 1.52993 * 109.47321 * 179.97438 * 14 13 11 16 16 C 1.53003 * 109.47052 * 179.97438 * 15 14 13 17 17 C 1.50705 * 109.47158 * 179.97438 * 16 15 14 18 18 H 1.07996 * 119.99821 * 0.02562 * 17 16 15 19 19 C 1.37876 * 120.00055 * 180.02562 * 17 16 15 20 20 N 1.31514 * 120.00039 * 0.02562 * 19 17 16 21 21 Si 1.86795 * 120.00066 * 180.02562 * 19 17 16 22 22 H 1.48493 * 109.47289 * 89.99970 * 21 19 17 23 23 H 1.48499 * 109.47247 * 210.00305 * 21 19 17 24 24 H 1.48512 * 109.46875 * 329.99998 * 21 19 17 25 25 C 1.38238 * 120.00258 * 359.74632 * 7 6 5 26 26 C 1.38233 * 119.99957 * 239.99778 * 4 2 1 27 27 H 1.08992 * 109.47399 * 59.99823 * 1 2 3 28 28 H 1.09004 * 109.46724 * 180.02562 * 1 2 3 29 29 H 1.09001 * 109.47194 * 299.99650 * 1 2 3 30 30 H 1.09002 * 109.47398 * 120.00169 * 2 1 3 31 31 H 1.09002 * 109.47153 * 300.00319 * 3 2 1 32 32 H 1.08998 * 109.47533 * 59.99948 * 3 2 1 33 33 H 1.08996 * 109.47853 * 180.02562 * 3 2 1 34 34 H 1.08007 * 119.99774 * 359.97438 * 5 4 2 35 35 H 1.08001 * 120.00069 * 180.29825 * 6 5 4 36 36 H 1.09001 * 109.47385 * 29.97444 * 8 7 6 37 37 H 1.09000 * 109.47497 * 149.97580 * 8 7 6 38 38 H 1.09003 * 109.47171 * 89.99987 * 10 9 8 39 39 H 1.09000 * 109.46734 * 209.99716 * 10 9 8 40 40 H 1.09003 * 109.47165 * 329.99786 * 10 9 8 41 41 H 1.09006 * 109.47087 * 299.99646 * 13 11 9 42 42 H 1.08998 * 109.47599 * 60.00438 * 13 11 9 43 43 H 1.09001 * 109.46919 * 300.00299 * 14 13 11 44 44 H 1.09005 * 109.47051 * 59.99501 * 14 13 11 45 45 H 1.08998 * 109.47651 * 299.99670 * 15 14 13 46 46 H 1.08998 * 109.47228 * 60.00306 * 15 14 13 47 47 H 1.08995 * 109.47734 * 300.00499 * 16 15 14 48 48 H 1.09005 * 109.46980 * 60.00723 * 16 15 14 49 49 H 0.97000 * 119.99925 * 179.97438 * 20 19 17 50 50 H 1.08003 * 120.00252 * 180.02562 * 25 7 6 51 51 H 1.07991 * 120.00142 * 0.02562 * 26 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7104 -1.2305 5 6 1.6937 -0.2414 -2.4860 6 6 2.1588 -0.8899 -3.6147 7 6 2.9535 -2.0138 -3.4879 8 6 3.4563 -2.7238 -4.7184 9 7 2.4917 -3.7518 -5.1174 10 6 1.4112 -3.4201 -6.0493 11 6 2.5986 -5.0027 -4.6270 12 8 3.4929 -5.2772 -3.8552 13 6 1.6067 -6.0602 -5.0379 14 6 1.9507 -7.3795 -4.3435 15 6 0.9434 -8.4530 -4.7601 16 6 1.2879 -9.7723 -4.0661 17 6 0.2952 -10.8296 -4.4760 18 1 -0.5013 -10.5851 -5.1631 19 6 0.4040 -12.1091 -3.9739 20 7 1.3737 -12.4067 -3.1368 21 14 -0.8259 -13.4198 -4.4824 22 1 -0.3303 -14.1200 -5.6945 23 1 -0.9913 -14.3986 -3.3780 24 1 -2.1341 -12.7825 -4.7791 25 6 3.2875 -2.4861 -2.2324 26 6 2.8271 -1.8343 -1.1037 27 1 -0.3634 0.5138 -0.8899 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3634 0.5138 0.8900 30 1 1.8934 -0.5139 0.8900 31 1 1.6766 1.9563 -0.8900 32 1 1.6767 1.9564 0.8899 33 1 3.1299 1.4426 -0.0005 34 1 1.0688 0.6339 -2.5850 35 1 1.8982 -0.5206 -4.5956 36 1 3.5773 -2.0050 -5.5288 37 1 4.4167 -3.1914 -4.5012 38 1 1.7461 -3.5965 -7.0715 39 1 0.5442 -4.0460 -5.8379 40 1 1.1394 -2.3710 -5.9320 41 1 0.6029 -5.7489 -4.7487 42 1 1.6477 -6.1967 -6.1185 43 1 2.9546 -7.6910 -4.6322 44 1 1.9095 -7.2428 -3.2628 45 1 -0.0603 -8.1413 -4.4710 46 1 0.9843 -8.5898 -5.8407 47 1 2.2914 -10.0839 -4.3555 48 1 1.2472 -9.6359 -2.9854 49 1 1.4501 -13.3067 -2.7832 50 1 3.9088 -3.3640 -2.1333 51 1 3.0877 -2.2035 -0.1228 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000588254388.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:06:40 Heat of formation + Delta-G solvation = -67.055317 kcal Electronic energy + Delta-G solvation = -25743.454088 eV Core-core repulsion = 22219.459726 eV Total energy + Delta-G solvation = -3523.994362 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 317.210 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.22568 -40.27004 -37.28089 -36.57756 -35.88805 -34.62528 -32.28076 -31.84148 -31.07946 -28.17464 -27.98683 -27.74535 -26.33980 -24.21261 -23.65983 -22.89672 -21.74451 -20.84386 -20.04542 -18.44108 -17.85265 -17.63410 -17.17809 -16.81349 -16.47416 -16.37224 -16.02957 -15.58443 -14.88930 -14.72328 -14.61261 -14.53359 -14.38590 -14.28882 -14.00520 -13.61538 -13.58378 -13.42031 -13.25643 -13.22331 -12.94860 -12.87482 -12.79598 -12.77496 -12.33658 -12.14930 -12.14201 -12.08021 -12.03658 -11.63987 -11.51532 -11.39396 -11.34616 -11.14323 -10.76203 -10.55781 -9.82975 -9.71011 -9.46405 -8.19133 -6.31535 0.32659 0.49328 1.39736 1.42398 1.53441 1.65427 2.09860 2.41549 2.89460 3.13322 3.62683 3.70491 3.83551 3.95840 4.01539 4.06575 4.11087 4.14994 4.31052 4.34074 4.35606 4.51318 4.53592 4.62231 4.63670 4.66566 4.73237 4.79338 4.80676 4.83564 4.86109 4.95275 4.98485 5.01287 5.07706 5.14971 5.17452 5.19795 5.31168 5.32149 5.35593 5.38079 5.52171 5.54361 5.56634 5.69232 5.74111 5.76612 5.86904 6.10480 6.24417 6.38132 6.86741 7.21137 7.37988 8.93164 Molecular weight = 317.21amu Principal moments of inertia in cm(-1) A = 0.016489 B = 0.002120 C = 0.001995 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1697.677214 B =13205.410212 C =14032.917394 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.060 4.060 3 C -0.139 4.139 4 C -0.076 4.076 5 C -0.120 4.120 6 C -0.099 4.099 7 C -0.119 4.119 8 C 0.154 3.846 9 N -0.611 5.611 10 C 0.069 3.931 11 C 0.506 3.494 12 O -0.583 6.583 13 C -0.126 4.126 14 C -0.094 4.094 15 C -0.095 4.095 16 C 0.019 3.981 17 C -0.541 4.541 18 H 0.067 0.933 19 C -0.009 4.009 20 N -0.938 5.938 21 Si 0.971 3.029 22 H -0.271 1.271 23 H -0.284 1.284 24 H -0.259 1.259 25 C -0.115 4.115 26 C -0.138 4.138 27 H 0.065 0.935 28 H 0.043 0.957 29 H 0.069 0.931 30 H 0.071 0.929 31 H 0.064 0.936 32 H 0.068 0.932 33 H 0.049 0.951 34 H 0.144 0.856 35 H 0.151 0.849 36 H 0.119 0.881 37 H 0.065 0.935 38 H 0.076 0.924 39 H 0.081 0.919 40 H 0.092 0.908 41 H 0.112 0.888 42 H 0.117 0.883 43 H 0.042 0.958 44 H 0.038 0.962 45 H 0.059 0.941 46 H 0.062 0.938 47 H -0.016 1.016 48 H -0.017 1.017 49 H 0.263 0.737 50 H 0.099 0.901 51 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.970 33.825 -2.840 34.001 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.078 4.078 3 C -0.196 4.196 4 C -0.077 4.077 5 C -0.138 4.138 6 C -0.118 4.118 7 C -0.120 4.120 8 C 0.032 3.968 9 N -0.343 5.343 10 C -0.073 4.073 11 C 0.296 3.704 12 O -0.463 6.463 13 C -0.165 4.165 14 C -0.132 4.132 15 C -0.132 4.132 16 C -0.018 4.018 17 C -0.579 4.579 18 H 0.085 0.915 19 C -0.206 4.206 20 N -0.579 5.579 21 Si 0.795 3.205 22 H -0.196 1.196 23 H -0.210 1.210 24 H -0.183 1.183 25 C -0.134 4.134 26 C -0.156 4.156 27 H 0.084 0.916 28 H 0.062 0.938 29 H 0.088 0.912 30 H 0.090 0.910 31 H 0.083 0.917 32 H 0.087 0.913 33 H 0.068 0.932 34 H 0.162 0.838 35 H 0.168 0.832 36 H 0.137 0.863 37 H 0.084 0.916 38 H 0.094 0.906 39 H 0.099 0.901 40 H 0.110 0.890 41 H 0.130 0.870 42 H 0.136 0.864 43 H 0.061 0.939 44 H 0.057 0.943 45 H 0.078 0.922 46 H 0.081 0.919 47 H 0.003 0.997 48 H 0.001 0.999 49 H 0.071 0.929 50 H 0.117 0.883 51 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -1.442 33.564 -2.376 33.679 hybrid contribution 0.150 -1.438 0.477 1.523 sum -1.291 32.126 -1.898 32.208 Atomic orbital electron populations 1.21838 0.93551 1.01590 1.02885 1.20190 0.96541 0.96633 0.94468 1.21819 1.00787 0.94164 1.02843 1.20121 0.96554 0.94936 0.96062 1.21222 1.00423 1.00737 0.91423 1.21288 0.96207 0.94310 0.99948 1.20292 1.00108 0.97007 0.94618 1.20394 0.91703 0.89866 0.94845 1.48029 1.31166 1.08663 1.46483 1.22134 0.89090 1.03471 0.92590 1.21230 0.85568 0.83929 0.79668 1.90665 1.37039 1.81649 1.36942 1.21686 0.99097 0.92218 1.03503 1.21234 0.98766 0.93991 0.99244 1.21441 0.98020 0.93776 0.99981 1.19056 0.95092 0.93395 0.94286 1.21746 1.13288 0.95687 1.27163 0.91504 1.26126 0.97872 1.01573 0.95019 1.70139 1.33934 1.20912 1.32870 0.85357 0.79200 0.78078 0.77851 1.19643 1.20951 1.18266 1.21179 0.99934 0.98910 0.93406 1.21204 0.99439 0.96597 0.98408 0.91604 0.93820 0.91183 0.91043 0.91656 0.91261 0.93224 0.83834 0.83165 0.86343 0.91621 0.90556 0.90078 0.88962 0.86980 0.86445 0.93874 0.94300 0.92199 0.91922 0.99719 0.99895 0.92860 0.88290 0.86435 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.73 9.00 71.98 0.65 -1.08 16 2 C -0.06 -0.83 3.09 -11.54 -0.04 -0.87 16 3 C -0.14 -1.48 9.01 71.98 0.65 -0.84 16 4 C -0.08 -1.38 4.78 -19.87 -0.09 -1.47 16 5 C -0.12 -1.80 8.71 22.27 0.19 -1.61 16 6 C -0.10 -1.49 9.70 22.27 0.22 -1.27 16 7 C -0.12 -2.44 5.46 -19.87 -0.11 -2.55 16 8 C 0.15 2.93 5.53 85.63 0.47 3.41 16 9 N -0.61 -12.39 2.86 -851.11 -2.43 -14.82 16 10 C 0.07 0.75 10.24 127.77 1.31 2.06 16 11 C 0.51 14.72 7.67 87.66 0.67 15.39 16 12 O -0.58 -22.53 15.09 -3.04 -0.05 -22.58 16 13 C -0.13 -3.34 4.25 29.85 0.13 -3.22 16 14 C -0.09 -3.57 4.50 30.59 0.14 -3.43 16 15 C -0.09 -3.99 5.15 30.59 0.16 -3.83 16 16 C 0.02 1.06 4.97 29.85 0.15 1.21 16 17 C -0.54 -31.84 9.11 25.60 0.23 -31.60 16 18 H 0.07 3.68 7.74 -2.91 -0.02 3.65 16 19 C -0.01 -0.53 5.46 84.65 0.46 -0.07 16 20 N -0.94 -59.85 13.29 21.45 0.28 -59.56 16 21 Si 0.97 45.29 29.54 68.60 2.03 47.32 16 22 H -0.27 -12.14 7.11 99.48 0.71 -11.44 16 23 H -0.28 -13.00 7.11 99.48 0.71 -12.30 16 24 H -0.26 -11.33 7.11 99.48 0.71 -10.62 16 25 C -0.12 -2.97 9.70 22.27 0.22 -2.76 16 26 C -0.14 -3.16 9.67 22.27 0.22 -2.94 16 27 H 0.06 0.68 7.37 -2.39 -0.02 0.66 16 28 H 0.04 0.65 8.14 -2.39 -0.02 0.63 16 29 H 0.07 0.68 8.14 -2.39 -0.02 0.66 16 30 H 0.07 1.06 7.88 -2.39 -0.02 1.04 16 31 H 0.06 0.59 7.41 -2.39 -0.02 0.57 16 32 H 0.07 0.59 8.14 -2.39 -0.02 0.57 16 33 H 0.05 0.60 8.14 -2.39 -0.02 0.58 16 34 H 0.14 1.42 7.10 -2.91 -0.02 1.40 16 35 H 0.15 1.25 8.06 -2.91 -0.02 1.23 16 36 H 0.12 1.36 8.02 -2.39 -0.02 1.34 16 37 H 0.07 1.60 7.37 -2.39 -0.02 1.58 16 38 H 0.08 0.61 8.14 -2.39 -0.02 0.59 16 39 H 0.08 0.85 6.44 -2.39 -0.02 0.83 16 40 H 0.09 0.61 8.07 -2.39 -0.02 0.59 16 41 H 0.11 2.49 7.40 -2.38 -0.02 2.47 16 42 H 0.12 2.49 8.11 -2.39 -0.02 2.47 16 43 H 0.04 1.78 8.10 -2.39 -0.02 1.76 16 44 H 0.04 1.63 8.10 -2.38 -0.02 1.61 16 45 H 0.06 2.36 8.14 -2.39 -0.02 2.34 16 46 H 0.06 2.44 8.14 -2.39 -0.02 2.42 16 47 H -0.02 -0.96 8.14 -2.39 -0.02 -0.98 16 48 H -0.02 -1.07 8.14 -2.38 -0.02 -1.09 16 49 H 0.26 15.68 8.31 -92.71 -0.77 14.91 16 50 H 0.10 3.06 7.58 -2.91 -0.02 3.04 16 51 H 0.12 2.55 7.95 -2.92 -0.02 2.53 16 Total: -1.00 -78.37 412.40 6.32 -72.05 By element: Atomic # 1 Polarization: 12.18 SS G_CDS: 0.86 Total: 13.04 kcal Atomic # 6 Polarization: -41.08 SS G_CDS: 5.62 Total: -35.46 kcal Atomic # 7 Polarization: -72.24 SS G_CDS: -2.15 Total: -74.38 kcal Atomic # 8 Polarization: -22.53 SS G_CDS: -0.05 Total: -22.58 kcal Atomic # 14 Polarization: 45.29 SS G_CDS: 2.03 Total: 47.32 kcal Total: -78.37 6.32 -72.05 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000588254388.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.998 kcal (2) G-P(sol) polarization free energy of solvation -78.369 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.371 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.316 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.053 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.055 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds