Wall clock time and date at job start Tue Mar 31 2020 11:23:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.38267 * 120.00080 * 2 1 4 4 C 1.38203 * 119.99976 * 179.97438 * 3 2 1 5 5 C 1.38258 * 120.00322 * 359.80828 * 4 3 2 6 6 C 1.50697 * 120.00275 * 180.22770 * 5 4 3 7 7 H 1.09010 * 109.46812 * 135.50382 * 6 5 4 8 8 C 1.53000 * 109.46944 * 15.51032 * 6 5 4 9 9 N 1.46495 * 109.47732 * 255.50483 * 6 5 4 10 10 C 1.46506 * 119.99678 * 54.40988 * 9 6 5 11 11 C 1.34768 * 120.00575 * 234.41280 * 9 6 5 12 12 O 1.21284 * 119.99876 * 359.97438 * 11 9 6 13 13 C 1.50706 * 120.00253 * 179.97438 * 11 9 6 14 14 C 1.52996 * 109.46786 * 179.97438 * 13 11 9 15 15 C 1.53002 * 109.46962 * 179.97438 * 14 13 11 16 16 C 1.52996 * 109.47436 * 180.02562 * 15 14 13 17 17 C 1.50706 * 109.47261 * 180.02562 * 16 15 14 18 18 H 1.07999 * 119.99620 * 0.02562 * 17 16 15 19 19 C 1.37877 * 119.99934 * 179.97438 * 17 16 15 20 20 N 1.31516 * 119.99895 * 359.97438 * 19 17 16 21 21 Si 1.86803 * 119.99855 * 180.02562 * 19 17 16 22 22 H 1.48500 * 109.47189 * 59.99659 * 21 19 17 23 23 H 1.48499 * 109.47018 * 180.02562 * 21 19 17 24 24 H 1.48503 * 109.46667 * 299.99594 * 21 19 17 25 25 C 1.38215 * 119.99796 * 0.44485 * 5 4 3 26 26 C 1.50699 * 120.00063 * 179.78704 * 25 5 4 27 27 C 1.38211 * 120.00290 * 180.02562 * 2 1 3 28 28 H 1.08998 * 109.47336 * 269.98237 * 1 2 3 29 29 H 1.09007 * 109.47205 * 29.98066 * 1 2 3 30 30 H 1.08996 * 109.47040 * 149.98029 * 1 2 3 31 31 H 1.08001 * 119.99355 * 359.97409 * 3 2 1 32 32 H 1.08002 * 119.99923 * 179.97438 * 4 3 2 33 33 H 1.09000 * 109.47100 * 59.99841 * 8 6 5 34 34 H 1.09005 * 109.47048 * 179.97438 * 8 6 5 35 35 H 1.08994 * 109.47161 * 299.99445 * 8 6 5 36 36 H 1.08998 * 109.47142 * 95.36061 * 10 9 6 37 37 H 1.08995 * 109.47232 * 215.36915 * 10 9 6 38 38 H 1.09004 * 109.46763 * 335.36529 * 10 9 6 39 39 H 1.08994 * 109.46933 * 299.99861 * 13 11 9 40 40 H 1.08999 * 109.47047 * 60.00088 * 13 11 9 41 41 H 1.08996 * 109.48010 * 299.99949 * 14 13 11 42 42 H 1.09006 * 109.47424 * 60.00389 * 14 13 11 43 43 H 1.09006 * 109.47372 * 300.00300 * 15 14 13 44 44 H 1.09006 * 109.46657 * 60.00013 * 15 14 13 45 45 H 1.09004 * 109.47031 * 299.99823 * 16 15 14 46 46 H 1.08999 * 109.46984 * 60.00185 * 16 15 14 47 47 H 0.97007 * 119.99406 * 180.02562 * 20 19 17 48 48 H 1.08998 * 109.47046 * 269.72423 * 26 25 5 49 49 H 1.09000 * 109.46960 * 149.72942 * 26 25 5 50 50 H 1.08996 * 109.47398 * 29.72424 * 26 25 5 51 51 H 1.08002 * 119.99366 * 359.97438 * 27 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1983 1.1974 0.0000 4 6 3.5803 1.1974 0.0005 5 6 4.2717 0.0001 0.0051 6 6 5.7786 0.0001 0.0108 7 1 6.1392 -0.7319 0.7337 8 6 6.2871 1.3907 0.3963 9 7 6.2722 -0.3477 -1.3239 10 6 5.8247 0.4149 -2.4920 11 6 7.1378 -1.3692 -1.4773 12 8 7.5086 -2.0003 -0.5102 13 6 7.6451 -1.7273 -2.8505 14 6 8.6067 -2.9127 -2.7458 15 6 9.1212 -3.2767 -4.1399 16 6 10.0824 -4.4625 -4.0354 17 6 10.5897 -4.8206 -5.4086 18 1 10.2598 -4.2583 -6.2696 19 6 11.4757 -5.8653 -5.5654 20 7 11.8784 -6.5490 -4.5166 21 14 12.1050 -6.3087 -7.2674 22 1 12.8172 -5.1436 -7.8509 23 1 13.0378 -7.4597 -7.1659 24 1 10.9596 -6.6758 -8.1385 25 6 3.5806 -1.1969 -0.0002 26 6 4.3341 -2.5020 -0.0001 27 6 2.1981 -1.1969 -0.0005 28 1 -0.3634 -0.0003 1.0276 29 1 -0.3634 0.8902 -0.5136 30 1 -0.3633 -0.8898 -0.5141 31 1 1.6582 2.1327 -0.0004 32 1 4.1203 2.1327 0.0001 33 1 5.9199 1.6494 1.3895 34 1 7.3772 1.3906 0.4010 35 1 5.9266 2.1226 -0.3264 36 1 6.5520 1.1950 -2.7170 37 1 5.7317 -0.2531 -3.3482 38 1 4.8574 0.8703 -2.2797 39 1 6.8042 -1.9965 -3.4896 40 1 8.1681 -0.8724 -3.2790 41 1 9.4476 -2.6432 -2.1067 42 1 8.0841 -3.7679 -2.3171 43 1 8.2802 -3.5464 -4.7787 44 1 9.6438 -2.4217 -4.5690 45 1 10.9236 -4.1931 -3.3966 46 1 9.5595 -5.3173 -3.6065 47 1 12.5021 -7.2837 -4.6270 48 1 4.5155 -2.8169 -1.0277 49 1 3.7451 -3.2615 0.5140 50 1 5.2867 -2.3716 0.5134 51 1 1.6580 -2.1322 -0.0005 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000588278897.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:23:21 Heat of formation + Delta-G solvation = -44.265893 kcal Electronic energy + Delta-G solvation = -26437.256221 eV Core-core repulsion = 22914.250082 eV Total energy + Delta-G solvation = -3523.006139 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 317.210 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -40.71959 -39.32649 -36.41424 -34.86004 -33.82073 -32.89873 -32.49409 -30.87327 -29.41983 -27.52998 -26.97362 -26.70637 -25.71834 -23.62184 -22.31620 -21.50197 -20.27578 -19.93758 -18.93092 -17.12972 -16.77550 -16.14812 -16.05443 -15.70583 -15.64429 -14.85725 -14.44373 -14.39156 -14.21452 -13.75222 -13.59766 -13.41982 -13.23723 -13.16764 -12.98946 -12.73863 -12.48755 -12.44132 -12.22792 -12.10003 -12.07354 -11.80912 -11.74880 -11.60082 -11.54323 -11.15935 -10.94565 -10.84669 -10.51524 -10.48784 -10.36930 -9.74866 -9.57995 -9.20499 -9.00441 -8.96725 -8.81518 -8.65095 -8.28201 -5.93105 -3.95558 0.99400 1.13896 2.73297 2.92304 3.36602 3.40873 3.43162 3.54815 4.31537 4.47636 4.50472 4.60082 4.66864 4.71766 4.85394 4.95715 5.02890 5.08533 5.11890 5.23867 5.24596 5.27489 5.35881 5.40958 5.41908 5.43178 5.46020 5.51786 5.53996 5.57382 5.67422 5.74862 5.80392 5.89665 5.92737 6.09373 6.17267 6.17541 6.31610 6.32605 6.42012 6.47967 6.58917 6.76104 6.87346 7.04756 7.22405 7.34563 7.76169 7.92787 8.08425 8.25597 8.50232 9.11910 9.67801 11.18135 Molecular weight = 317.21amu Principal moments of inertia in cm(-1) A = 0.023170 B = 0.002169 C = 0.002111 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1208.189725 B =12903.508605 C =13263.056143 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.081 4.081 3 C -0.131 4.131 4 C -0.104 4.104 5 C -0.104 4.104 6 C 0.174 3.826 7 H 0.110 0.890 8 C -0.161 4.161 9 N -0.612 5.612 10 C 0.078 3.922 11 C 0.515 3.485 12 O -0.534 6.534 13 C -0.137 4.137 14 C -0.103 4.103 15 C -0.110 4.110 16 C 0.020 3.980 17 C -0.520 4.520 18 H 0.053 0.947 19 C 0.055 3.945 20 N -0.895 5.895 21 Si 0.892 3.108 22 H -0.277 1.277 23 H -0.288 1.288 24 H -0.277 1.277 25 C -0.057 4.057 26 C -0.122 4.122 27 C -0.123 4.123 28 H 0.069 0.931 29 H 0.065 0.935 30 H 0.065 0.935 31 H 0.120 0.880 32 H 0.126 0.874 33 H 0.067 0.933 34 H 0.063 0.937 35 H 0.061 0.939 36 H 0.056 0.944 37 H 0.072 0.928 38 H 0.071 0.929 39 H 0.089 0.911 40 H 0.089 0.911 41 H 0.063 0.937 42 H 0.063 0.937 43 H 0.046 0.954 44 H 0.046 0.954 45 H 0.016 0.984 46 H 0.015 0.985 47 H 0.260 0.740 48 H 0.070 0.930 49 H 0.064 0.936 50 H 0.079 0.921 51 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.756 19.310 10.303 31.573 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.082 4.082 3 C -0.149 4.149 4 C -0.122 4.122 5 C -0.105 4.105 6 C 0.072 3.928 7 H 0.128 0.872 8 C -0.219 4.219 9 N -0.346 5.346 10 C -0.065 4.065 11 C 0.304 3.696 12 O -0.410 6.410 13 C -0.177 4.177 14 C -0.141 4.141 15 C -0.148 4.148 16 C -0.017 4.017 17 C -0.559 4.559 18 H 0.072 0.928 19 C -0.146 4.146 20 N -0.535 5.535 21 Si 0.719 3.281 22 H -0.203 1.203 23 H -0.213 1.213 24 H -0.203 1.203 25 C -0.058 4.058 26 C -0.179 4.179 27 C -0.141 4.141 28 H 0.088 0.912 29 H 0.084 0.916 30 H 0.084 0.916 31 H 0.138 0.862 32 H 0.144 0.856 33 H 0.086 0.914 34 H 0.082 0.918 35 H 0.079 0.921 36 H 0.074 0.926 37 H 0.090 0.910 38 H 0.090 0.910 39 H 0.107 0.893 40 H 0.107 0.893 41 H 0.082 0.918 42 H 0.081 0.919 43 H 0.064 0.936 44 H 0.065 0.935 45 H 0.034 0.966 46 H 0.034 0.966 47 H 0.070 0.930 48 H 0.089 0.911 49 H 0.083 0.917 50 H 0.098 0.902 51 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -22.419 18.808 10.867 31.216 hybrid contribution 0.259 -0.163 -1.045 1.089 sum -22.160 18.645 9.822 30.581 Atomic orbital electron populations 1.20795 0.91297 1.02755 1.02285 1.19928 0.95981 0.93193 0.99049 1.20974 0.94105 0.97391 1.02448 1.21142 0.94039 0.97638 0.99414 1.19919 0.95125 0.92889 1.02588 1.19838 0.89019 0.98070 0.85903 0.87197 1.22202 1.01929 0.96131 1.01636 1.47991 1.45951 1.33578 1.07115 1.21741 1.00196 0.96487 0.88083 1.21108 0.77612 0.78564 0.92289 1.90679 1.57387 1.51199 1.41745 1.21821 1.01090 1.01528 0.93221 1.21452 0.97728 0.95554 0.99322 1.21647 0.99363 1.00115 0.93634 1.19089 0.93703 0.92065 0.96819 1.21248 1.26010 1.15052 0.93543 0.92833 1.25046 0.96539 0.96415 0.96609 1.69969 1.33322 1.21125 1.29044 0.86672 0.78704 0.77881 0.84797 1.20295 1.21333 1.20301 1.19846 0.93520 0.95162 0.97232 1.20925 1.00649 0.93489 1.02792 1.20929 0.93411 0.97624 1.02178 0.91206 0.91584 0.91550 0.86239 0.85588 0.91359 0.91813 0.92053 0.92574 0.90961 0.91018 0.89300 0.89250 0.91835 0.91865 0.93554 0.93531 0.96609 0.96618 0.93009 0.91145 0.91746 0.90209 0.86132 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.67 10.01 36.00 0.36 -0.31 16 2 C -0.08 -0.67 5.88 -104.62 -0.62 -1.29 16 3 C -0.13 -1.03 9.70 -39.58 -0.38 -1.41 16 4 C -0.10 -0.85 8.37 -39.59 -0.33 -1.18 16 5 C -0.10 -1.01 4.32 -104.62 -0.45 -1.47 16 6 C 0.17 1.81 2.16 -69.09 -0.15 1.66 16 7 H 0.11 1.38 5.48 -51.92 -0.28 1.09 16 8 C -0.16 -1.32 8.10 37.16 0.30 -1.02 16 9 N -0.61 -6.70 2.65 -175.26 -0.46 -7.16 16 10 C 0.08 0.64 9.39 59.85 0.56 1.21 16 11 C 0.51 7.26 7.49 -10.99 -0.08 7.18 16 12 O -0.53 -9.39 14.36 5.55 0.08 -9.31 16 13 C -0.14 -1.88 4.32 -27.88 -0.12 -2.00 16 14 C -0.10 -1.86 4.50 -26.73 -0.12 -1.98 16 15 C -0.11 -2.29 5.15 -26.73 -0.14 -2.43 16 16 C 0.02 0.54 4.97 -27.88 -0.14 0.41 16 17 C -0.52 -15.11 9.11 -34.44 -0.31 -15.42 16 18 H 0.05 1.49 7.74 -52.49 -0.41 1.09 16 19 C 0.05 1.62 5.46 -17.82 -0.10 1.52 16 20 N -0.90 -27.69 13.29 55.43 0.74 -26.95 16 21 Si 0.89 22.05 29.54 -169.99 -5.02 17.03 16 22 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 23 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 24 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 25 C -0.06 -0.60 5.88 -104.62 -0.62 -1.21 16 26 C -0.12 -1.36 9.34 36.00 0.34 -1.03 16 27 C -0.12 -1.15 9.36 -39.58 -0.37 -1.52 16 28 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16 29 H 0.07 0.32 8.09 -51.93 -0.42 -0.10 16 30 H 0.07 0.36 8.09 -51.93 -0.42 -0.06 16 31 H 0.12 0.70 8.06 -52.49 -0.42 0.28 16 32 H 0.13 0.82 5.96 -52.49 -0.31 0.50 16 33 H 0.07 0.49 8.12 -51.93 -0.42 0.07 16 34 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 35 H 0.06 0.42 6.51 -51.93 -0.34 0.08 16 36 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 37 H 0.07 0.56 6.66 -51.93 -0.35 0.22 16 38 H 0.07 0.54 6.48 -51.93 -0.34 0.20 16 39 H 0.09 1.08 7.41 -51.93 -0.38 0.70 16 40 H 0.09 1.09 8.11 -51.93 -0.42 0.67 16 41 H 0.06 1.23 8.10 -51.93 -0.42 0.81 16 42 H 0.06 1.22 8.10 -51.93 -0.42 0.80 16 43 H 0.05 0.93 8.14 -51.93 -0.42 0.51 16 44 H 0.05 0.93 8.14 -51.93 -0.42 0.51 16 45 H 0.02 0.45 8.14 -51.93 -0.42 0.02 16 46 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 47 H 0.26 7.59 8.31 -40.82 -0.34 7.25 16 48 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 49 H 0.06 0.63 8.09 -51.93 -0.42 0.21 16 50 H 0.08 1.02 5.23 -51.93 -0.27 0.75 16 51 H 0.12 0.98 8.06 -52.49 -0.42 0.55 16 LS Contribution 402.39 15.07 6.06 6.06 Total: -1.00 -33.26 402.39 -9.96 -43.22 By element: Atomic # 1 Polarization: 6.40 SS G_CDS: -8.99 Total: -2.58 kcal Atomic # 6 Polarization: -17.93 SS G_CDS: -2.37 Total: -20.30 kcal Atomic # 7 Polarization: -34.39 SS G_CDS: 0.27 Total: -34.12 kcal Atomic # 8 Polarization: -9.39 SS G_CDS: 0.08 Total: -9.31 kcal Atomic # 14 Polarization: 22.05 SS G_CDS: -5.02 Total: 17.03 kcal Total LS contribution 6.06 Total: 6.06 kcal Total: -33.26 -9.96 -43.22 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000588278897.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.046 kcal (2) G-P(sol) polarization free energy of solvation -33.260 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.305 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.961 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.220 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.266 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds