Wall clock time and date at job start Tue Mar 31 2020 11:34:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.38311 * 119.96002 * 2 1 4 4 C 1.38259 * 120.13596 * 180.02562 * 3 2 1 5 5 C 1.38132 * 120.07678 * 359.74716 * 4 3 2 6 6 C 1.50699 * 120.03925 * 180.25897 * 5 4 3 7 7 C 1.38862 * 119.92408 * 0.52669 * 5 4 3 8 8 N 1.39928 * 120.06623 * 179.74873 * 7 5 4 9 9 C 1.34773 * 119.99859 * 89.73143 * 8 7 5 10 10 O 1.21296 * 119.99943 * 5.00382 * 9 8 7 11 11 C 1.50700 * 120.00052 * 185.01221 * 9 8 7 12 12 C 1.53004 * 109.47105 * 184.05119 * 11 9 8 13 13 C 1.52995 * 109.46880 * 179.97438 * 12 11 9 14 14 C 1.53007 * 109.47218 * 180.02562 * 13 12 11 15 15 C 1.50700 * 109.47073 * 180.02562 * 14 13 12 16 16 H 1.07998 * 120.00464 * 359.97438 * 15 14 13 17 17 C 1.37881 * 119.99680 * 180.02562 * 15 14 13 18 18 N 1.31515 * 120.00069 * 359.97438 * 17 15 14 19 19 Si 1.86795 * 120.00010 * 179.97438 * 17 15 14 20 20 H 1.48501 * 109.47159 * 59.99703 * 19 17 15 21 21 H 1.48497 * 109.47363 * 179.97438 * 19 17 15 22 22 H 1.48501 * 109.47017 * 300.00121 * 19 17 15 23 23 C 1.46499 * 119.99918 * 269.72226 * 8 7 5 24 24 C 1.52994 * 109.47097 * 299.43923 * 23 8 7 25 25 C 1.52997 * 109.46961 * 59.44281 * 23 8 7 26 26 C 1.38085 * 119.96650 * 180.02562 * 2 1 3 27 27 H 1.09003 * 109.47013 * 269.97226 * 1 2 3 28 28 H 1.09002 * 109.47474 * 29.97519 * 1 2 3 29 29 H 1.09004 * 109.47191 * 149.98081 * 1 2 3 30 30 H 1.07991 * 119.93097 * 0.02562 * 3 2 1 31 31 H 1.08003 * 119.95939 * 179.97438 * 4 3 2 32 32 H 1.09000 * 109.46603 * 270.26837 * 6 5 4 33 33 H 1.08998 * 109.47491 * 30.27115 * 6 5 4 34 34 H 1.08998 * 109.47084 * 150.27546 * 6 5 4 35 35 H 1.09005 * 109.46519 * 304.04952 * 11 9 8 36 36 H 1.08995 * 109.47071 * 64.05015 * 11 9 8 37 37 H 1.08993 * 109.47106 * 299.99629 * 12 11 9 38 38 H 1.09006 * 109.46894 * 59.99672 * 12 11 9 39 39 H 1.09003 * 109.47838 * 300.00373 * 13 12 11 40 40 H 1.09006 * 109.47103 * 60.00439 * 13 12 11 41 41 H 1.09003 * 109.46388 * 300.00347 * 14 13 12 42 42 H 1.08997 * 109.46874 * 60.00022 * 14 13 12 43 43 H 0.96999 * 120.00188 * 179.97438 * 18 17 15 44 44 H 1.09000 * 109.46572 * 179.44378 * 23 8 7 45 45 H 1.09004 * 109.47264 * 65.49623 * 24 23 8 46 46 H 1.09000 * 109.47457 * 185.49219 * 24 23 8 47 47 H 1.09002 * 109.47888 * 305.49323 * 24 23 8 48 48 H 1.08994 * 109.47634 * 61.58183 * 25 23 8 49 49 H 1.08997 * 109.46938 * 181.58711 * 25 23 8 50 50 H 1.09004 * 109.47140 * 301.57849 * 25 23 8 51 51 H 1.07999 * 120.03911 * 0.02562 * 26 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1977 1.1983 0.0000 4 6 3.5803 1.2025 -0.0005 5 6 4.2762 0.0093 0.0042 6 6 5.7832 0.0150 0.0095 7 6 3.5857 -1.1954 -0.0016 8 7 4.2877 -2.4058 -0.0021 9 6 4.6261 -2.9890 1.1648 10 8 4.2446 -2.5136 2.2135 11 6 5.4786 -4.2317 1.1668 12 6 5.6304 -4.7438 2.6006 13 6 6.4953 -6.0058 2.6024 14 6 6.6466 -6.5183 4.0361 15 6 7.4992 -7.7610 4.0380 16 1 7.8933 -8.1469 3.1095 17 6 7.7751 -8.4059 5.2251 18 7 7.2948 -7.9362 6.3557 19 14 8.8312 -9.9466 5.2274 20 1 10.1712 -9.6291 4.6717 21 1 8.9782 -10.4440 6.6189 22 1 8.1844 -10.9913 4.3935 23 6 4.6546 -3.0392 -1.2711 24 6 3.3875 -3.3587 -2.0667 25 6 5.5380 -2.0870 -2.0796 26 6 2.1967 -1.1963 -0.0005 27 1 -0.3633 -0.0005 1.0277 28 1 -0.3634 0.8902 -0.5134 29 1 -0.3634 -0.8898 -0.5141 30 1 1.6560 2.1325 0.0004 31 1 4.1168 2.1399 -0.0010 32 1 6.1500 0.0192 -1.0169 33 1 6.1414 0.9048 0.5271 34 1 6.1480 -0.8751 0.5220 35 1 5.0037 -4.9990 0.5553 36 1 6.4618 -3.9984 0.7583 37 1 6.1052 -3.9766 3.2120 38 1 4.6470 -4.9771 3.0091 39 1 6.0203 -6.7730 1.9910 40 1 7.4787 -5.7729 2.1938 41 1 7.1216 -5.7513 4.6479 42 1 5.6632 -6.7513 4.4443 43 1 7.4886 -8.3901 7.1907 44 1 5.2009 -3.9612 -1.0723 45 1 2.8921 -2.4299 -2.3495 46 1 3.6532 -3.9166 -2.9647 47 1 2.7142 -3.9573 -1.4531 48 1 6.4536 -1.8816 -1.5250 49 1 5.7879 -2.5469 -3.0357 50 1 5.0020 -1.1541 -2.2543 51 1 1.6568 -2.1316 -0.0014 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000588907462.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:34:31 Heat of formation + Delta-G solvation = -57.727515 kcal Electronic energy + Delta-G solvation = -26867.286885 eV Core-core repulsion = 23343.697007 eV Total energy + Delta-G solvation = -3523.589878 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 317.210 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -41.95022 -39.84208 -37.68048 -36.66073 -34.77794 -34.53623 -33.07097 -31.87889 -30.58522 -30.20682 -27.95723 -27.55988 -25.78095 -24.71248 -23.45301 -22.86151 -22.10114 -21.58492 -19.62157 -18.44069 -18.14175 -17.54271 -17.33687 -16.61014 -16.51437 -16.47408 -15.51309 -15.34712 -15.07600 -14.87873 -14.64194 -14.52569 -14.25236 -14.13263 -13.88100 -13.71113 -13.65897 -13.54384 -13.36216 -13.03750 -12.95902 -12.85165 -12.78694 -12.49846 -12.38847 -12.28955 -12.22205 -12.18988 -12.12842 -11.94844 -11.77626 -11.39394 -11.32789 -11.15403 -10.82951 -10.54409 -9.91756 -9.77213 -9.35387 -8.18379 -6.30812 0.28752 0.39327 1.40371 1.44610 1.52427 1.53472 1.89071 2.42196 2.68573 3.14223 3.59874 3.81718 3.87536 3.89559 3.98135 4.07217 4.08057 4.14349 4.26095 4.26796 4.35160 4.52691 4.56067 4.64215 4.68345 4.71564 4.76648 4.77207 4.78460 4.79398 4.83652 4.85042 4.92699 4.98026 5.03710 5.08316 5.15392 5.25175 5.29605 5.31949 5.33210 5.35238 5.43141 5.55192 5.55944 5.63211 5.72026 5.77253 5.87626 6.11797 6.25032 6.29167 6.87516 7.16380 7.38818 8.93808 Molecular weight = 317.21amu Principal moments of inertia in cm(-1) A = 0.020415 B = 0.002423 C = 0.002357 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1371.228650 B =11553.195008 C =11874.199531 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 C -0.096 4.096 3 C -0.118 4.118 4 C -0.117 4.117 5 C -0.099 4.099 6 C -0.110 4.110 7 C 0.131 3.869 8 N -0.564 5.564 9 C 0.513 3.487 10 O -0.578 6.578 11 C -0.126 4.126 12 C -0.094 4.094 13 C -0.094 4.094 14 C 0.019 3.981 15 C -0.542 4.542 16 H 0.067 0.933 17 C -0.007 4.007 18 N -0.939 5.939 19 Si 0.970 3.030 20 H -0.264 1.264 21 H -0.286 1.286 22 H -0.264 1.264 23 C 0.119 3.881 24 C -0.158 4.158 25 C -0.163 4.163 26 C -0.124 4.124 27 H 0.069 0.931 28 H 0.085 0.915 29 H 0.069 0.931 30 H 0.148 0.852 31 H 0.146 0.854 32 H 0.093 0.907 33 H 0.071 0.929 34 H 0.045 0.955 35 H 0.119 0.881 36 H 0.120 0.880 37 H 0.041 0.959 38 H 0.041 0.959 39 H 0.062 0.938 40 H 0.062 0.938 41 H -0.017 1.017 42 H -0.017 1.017 43 H 0.263 0.737 44 H 0.114 0.886 45 H 0.054 0.946 46 H 0.092 0.908 47 H 0.050 0.950 48 H 0.063 0.937 49 H 0.090 0.910 50 H 0.055 0.945 51 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.346 18.457 -24.493 32.061 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.097 4.097 3 C -0.136 4.136 4 C -0.136 4.136 5 C -0.101 4.101 6 C -0.167 4.167 7 C 0.041 3.959 8 N -0.295 5.295 9 C 0.305 3.695 10 O -0.456 6.456 11 C -0.165 4.165 12 C -0.133 4.133 13 C -0.131 4.131 14 C -0.018 4.018 15 C -0.579 4.579 16 H 0.086 0.914 17 C -0.205 4.205 18 N -0.579 5.579 19 Si 0.794 3.206 20 H -0.188 1.188 21 H -0.211 1.211 22 H -0.188 1.188 23 C 0.019 3.981 24 C -0.216 4.216 25 C -0.220 4.220 26 C -0.143 4.143 27 H 0.088 0.912 28 H 0.104 0.896 29 H 0.088 0.912 30 H 0.166 0.834 31 H 0.164 0.836 32 H 0.112 0.888 33 H 0.090 0.910 34 H 0.064 0.936 35 H 0.137 0.863 36 H 0.138 0.862 37 H 0.060 0.940 38 H 0.060 0.940 39 H 0.081 0.919 40 H 0.081 0.919 41 H 0.002 0.998 42 H 0.002 0.998 43 H 0.071 0.929 44 H 0.132 0.868 45 H 0.073 0.927 46 H 0.111 0.889 47 H 0.069 0.931 48 H 0.082 0.918 49 H 0.108 0.892 50 H 0.074 0.926 51 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges -9.537 18.645 -23.778 31.686 hybrid contribution 0.263 -0.775 0.965 1.265 sum -9.275 17.871 -22.813 30.428 Atomic orbital electron populations 1.20810 0.89344 1.03817 1.02726 1.20112 0.97485 0.92484 0.99597 1.21371 0.94195 0.98253 0.99792 1.21223 0.94565 0.97544 1.00236 1.20318 0.97150 0.92565 1.00024 1.20907 0.90383 1.02184 1.03224 1.17479 0.90498 0.85428 1.02475 1.45725 1.55818 1.21129 1.06793 1.21385 0.79805 0.85787 0.82565 1.90708 1.55780 1.66105 1.33027 1.21740 1.01203 0.94496 0.99080 1.21246 0.99434 0.97119 0.95459 1.21434 0.98934 0.95523 0.97211 1.19046 0.94608 0.94727 0.93397 1.21722 1.31576 1.11011 0.93633 0.91449 1.26110 0.97632 1.01516 0.95197 1.70131 1.46914 1.42099 0.98790 0.85428 0.79218 0.78805 0.77156 1.18848 1.21139 1.18830 1.21650 0.97130 0.97395 0.81963 1.22151 0.96773 1.01994 1.00703 1.22331 0.99336 0.99569 1.00793 1.21294 0.93234 0.98470 1.01297 0.91218 0.89569 0.91229 0.83411 0.83641 0.88820 0.91042 0.93584 0.86312 0.86209 0.93965 0.94046 0.91897 0.91924 0.99839 0.99818 0.92860 0.86823 0.92724 0.88935 0.93100 0.91803 0.89155 0.92567 0.86745 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.53 10.01 71.24 0.71 -0.82 16 2 C -0.10 -1.87 5.88 -19.88 -0.12 -1.99 16 3 C -0.12 -2.05 9.70 22.29 0.22 -1.83 16 4 C -0.12 -2.16 9.70 22.25 0.22 -1.95 16 5 C -0.10 -2.19 5.18 -19.74 -0.10 -2.29 16 6 C -0.11 -2.10 8.08 71.24 0.58 -1.53 16 7 C 0.13 3.19 3.43 38.16 0.13 3.32 16 8 N -0.56 -13.10 1.64 -608.88 -1.00 -14.09 16 9 C 0.51 15.59 6.94 87.66 0.61 16.20 16 10 O -0.58 -23.62 15.96 -3.08 -0.05 -23.66 16 11 C -0.13 -3.34 4.10 29.85 0.12 -3.21 16 12 C -0.09 -3.54 4.51 30.59 0.14 -3.40 16 13 C -0.09 -3.86 5.15 30.60 0.16 -3.71 16 14 C 0.02 1.08 4.97 29.85 0.15 1.23 16 15 C -0.54 -31.60 9.11 25.60 0.23 -31.36 16 16 H 0.07 3.66 7.74 -2.91 -0.02 3.64 16 17 C -0.01 -0.44 5.46 84.66 0.46 0.02 16 18 N -0.94 -59.71 13.29 21.45 0.28 -59.42 16 19 Si 0.97 44.99 29.54 68.60 2.03 47.02 16 20 H -0.26 -11.60 7.11 99.48 0.71 -10.89 16 21 H -0.29 -13.06 7.11 99.48 0.71 -12.36 16 22 H -0.26 -11.58 7.11 99.48 0.71 -10.88 16 23 C 0.12 1.84 3.15 44.99 0.14 1.98 16 24 C -0.16 -2.12 8.75 71.98 0.63 -1.49 16 25 C -0.16 -1.97 7.51 71.98 0.54 -1.43 16 26 C -0.12 -2.91 8.68 22.39 0.19 -2.71 16 27 H 0.07 0.99 8.14 -2.39 -0.02 0.97 16 28 H 0.09 0.83 8.08 -2.39 -0.02 0.82 16 29 H 0.07 0.89 8.08 -2.38 -0.02 0.87 16 30 H 0.15 1.70 8.06 -2.92 -0.02 1.68 16 31 H 0.15 1.93 8.06 -2.91 -0.02 1.91 16 32 H 0.09 1.35 6.06 -2.39 -0.01 1.34 16 33 H 0.07 1.23 8.09 -2.39 -0.02 1.21 16 34 H 0.05 1.06 6.80 -2.39 -0.02 1.05 16 35 H 0.12 2.49 7.36 -2.38 -0.02 2.48 16 36 H 0.12 2.55 8.10 -2.39 -0.02 2.53 16 37 H 0.04 1.75 8.06 -2.39 -0.02 1.73 16 38 H 0.04 1.70 8.13 -2.38 -0.02 1.68 16 39 H 0.06 2.40 8.14 -2.39 -0.02 2.38 16 40 H 0.06 2.40 8.14 -2.38 -0.02 2.38 16 41 H -0.02 -1.03 8.14 -2.39 -0.02 -1.05 16 42 H -0.02 -1.01 8.14 -2.39 -0.02 -1.03 16 43 H 0.26 15.68 8.31 -92.71 -0.77 14.91 16 44 H 0.11 1.47 5.75 -2.39 -0.01 1.45 16 45 H 0.05 0.80 7.43 -2.39 -0.02 0.79 16 46 H 0.09 0.82 8.14 -2.39 -0.02 0.80 16 47 H 0.05 0.79 8.14 -2.39 -0.02 0.77 16 48 H 0.06 0.81 6.72 -2.39 -0.02 0.79 16 49 H 0.09 0.72 8.14 -2.39 -0.02 0.70 16 50 H 0.06 0.77 6.35 -2.39 -0.02 0.76 16 51 H 0.11 2.70 8.06 -2.91 -0.02 2.68 16 Total: -1.00 -78.18 402.42 7.15 -71.04 By element: Atomic # 1 Polarization: 13.22 SS G_CDS: 0.88 Total: 14.09 kcal Atomic # 6 Polarization: -39.98 SS G_CDS: 5.01 Total: -34.97 kcal Atomic # 7 Polarization: -72.80 SS G_CDS: -0.71 Total: -73.51 kcal Atomic # 8 Polarization: -23.62 SS G_CDS: -0.05 Total: -23.66 kcal Atomic # 14 Polarization: 44.99 SS G_CDS: 2.03 Total: 47.02 kcal Total: -78.18 7.15 -71.04 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000588907462.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.309 kcal (2) G-P(sol) polarization free energy of solvation -78.185 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.876 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.148 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.037 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.728 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds