Wall clock time and date at job start Tue Mar 31 2020 11:23:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.38267 * 120.00080 * 2 1 4 4 C 1.38203 * 119.99976 * 179.97438 * 3 2 1 5 5 C 1.38258 * 120.00322 * 359.80828 * 4 3 2 6 6 C 1.50697 * 120.00275 * 180.22770 * 5 4 3 7 7 H 1.09010 * 109.46812 * 135.50382 * 6 5 4 8 8 C 1.53000 * 109.46944 * 15.51032 * 6 5 4 9 9 N 1.46495 * 109.47732 * 255.50483 * 6 5 4 10 10 C 1.46506 * 119.99678 * 54.40988 * 9 6 5 11 11 C 1.34768 * 120.00575 * 234.41280 * 9 6 5 12 12 O 1.21284 * 119.99876 * 359.97438 * 11 9 6 13 13 C 1.50706 * 120.00253 * 179.97438 * 11 9 6 14 14 C 1.52996 * 109.46786 * 179.97438 * 13 11 9 15 15 C 1.53002 * 109.46962 * 179.97438 * 14 13 11 16 16 C 1.52996 * 109.47436 * 180.02562 * 15 14 13 17 17 C 1.50706 * 109.47261 * 180.02562 * 16 15 14 18 18 H 1.07999 * 119.99620 * 0.02562 * 17 16 15 19 19 C 1.37877 * 119.99934 * 179.97438 * 17 16 15 20 20 N 1.31516 * 119.99895 * 359.97438 * 19 17 16 21 21 Si 1.86803 * 119.99855 * 180.02562 * 19 17 16 22 22 H 1.48500 * 109.47189 * 59.99659 * 21 19 17 23 23 H 1.48499 * 109.47018 * 180.02562 * 21 19 17 24 24 H 1.48503 * 109.46667 * 299.99594 * 21 19 17 25 25 C 1.38215 * 119.99796 * 0.44485 * 5 4 3 26 26 C 1.50699 * 120.00063 * 179.78704 * 25 5 4 27 27 C 1.38211 * 120.00290 * 180.02562 * 2 1 3 28 28 H 1.08998 * 109.47336 * 269.98237 * 1 2 3 29 29 H 1.09007 * 109.47205 * 29.98066 * 1 2 3 30 30 H 1.08996 * 109.47040 * 149.98029 * 1 2 3 31 31 H 1.08001 * 119.99355 * 359.97409 * 3 2 1 32 32 H 1.08002 * 119.99923 * 179.97438 * 4 3 2 33 33 H 1.09000 * 109.47100 * 59.99841 * 8 6 5 34 34 H 1.09005 * 109.47048 * 179.97438 * 8 6 5 35 35 H 1.08994 * 109.47161 * 299.99445 * 8 6 5 36 36 H 1.08998 * 109.47142 * 95.36061 * 10 9 6 37 37 H 1.08995 * 109.47232 * 215.36915 * 10 9 6 38 38 H 1.09004 * 109.46763 * 335.36529 * 10 9 6 39 39 H 1.08994 * 109.46933 * 299.99861 * 13 11 9 40 40 H 1.08999 * 109.47047 * 60.00088 * 13 11 9 41 41 H 1.08996 * 109.48010 * 299.99949 * 14 13 11 42 42 H 1.09006 * 109.47424 * 60.00389 * 14 13 11 43 43 H 1.09006 * 109.47372 * 300.00300 * 15 14 13 44 44 H 1.09006 * 109.46657 * 60.00013 * 15 14 13 45 45 H 1.09004 * 109.47031 * 299.99823 * 16 15 14 46 46 H 1.08999 * 109.46984 * 60.00185 * 16 15 14 47 47 H 0.97007 * 119.99406 * 180.02562 * 20 19 17 48 48 H 1.08998 * 109.47046 * 269.72423 * 26 25 5 49 49 H 1.09000 * 109.46960 * 149.72942 * 26 25 5 50 50 H 1.08996 * 109.47398 * 29.72424 * 26 25 5 51 51 H 1.08002 * 119.99366 * 359.97438 * 27 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1983 1.1974 0.0000 4 6 3.5803 1.1974 0.0005 5 6 4.2717 0.0001 0.0051 6 6 5.7786 0.0001 0.0108 7 1 6.1392 -0.7319 0.7337 8 6 6.2871 1.3907 0.3963 9 7 6.2722 -0.3477 -1.3239 10 6 5.8247 0.4149 -2.4920 11 6 7.1378 -1.3692 -1.4773 12 8 7.5086 -2.0003 -0.5102 13 6 7.6451 -1.7273 -2.8505 14 6 8.6067 -2.9127 -2.7458 15 6 9.1212 -3.2767 -4.1399 16 6 10.0824 -4.4625 -4.0354 17 6 10.5897 -4.8206 -5.4086 18 1 10.2598 -4.2583 -6.2696 19 6 11.4757 -5.8653 -5.5654 20 7 11.8784 -6.5490 -4.5166 21 14 12.1050 -6.3087 -7.2674 22 1 12.8172 -5.1436 -7.8509 23 1 13.0378 -7.4597 -7.1659 24 1 10.9596 -6.6758 -8.1385 25 6 3.5806 -1.1969 -0.0002 26 6 4.3341 -2.5020 -0.0001 27 6 2.1981 -1.1969 -0.0005 28 1 -0.3634 -0.0003 1.0276 29 1 -0.3634 0.8902 -0.5136 30 1 -0.3633 -0.8898 -0.5141 31 1 1.6582 2.1327 -0.0004 32 1 4.1203 2.1327 0.0001 33 1 5.9199 1.6494 1.3895 34 1 7.3772 1.3906 0.4010 35 1 5.9266 2.1226 -0.3264 36 1 6.5520 1.1950 -2.7170 37 1 5.7317 -0.2531 -3.3482 38 1 4.8574 0.8703 -2.2797 39 1 6.8042 -1.9965 -3.4896 40 1 8.1681 -0.8724 -3.2790 41 1 9.4476 -2.6432 -2.1067 42 1 8.0841 -3.7679 -2.3171 43 1 8.2802 -3.5464 -4.7787 44 1 9.6438 -2.4217 -4.5690 45 1 10.9236 -4.1931 -3.3966 46 1 9.5595 -5.3173 -3.6065 47 1 12.5021 -7.2837 -4.6270 48 1 4.5155 -2.8169 -1.0277 49 1 3.7451 -3.2615 0.5140 50 1 5.2867 -2.3716 0.5134 51 1 1.6580 -2.1322 -0.0005 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000588278897.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:23:21 Heat of formation + Delta-G solvation = -60.834920 kcal Electronic energy + Delta-G solvation = -26437.974708 eV Core-core repulsion = 22914.250082 eV Total energy + Delta-G solvation = -3523.724626 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 317.210 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.56935 -40.21516 -37.35344 -36.56130 -34.78790 -34.38430 -33.57821 -31.82892 -30.88969 -28.23496 -27.78275 -27.47933 -27.32366 -24.82536 -23.58947 -22.37457 -21.76512 -20.99791 -19.86442 -18.44130 -18.10012 -17.54659 -17.08468 -16.60974 -16.50628 -16.40750 -15.77089 -15.45204 -15.00855 -14.58896 -14.54320 -14.41410 -14.26796 -14.11783 -13.93424 -13.69030 -13.61818 -13.53520 -13.39597 -13.16725 -13.08117 -12.82507 -12.80020 -12.75030 -12.48159 -12.41501 -12.36230 -12.14243 -12.12932 -11.83034 -11.56322 -11.38127 -11.33954 -11.14214 -10.71490 -10.54453 -9.69011 -9.65842 -9.37284 -8.18427 -6.30761 0.31661 0.47114 1.40005 1.44304 1.52126 1.65569 2.05942 2.42007 2.85324 3.13917 3.52116 3.76408 3.82676 3.97739 4.03292 4.04834 4.11121 4.18081 4.27022 4.29687 4.39538 4.53665 4.59408 4.61656 4.63919 4.64290 4.73144 4.76692 4.80312 4.82151 4.84504 4.86352 4.90950 4.96630 4.97974 5.05351 5.18503 5.19516 5.28536 5.31315 5.32042 5.36805 5.49417 5.55975 5.62034 5.70274 5.75359 5.77633 5.87666 6.11558 6.25206 6.39474 6.87250 7.21349 7.38625 8.93555 Molecular weight = 317.21amu Principal moments of inertia in cm(-1) A = 0.023170 B = 0.002169 C = 0.002111 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1208.189725 B =12903.508605 C =13263.056143 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.085 4.085 3 C -0.131 4.131 4 C -0.100 4.100 5 C -0.112 4.112 6 C 0.173 3.827 7 H 0.078 0.922 8 C -0.154 4.154 9 N -0.603 5.603 10 C 0.071 3.929 11 C 0.510 3.490 12 O -0.582 6.582 13 C -0.127 4.127 14 C -0.093 4.093 15 C -0.095 4.095 16 C 0.019 3.981 17 C -0.542 4.542 18 H 0.066 0.934 19 C -0.008 4.008 20 N -0.937 5.937 21 Si 0.970 3.030 22 H -0.264 1.264 23 H -0.285 1.285 24 H -0.264 1.264 25 C -0.077 4.077 26 C -0.114 4.114 27 C -0.135 4.135 28 H 0.077 0.923 29 H 0.079 0.921 30 H 0.068 0.932 31 H 0.145 0.855 32 H 0.148 0.852 33 H 0.079 0.921 34 H 0.050 0.950 35 H 0.082 0.918 36 H 0.075 0.925 37 H 0.079 0.921 38 H 0.082 0.918 39 H 0.112 0.888 40 H 0.115 0.885 41 H 0.043 0.957 42 H 0.041 0.959 43 H 0.059 0.941 44 H 0.060 0.940 45 H -0.016 1.016 46 H -0.016 1.016 47 H 0.263 0.737 48 H 0.056 0.944 49 H 0.070 0.930 50 H 0.057 0.943 51 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.742 22.192 8.341 34.268 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.085 4.085 3 C -0.149 4.149 4 C -0.118 4.118 5 C -0.113 4.113 6 C 0.070 3.930 7 H 0.096 0.904 8 C -0.212 4.212 9 N -0.335 5.335 10 C -0.071 4.071 11 C 0.300 3.700 12 O -0.462 6.462 13 C -0.166 4.166 14 C -0.131 4.131 15 C -0.132 4.132 16 C -0.018 4.018 17 C -0.580 4.580 18 H 0.084 0.916 19 C -0.205 4.205 20 N -0.578 5.578 21 Si 0.794 3.206 22 H -0.189 1.189 23 H -0.211 1.211 24 H -0.189 1.189 25 C -0.078 4.078 26 C -0.171 4.171 27 C -0.153 4.153 28 H 0.096 0.904 29 H 0.098 0.902 30 H 0.087 0.913 31 H 0.163 0.837 32 H 0.165 0.835 33 H 0.098 0.902 34 H 0.070 0.930 35 H 0.101 0.899 36 H 0.094 0.906 37 H 0.098 0.902 38 H 0.101 0.899 39 H 0.130 0.870 40 H 0.133 0.867 41 H 0.061 0.939 42 H 0.060 0.940 43 H 0.078 0.922 44 H 0.079 0.921 45 H 0.003 0.997 46 H 0.002 0.998 47 H 0.071 0.929 48 H 0.075 0.925 49 H 0.089 0.911 50 H 0.076 0.924 51 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -24.444 21.741 8.889 33.899 hybrid contribution 0.812 -1.050 -0.361 1.376 sum -23.631 20.690 8.527 32.546 Atomic orbital electron populations 1.20839 0.89562 1.03595 1.03018 1.20255 0.97351 0.92895 0.98019 1.21318 0.94083 0.98250 1.01208 1.21355 0.94422 0.97613 0.98431 1.19869 0.94442 0.93408 1.03599 1.19841 0.89770 0.98476 0.84889 0.90353 1.22155 1.01106 0.95026 1.02893 1.47999 1.44514 1.32531 1.08447 1.21998 1.01282 0.96820 0.87012 1.21145 0.78046 0.78994 0.91769 1.90668 1.59392 1.53065 1.43034 1.21691 1.00915 1.00272 0.93712 1.21227 0.97914 0.96918 0.97066 1.21442 0.98411 0.97912 0.95461 1.19047 0.93728 0.93462 0.95526 1.21717 1.26279 1.15464 0.94526 0.91583 1.26114 0.96729 0.96257 1.01417 1.70134 1.34033 1.21744 1.31873 0.85426 0.78338 0.77857 0.78963 1.18869 1.21067 1.18907 1.19868 0.94179 0.94844 0.98900 1.20790 0.99908 0.94768 1.01643 1.21068 0.92999 0.98656 1.02560 0.90434 0.90184 0.91330 0.83715 0.83475 0.90245 0.93040 0.89884 0.90646 0.90221 0.89884 0.87025 0.86704 0.93862 0.93980 0.92223 0.92101 0.99727 0.99783 0.92861 0.92509 0.91127 0.92433 0.85667 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.03 10.01 71.23 0.71 -0.32 16 2 C -0.09 -1.21 5.88 -19.87 -0.12 -1.33 16 3 C -0.13 -1.63 9.70 22.27 0.22 -1.42 16 4 C -0.10 -1.36 8.37 22.27 0.19 -1.17 16 5 C -0.11 -2.07 4.32 -19.87 -0.09 -2.16 16 6 C 0.17 3.56 2.16 44.25 0.10 3.65 16 7 H 0.08 2.13 5.48 -2.38 -0.01 2.12 16 8 C -0.15 -2.30 8.10 71.98 0.58 -1.72 16 9 N -0.60 -12.76 2.65 -826.79 -2.19 -14.95 16 10 C 0.07 0.97 9.39 127.77 1.20 2.17 16 11 C 0.51 14.63 7.49 87.66 0.66 15.29 16 12 O -0.58 -21.87 14.36 -3.04 -0.04 -21.92 16 13 C -0.13 -3.36 4.32 29.85 0.13 -3.23 16 14 C -0.09 -3.48 4.50 30.59 0.14 -3.34 16 15 C -0.09 -3.96 5.15 30.59 0.16 -3.81 16 16 C 0.02 1.09 4.97 29.85 0.15 1.24 16 17 C -0.54 -31.81 9.11 25.60 0.23 -31.57 16 18 H 0.07 3.62 7.74 -2.91 -0.02 3.60 16 19 C -0.01 -0.48 5.46 84.65 0.46 -0.01 16 20 N -0.94 -59.61 13.29 21.45 0.28 -59.33 16 21 Si 0.97 45.19 29.54 68.60 2.03 47.22 16 22 H -0.26 -11.67 7.11 99.48 0.71 -10.96 16 23 H -0.29 -13.06 7.11 99.48 0.71 -12.35 16 24 H -0.26 -11.69 7.11 99.48 0.71 -10.99 16 25 C -0.08 -1.62 5.88 -19.87 -0.12 -1.74 16 26 C -0.11 -2.75 9.34 71.24 0.67 -2.09 16 27 C -0.13 -2.41 9.36 22.27 0.21 -2.20 16 28 H 0.08 0.61 8.14 -2.39 -0.02 0.59 16 29 H 0.08 0.51 8.09 -2.38 -0.02 0.50 16 30 H 0.07 0.60 8.09 -2.39 -0.02 0.58 16 31 H 0.15 1.07 8.06 -2.91 -0.02 1.05 16 32 H 0.15 1.33 5.96 -2.91 -0.02 1.31 16 33 H 0.08 1.01 8.12 -2.39 -0.02 0.99 16 34 H 0.05 0.90 8.14 -2.38 -0.02 0.88 16 35 H 0.08 0.87 6.51 -2.39 -0.02 0.85 16 36 H 0.08 0.80 8.14 -2.39 -0.02 0.78 16 37 H 0.08 1.00 6.66 -2.39 -0.02 0.99 16 38 H 0.08 0.98 6.48 -2.38 -0.02 0.97 16 39 H 0.11 2.48 7.41 -2.39 -0.02 2.46 16 40 H 0.11 2.49 8.11 -2.39 -0.02 2.47 16 41 H 0.04 1.76 8.10 -2.39 -0.02 1.74 16 42 H 0.04 1.72 8.10 -2.38 -0.02 1.70 16 43 H 0.06 2.33 8.14 -2.38 -0.02 2.31 16 44 H 0.06 2.37 8.14 -2.38 -0.02 2.35 16 45 H -0.02 -0.96 8.14 -2.38 -0.02 -0.98 16 46 H -0.02 -0.99 8.14 -2.39 -0.02 -1.01 16 47 H 0.26 15.67 8.31 -92.70 -0.77 14.90 16 48 H 0.06 1.46 8.14 -2.39 -0.02 1.44 16 49 H 0.07 1.51 8.09 -2.39 -0.02 1.49 16 50 H 0.06 1.64 5.23 -2.39 -0.01 1.62 16 51 H 0.13 1.99 8.06 -2.91 -0.02 1.97 16 Total: -1.00 -75.77 402.39 6.43 -69.34 By element: Atomic # 1 Polarization: 12.49 SS G_CDS: 0.88 Total: 13.38 kcal Atomic # 6 Polarization: -39.22 SS G_CDS: 5.47 Total: -33.75 kcal Atomic # 7 Polarization: -72.37 SS G_CDS: -1.91 Total: -74.27 kcal Atomic # 8 Polarization: -21.87 SS G_CDS: -0.04 Total: -21.92 kcal Atomic # 14 Polarization: 45.19 SS G_CDS: 2.03 Total: 47.22 kcal Total: -75.77 6.43 -69.34 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000588278897.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.505 kcal (2) G-P(sol) polarization free energy of solvation -75.771 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.267 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.432 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.340 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.835 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds