Wall clock time and date at job start Tue Mar 31 2020 11:34:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.38311 * 119.96002 * 2 1 4 4 C 1.38259 * 120.13596 * 180.02562 * 3 2 1 5 5 C 1.38132 * 120.07678 * 359.74716 * 4 3 2 6 6 C 1.50699 * 120.03925 * 180.25897 * 5 4 3 7 7 C 1.38862 * 119.92408 * 0.52669 * 5 4 3 8 8 N 1.39928 * 120.06623 * 179.74873 * 7 5 4 9 9 C 1.34773 * 119.99859 * 89.73143 * 8 7 5 10 10 O 1.21296 * 119.99943 * 5.00382 * 9 8 7 11 11 C 1.50700 * 120.00052 * 185.01221 * 9 8 7 12 12 C 1.53004 * 109.47105 * 184.05119 * 11 9 8 13 13 C 1.52995 * 109.46880 * 179.97438 * 12 11 9 14 14 C 1.53007 * 109.47218 * 180.02562 * 13 12 11 15 15 C 1.50700 * 109.47073 * 180.02562 * 14 13 12 16 16 H 1.07998 * 120.00464 * 359.97438 * 15 14 13 17 17 C 1.37881 * 119.99680 * 180.02562 * 15 14 13 18 18 N 1.31515 * 120.00069 * 359.97438 * 17 15 14 19 19 Si 1.86795 * 120.00010 * 179.97438 * 17 15 14 20 20 H 1.48501 * 109.47159 * 59.99703 * 19 17 15 21 21 H 1.48497 * 109.47363 * 179.97438 * 19 17 15 22 22 H 1.48501 * 109.47017 * 300.00121 * 19 17 15 23 23 C 1.46499 * 119.99918 * 269.72226 * 8 7 5 24 24 C 1.52994 * 109.47097 * 299.43923 * 23 8 7 25 25 C 1.52997 * 109.46961 * 59.44281 * 23 8 7 26 26 C 1.38085 * 119.96650 * 180.02562 * 2 1 3 27 27 H 1.09003 * 109.47013 * 269.97226 * 1 2 3 28 28 H 1.09002 * 109.47474 * 29.97519 * 1 2 3 29 29 H 1.09004 * 109.47191 * 149.98081 * 1 2 3 30 30 H 1.07991 * 119.93097 * 0.02562 * 3 2 1 31 31 H 1.08003 * 119.95939 * 179.97438 * 4 3 2 32 32 H 1.09000 * 109.46603 * 270.26837 * 6 5 4 33 33 H 1.08998 * 109.47491 * 30.27115 * 6 5 4 34 34 H 1.08998 * 109.47084 * 150.27546 * 6 5 4 35 35 H 1.09005 * 109.46519 * 304.04952 * 11 9 8 36 36 H 1.08995 * 109.47071 * 64.05015 * 11 9 8 37 37 H 1.08993 * 109.47106 * 299.99629 * 12 11 9 38 38 H 1.09006 * 109.46894 * 59.99672 * 12 11 9 39 39 H 1.09003 * 109.47838 * 300.00373 * 13 12 11 40 40 H 1.09006 * 109.47103 * 60.00439 * 13 12 11 41 41 H 1.09003 * 109.46388 * 300.00347 * 14 13 12 42 42 H 1.08997 * 109.46874 * 60.00022 * 14 13 12 43 43 H 0.96999 * 120.00188 * 179.97438 * 18 17 15 44 44 H 1.09000 * 109.46572 * 179.44378 * 23 8 7 45 45 H 1.09004 * 109.47264 * 65.49623 * 24 23 8 46 46 H 1.09000 * 109.47457 * 185.49219 * 24 23 8 47 47 H 1.09002 * 109.47888 * 305.49323 * 24 23 8 48 48 H 1.08994 * 109.47634 * 61.58183 * 25 23 8 49 49 H 1.08997 * 109.46938 * 181.58711 * 25 23 8 50 50 H 1.09004 * 109.47140 * 301.57849 * 25 23 8 51 51 H 1.07999 * 120.03911 * 0.02562 * 26 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1977 1.1983 0.0000 4 6 3.5803 1.2025 -0.0005 5 6 4.2762 0.0093 0.0042 6 6 5.7832 0.0150 0.0095 7 6 3.5857 -1.1954 -0.0016 8 7 4.2877 -2.4058 -0.0021 9 6 4.6261 -2.9890 1.1648 10 8 4.2446 -2.5136 2.2135 11 6 5.4786 -4.2317 1.1668 12 6 5.6304 -4.7438 2.6006 13 6 6.4953 -6.0058 2.6024 14 6 6.6466 -6.5183 4.0361 15 6 7.4992 -7.7610 4.0380 16 1 7.8933 -8.1469 3.1095 17 6 7.7751 -8.4059 5.2251 18 7 7.2948 -7.9362 6.3557 19 14 8.8312 -9.9466 5.2274 20 1 10.1712 -9.6291 4.6717 21 1 8.9782 -10.4440 6.6189 22 1 8.1844 -10.9913 4.3935 23 6 4.6546 -3.0392 -1.2711 24 6 3.3875 -3.3587 -2.0667 25 6 5.5380 -2.0870 -2.0796 26 6 2.1967 -1.1963 -0.0005 27 1 -0.3633 -0.0005 1.0277 28 1 -0.3634 0.8902 -0.5134 29 1 -0.3634 -0.8898 -0.5141 30 1 1.6560 2.1325 0.0004 31 1 4.1168 2.1399 -0.0010 32 1 6.1500 0.0192 -1.0169 33 1 6.1414 0.9048 0.5271 34 1 6.1480 -0.8751 0.5220 35 1 5.0037 -4.9990 0.5553 36 1 6.4618 -3.9984 0.7583 37 1 6.1052 -3.9766 3.2120 38 1 4.6470 -4.9771 3.0091 39 1 6.0203 -6.7730 1.9910 40 1 7.4787 -5.7729 2.1938 41 1 7.1216 -5.7513 4.6479 42 1 5.6632 -6.7513 4.4443 43 1 7.4886 -8.3901 7.1907 44 1 5.2009 -3.9612 -1.0723 45 1 2.8921 -2.4299 -2.3495 46 1 3.6532 -3.9166 -2.9647 47 1 2.7142 -3.9573 -1.4531 48 1 6.4536 -1.8816 -1.5250 49 1 5.7879 -2.5469 -3.0357 50 1 5.0020 -1.1541 -2.2543 51 1 1.6568 -2.1316 -0.0014 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000588907462.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:34:32 Heat of formation + Delta-G solvation = -40.726688 kcal Electronic energy + Delta-G solvation = -26866.549674 eV Core-core repulsion = 23343.697007 eV Total energy + Delta-G solvation = -3522.852667 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 317.210 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.01954 -38.88020 -36.75762 -34.93201 -33.93726 -32.64849 -32.25669 -30.47633 -29.68960 -29.12577 -27.36780 -25.85490 -24.94935 -23.34209 -22.36566 -21.95078 -20.93340 -19.99078 -18.73096 -17.10489 -16.70251 -16.39508 -16.12808 -15.79629 -15.31041 -14.63261 -14.42713 -14.27155 -14.12341 -14.03774 -13.87940 -13.45679 -13.29836 -13.12395 -12.87791 -12.65538 -12.44791 -12.38654 -12.25529 -12.08639 -11.85975 -11.69595 -11.63207 -11.51205 -11.42674 -11.25752 -11.09518 -10.95051 -10.52595 -10.51313 -10.37254 -9.78815 -9.59605 -9.22977 -9.01842 -8.97578 -8.92495 -8.57450 -8.28807 -5.93608 -3.96239 1.08623 1.19048 2.67093 2.80904 3.36162 3.40555 3.42714 3.46826 4.47799 4.49843 4.59430 4.62301 4.67008 4.77065 4.81391 4.92187 4.96466 5.02834 5.25570 5.27979 5.30713 5.34518 5.36192 5.37042 5.41599 5.43251 5.46271 5.50286 5.55139 5.58441 5.67634 5.75765 5.81221 5.90423 5.92626 6.02836 6.14028 6.18493 6.29507 6.32593 6.43451 6.49309 6.56395 6.85058 6.95490 7.02410 7.20646 7.27720 7.75463 7.91844 8.07802 8.24984 8.49369 9.11306 9.67215 11.17710 Molecular weight = 317.21amu Principal moments of inertia in cm(-1) A = 0.020415 B = 0.002423 C = 0.002357 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1371.228650 B =11553.195008 C =11874.199531 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.089 4.089 3 C -0.116 4.116 4 C -0.113 4.113 5 C -0.082 4.082 6 C -0.115 4.115 7 C 0.153 3.847 8 N -0.577 5.577 9 C 0.516 3.484 10 O -0.520 6.520 11 C -0.137 4.137 12 C -0.104 4.104 13 C -0.109 4.109 14 C 0.020 3.980 15 C -0.521 4.521 16 H 0.054 0.946 17 C 0.055 3.945 18 N -0.895 5.895 19 Si 0.892 3.108 20 H -0.277 1.277 21 H -0.288 1.288 22 H -0.277 1.277 23 C 0.130 3.870 24 C -0.164 4.164 25 C -0.168 4.168 26 C -0.105 4.105 27 H 0.071 0.929 28 H 0.065 0.935 29 H 0.065 0.935 30 H 0.122 0.878 31 H 0.124 0.876 32 H 0.074 0.926 33 H 0.064 0.936 34 H 0.066 0.934 35 H 0.090 0.910 36 H 0.092 0.908 37 H 0.064 0.936 38 H 0.062 0.938 39 H 0.046 0.954 40 H 0.047 0.953 41 H 0.016 0.984 42 H 0.015 0.985 43 H 0.260 0.740 44 H 0.102 0.898 45 H 0.060 0.940 46 H 0.069 0.931 47 H 0.061 0.939 48 H 0.065 0.935 49 H 0.068 0.932 50 H 0.062 0.938 51 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.043 18.508 -21.510 30.101 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.089 4.089 3 C -0.134 4.134 4 C -0.132 4.132 5 C -0.084 4.084 6 C -0.172 4.172 7 C 0.063 3.937 8 N -0.310 5.310 9 C 0.306 3.694 10 O -0.394 6.394 11 C -0.177 4.177 12 C -0.142 4.142 13 C -0.147 4.147 14 C -0.017 4.017 15 C -0.559 4.559 16 H 0.072 0.928 17 C -0.146 4.146 18 N -0.535 5.535 19 Si 0.719 3.281 20 H -0.203 1.203 21 H -0.213 1.213 22 H -0.203 1.203 23 C 0.027 3.973 24 C -0.222 4.222 25 C -0.226 4.226 26 C -0.124 4.124 27 H 0.089 0.911 28 H 0.084 0.916 29 H 0.084 0.916 30 H 0.140 0.860 31 H 0.142 0.858 32 H 0.092 0.908 33 H 0.083 0.917 34 H 0.085 0.915 35 H 0.108 0.892 36 H 0.111 0.889 37 H 0.083 0.917 38 H 0.081 0.919 39 H 0.065 0.935 40 H 0.065 0.935 41 H 0.034 0.966 42 H 0.034 0.966 43 H 0.070 0.930 44 H 0.120 0.880 45 H 0.079 0.921 46 H 0.088 0.912 47 H 0.080 0.920 48 H 0.084 0.916 49 H 0.087 0.913 50 H 0.081 0.919 51 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -10.232 18.690 -20.721 29.722 hybrid contribution 0.541 -0.866 0.046 1.022 sum -9.691 17.824 -20.675 28.967 Atomic orbital electron populations 1.20773 0.91047 1.02591 1.02489 1.19769 0.96086 0.92716 1.00345 1.21015 0.94097 0.97440 1.00879 1.20893 0.94068 0.97124 1.01074 1.20082 0.96395 0.92327 0.99552 1.20921 0.91075 1.02936 1.02229 1.17249 0.90069 0.85042 1.01301 1.45743 1.57171 1.21437 1.06643 1.21231 0.80093 0.85670 0.82425 1.90734 1.53316 1.64444 1.30857 1.21852 0.99522 0.94255 1.02030 1.21473 1.01476 0.98712 0.92505 1.21644 0.97438 0.94369 1.01244 1.19089 0.96951 0.95626 0.90012 1.21243 1.31371 1.10372 0.92903 0.92814 1.25043 0.96195 0.97603 0.95726 1.69965 1.45344 1.40216 0.97953 0.86672 0.80948 0.83525 0.76915 1.20289 1.21327 1.20285 1.21302 0.96141 0.96737 0.83085 1.22197 0.97595 1.02182 1.00244 1.22380 1.00015 1.00079 1.00135 1.21196 0.93157 0.97927 1.00133 0.91081 0.91563 0.91626 0.86028 0.85837 0.90756 0.91697 0.91498 0.89156 0.88933 0.91697 0.91890 0.93490 0.93466 0.96601 0.96617 0.92988 0.88001 0.92124 0.91204 0.92030 0.91618 0.91348 0.91911 0.86080 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.84 10.01 36.00 0.36 -0.48 16 2 C -0.09 -0.89 5.88 -104.65 -0.62 -1.51 16 3 C -0.12 -1.09 9.70 -39.55 -0.38 -1.48 16 4 C -0.11 -1.11 9.70 -39.61 -0.38 -1.50 16 5 C -0.08 -0.92 5.18 -104.43 -0.54 -1.47 16 6 C -0.12 -1.14 8.08 36.01 0.29 -0.85 16 7 C 0.15 1.86 3.43 -83.69 -0.29 1.57 16 8 N -0.58 -6.79 1.64 -106.39 -0.17 -6.96 16 9 C 0.52 7.72 6.94 -10.99 -0.08 7.64 16 10 O -0.52 -10.09 15.96 5.54 0.09 -10.00 16 11 C -0.14 -1.88 4.10 -27.88 -0.11 -2.00 16 12 C -0.10 -1.89 4.51 -26.73 -0.12 -2.01 16 13 C -0.11 -2.27 5.15 -26.73 -0.14 -2.40 16 14 C 0.02 0.54 4.97 -27.88 -0.14 0.40 16 15 C -0.52 -15.09 9.11 -34.44 -0.31 -15.40 16 16 H 0.05 1.49 7.74 -52.49 -0.41 1.09 16 17 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 18 N -0.90 -27.73 13.29 55.43 0.74 -27.00 16 19 Si 0.89 22.01 29.54 -169.99 -5.02 16.99 16 20 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 21 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 22 H -0.28 -6.69 7.11 56.52 0.40 -6.28 16 23 C 0.13 1.11 3.15 -67.94 -0.21 0.90 16 24 C -0.16 -1.23 8.75 37.15 0.33 -0.91 16 25 C -0.17 -1.21 7.51 37.16 0.28 -0.93 16 26 C -0.10 -1.21 8.68 -39.39 -0.34 -1.56 16 27 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 28 H 0.07 0.39 8.08 -51.93 -0.42 -0.03 16 29 H 0.06 0.45 8.08 -51.93 -0.42 0.03 16 30 H 0.12 0.86 8.06 -52.49 -0.42 0.43 16 31 H 0.12 0.95 8.06 -52.48 -0.42 0.53 16 32 H 0.07 0.59 6.06 -51.93 -0.31 0.28 16 33 H 0.06 0.58 8.09 -51.93 -0.42 0.16 16 34 H 0.07 0.78 6.80 -51.93 -0.35 0.42 16 35 H 0.09 1.06 7.36 -51.93 -0.38 0.68 16 36 H 0.09 1.10 8.10 -51.93 -0.42 0.68 16 37 H 0.06 1.27 8.06 -51.93 -0.42 0.86 16 38 H 0.06 1.23 8.13 -51.93 -0.42 0.81 16 39 H 0.05 0.93 8.14 -51.93 -0.42 0.51 16 40 H 0.05 0.94 8.14 -51.93 -0.42 0.51 16 41 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 42 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 43 H 0.26 7.60 8.31 -40.82 -0.34 7.26 16 44 H 0.10 0.80 5.75 -51.93 -0.30 0.51 16 45 H 0.06 0.48 7.43 -51.93 -0.39 0.09 16 46 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 47 H 0.06 0.51 8.14 -51.93 -0.42 0.08 16 48 H 0.06 0.49 6.72 -51.93 -0.35 0.14 16 49 H 0.07 0.39 8.14 -51.93 -0.42 -0.04 16 50 H 0.06 0.49 6.35 -51.93 -0.33 0.16 16 51 H 0.12 1.36 8.06 -52.49 -0.42 0.94 16 LS Contribution 402.42 15.07 6.06 6.06 Total: -1.00 -34.36 402.42 -9.94 -44.30 By element: Atomic # 1 Polarization: 6.17 SS G_CDS: -9.13 Total: -2.96 kcal Atomic # 6 Polarization: -17.92 SS G_CDS: -2.51 Total: -20.43 kcal Atomic # 7 Polarization: -34.52 SS G_CDS: 0.56 Total: -33.96 kcal Atomic # 8 Polarization: -10.09 SS G_CDS: 0.09 Total: -10.00 kcal Atomic # 14 Polarization: 22.01 SS G_CDS: -5.02 Total: 16.99 kcal Total LS contribution 6.06 Total: 6.06 kcal Total: -34.36 -9.94 -44.30 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000588907462.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.571 kcal (2) G-P(sol) polarization free energy of solvation -34.356 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.785 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.941 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.298 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.727 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds