Wall clock time and date at job start Tue Mar 31 2020 12:24:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53005 * 109.47424 * 2 1 4 4 C 1.52997 * 109.47580 * 120.00368 * 2 1 3 5 5 C 1.52995 * 109.47085 * 300.00017 * 4 2 1 6 6 C 1.50707 * 109.47301 * 179.97438 * 5 4 2 7 7 C 1.38238 * 119.99792 * 90.00016 * 6 5 4 8 8 C 1.38235 * 119.99712 * 179.97438 * 7 6 5 9 9 C 1.38234 * 120.00220 * 359.97124 * 8 7 6 10 10 C 1.38233 * 120.00037 * 0.28719 * 9 8 7 11 11 C 1.38234 * 120.00179 * 269.97953 * 6 5 4 12 12 N 1.46509 * 109.47188 * 240.00572 * 2 1 3 13 13 C 1.34773 * 119.99780 * 59.99281 * 12 2 1 14 14 O 1.21282 * 119.99969 * 0.02562 * 13 12 2 15 15 C 1.50698 * 119.99783 * 180.02562 * 13 12 2 16 16 C 1.52997 * 109.47027 * 180.02562 * 15 13 12 17 17 C 1.53004 * 109.46958 * 180.02562 * 16 15 13 18 18 C 1.53007 * 109.46960 * 180.02562 * 17 16 15 19 19 C 1.50698 * 109.47029 * 179.97438 * 18 17 16 20 20 H 1.08004 * 119.99856 * 359.97438 * 19 18 17 21 21 C 1.37875 * 120.00302 * 179.97438 * 19 18 17 22 22 N 1.31512 * 120.00517 * 180.02562 * 21 19 18 23 23 Si 1.86801 * 119.99575 * 359.97438 * 21 19 18 24 24 H 1.48506 * 109.46906 * 90.00094 * 23 21 19 25 25 H 1.48498 * 109.47281 * 209.99970 * 23 21 19 26 26 H 1.48496 * 109.47572 * 330.00231 * 23 21 19 27 27 H 1.09007 * 109.46674 * 299.99445 * 1 2 3 28 28 H 1.08992 * 109.47587 * 59.99427 * 1 2 3 29 29 H 1.09004 * 109.47155 * 179.97438 * 1 2 3 30 30 H 1.08995 * 109.47173 * 180.02562 * 3 2 1 31 31 H 1.08992 * 109.47206 * 300.00806 * 3 2 1 32 32 H 1.09007 * 109.46290 * 60.00313 * 3 2 1 33 33 H 1.08995 * 109.47671 * 179.97438 * 4 2 1 34 34 H 1.09004 * 109.46984 * 59.99764 * 4 2 1 35 35 H 1.09005 * 109.47610 * 59.99944 * 5 4 2 36 36 H 1.09000 * 109.47256 * 299.99285 * 5 4 2 37 37 H 1.08005 * 120.00068 * 359.97438 * 7 6 5 38 38 H 1.07999 * 119.99770 * 179.97438 * 8 7 6 39 39 H 1.08002 * 119.99744 * 180.02562 * 9 8 7 40 40 H 1.07998 * 120.00395 * 179.72811 * 10 9 8 41 41 H 1.07999 * 119.99968 * 359.97438 * 11 6 5 42 42 H 0.96998 * 119.99802 * 240.00362 * 12 2 1 43 43 H 1.09003 * 109.46972 * 300.00468 * 15 13 12 44 44 H 1.09004 * 109.47012 * 60.00413 * 15 13 12 45 45 H 1.09003 * 109.47204 * 299.99809 * 16 15 13 46 46 H 1.08991 * 109.47552 * 60.00288 * 16 15 13 47 47 H 1.09000 * 109.46915 * 299.99263 * 17 16 15 48 48 H 1.08992 * 109.47784 * 59.99875 * 17 16 15 49 49 H 1.09000 * 109.46700 * 299.99389 * 18 17 16 50 50 H 1.09000 * 109.46819 * 59.99651 * 18 17 16 51 51 H 0.96996 * 120.00073 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7213 1.2491 5 6 1.5301 -0.0002 2.4984 6 6 2.0320 -0.7110 3.7289 7 6 3.2400 -0.3461 4.2935 8 6 3.7001 -0.9977 5.4224 9 6 2.9521 -2.0138 5.9871 10 6 1.7468 -2.3823 5.4194 11 6 1.2844 -1.7276 4.2932 12 7 2.0183 -0.6905 -1.1963 13 6 1.6926 -0.2300 -2.4203 14 8 0.9956 0.7563 -2.5315 15 6 2.1945 -0.9406 -3.6508 16 6 1.6850 -0.2189 -4.9000 17 6 2.1940 -0.9408 -6.1493 18 6 1.6850 -0.2186 -7.3985 19 6 2.1868 -0.9292 -8.6290 20 1 2.8072 -1.8078 -8.5300 21 6 1.8541 -0.4579 -9.8812 22 7 2.2916 -1.0783 -10.9551 23 14 0.7806 1.0612 -10.0525 24 1 1.6395 2.2718 -10.0975 25 1 -0.0112 0.9692 -11.3054 26 1 -0.1399 1.1504 -8.8907 27 1 -0.3633 0.5138 0.8901 28 1 -0.3634 0.5139 -0.8898 29 1 -0.3634 -1.0277 -0.0005 30 1 3.1300 1.4425 -0.0005 31 1 1.6767 1.9564 -0.8898 32 1 1.6767 1.9563 0.8901 33 1 3.1300 -0.7217 1.2489 34 1 1.6767 -1.7490 1.2491 35 1 0.4401 -0.0002 2.4986 36 1 1.8935 1.0275 2.4985 37 1 3.8242 0.4481 3.8525 38 1 4.6440 -0.7129 5.8633 39 1 3.3114 -2.5226 6.8694 40 1 1.1644 -3.1791 5.8580 41 1 0.3403 -2.0121 3.8525 42 1 2.5759 -1.4792 -1.1073 43 1 3.2845 -0.9410 -3.6510 44 1 1.8307 -1.9682 -3.6507 45 1 0.5949 -0.2182 -4.9000 46 1 2.0489 0.8084 -4.8999 47 1 3.2840 -0.9417 -6.1495 48 1 1.8297 -1.9680 -6.1493 49 1 0.5950 -0.2172 -7.3985 50 1 2.0497 0.8085 -7.3983 51 1 2.0572 -0.7469 -11.8360 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000588911947.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:24:50 Heat of formation + Delta-G solvation = -51.349830 kcal Electronic energy + Delta-G solvation = -25402.827544 eV Core-core repulsion = 21879.514223 eV Total energy + Delta-G solvation = -3523.313321 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 317.210 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -40.40399 -39.61444 -37.32926 -34.97697 -33.85246 -32.62891 -31.75181 -31.29477 -29.91462 -28.60843 -27.49096 -26.03922 -24.92046 -22.97536 -22.43160 -21.45139 -20.09403 -20.00101 -19.54140 -17.38038 -16.98926 -16.59643 -16.06345 -15.82517 -15.69026 -15.35094 -14.66936 -14.28406 -14.18630 -14.15959 -13.83297 -13.79825 -13.43402 -13.24257 -13.15453 -12.63311 -12.53602 -12.43495 -12.24536 -11.90396 -11.82902 -11.73342 -11.61419 -11.54161 -11.39642 -11.09234 -10.97345 -10.96576 -10.70627 -10.50832 -9.86537 -9.69962 -9.61980 -9.34894 -9.33226 -9.15378 -9.10664 -9.04901 -8.47924 -5.99127 -3.96502 0.93797 0.98997 2.73034 3.06197 3.36400 3.39778 3.43341 3.49546 4.18483 4.37567 4.51434 4.57733 4.60098 4.63258 4.73215 4.75076 4.90900 4.94400 5.03200 5.13293 5.19349 5.23073 5.27803 5.33345 5.36592 5.50420 5.51238 5.53325 5.60144 5.66835 5.67846 5.75575 5.76274 5.85526 6.05541 6.06170 6.11229 6.16531 6.17774 6.18876 6.25980 6.42916 6.49961 6.60239 6.71302 6.85257 7.01575 7.40323 7.49464 7.53159 7.86500 8.29765 8.59990 9.05918 9.64349 11.14389 Molecular weight = 317.21amu Principal moments of inertia in cm(-1) A = 0.035803 B = 0.001702 C = 0.001674 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 781.861751 B =16444.259339 C =16719.202218 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.174 3.826 3 C -0.167 4.167 4 C -0.113 4.113 5 C -0.082 4.082 6 C -0.079 4.079 7 C -0.118 4.118 8 C -0.119 4.119 9 C -0.127 4.127 10 C -0.119 4.119 11 C -0.118 4.118 12 N -0.732 5.732 13 C 0.515 3.485 14 O -0.533 6.533 15 C -0.141 4.141 16 C -0.105 4.105 17 C -0.103 4.103 18 C -0.015 4.015 19 C -0.520 4.520 20 H 0.071 0.929 21 C 0.065 3.935 22 N -0.906 5.906 23 Si 0.880 3.120 24 H -0.277 1.277 25 H -0.288 1.288 26 H -0.264 1.264 27 H 0.063 0.937 28 H 0.080 0.920 29 H 0.053 0.947 30 H 0.053 0.947 31 H 0.080 0.920 32 H 0.063 0.937 33 H 0.070 0.930 34 H 0.070 0.930 35 H 0.079 0.921 36 H 0.079 0.921 37 H 0.121 0.879 38 H 0.121 0.879 39 H 0.120 0.880 40 H 0.121 0.879 41 H 0.121 0.879 42 H 0.398 0.602 43 H 0.090 0.910 44 H 0.090 0.910 45 H 0.063 0.937 46 H 0.063 0.937 47 H 0.052 0.948 48 H 0.052 0.948 49 H 0.015 0.985 50 H 0.011 0.989 51 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.573 -0.858 37.067 37.081 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.088 3.912 3 C -0.224 4.224 4 C -0.151 4.151 5 C -0.119 4.119 6 C -0.079 4.079 7 C -0.136 4.136 8 C -0.137 4.137 9 C -0.145 4.145 10 C -0.137 4.137 11 C -0.136 4.136 12 N -0.385 5.385 13 C 0.303 3.697 14 O -0.409 6.409 15 C -0.180 4.180 16 C -0.143 4.143 17 C -0.141 4.141 18 C -0.053 4.053 19 C -0.558 4.558 20 H 0.089 0.911 21 C -0.136 4.136 22 N -0.545 5.545 23 Si 0.707 3.293 24 H -0.203 1.203 25 H -0.215 1.215 26 H -0.189 1.189 27 H 0.082 0.918 28 H 0.099 0.901 29 H 0.072 0.928 30 H 0.072 0.928 31 H 0.099 0.901 32 H 0.082 0.918 33 H 0.088 0.912 34 H 0.088 0.912 35 H 0.097 0.903 36 H 0.097 0.903 37 H 0.139 0.861 38 H 0.139 0.861 39 H 0.138 0.862 40 H 0.139 0.861 41 H 0.139 0.861 42 H 0.232 0.768 43 H 0.108 0.892 44 H 0.109 0.891 45 H 0.082 0.918 46 H 0.082 0.918 47 H 0.071 0.929 48 H 0.071 0.929 49 H 0.034 0.966 50 H 0.029 0.971 51 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 0.053 -0.130 36.779 36.779 hybrid contribution -0.136 0.236 -0.099 0.290 sum -0.083 0.106 36.680 36.680 Atomic orbital electron populations 1.22288 0.94362 1.02192 1.03604 1.20261 0.94370 0.92575 0.83991 1.22288 1.00879 0.95674 1.03603 1.21793 1.01259 0.99574 0.92513 1.20723 1.01429 0.99081 0.90672 1.19920 0.94843 0.96536 0.96640 1.21092 0.95922 1.00242 0.96301 1.21168 0.99809 0.96435 0.96268 1.21163 0.95290 0.97845 1.00194 1.21169 0.96440 0.99787 0.96282 1.21091 0.99967 0.96162 0.96337 1.46248 1.54567 1.32236 1.05441 1.20988 0.79641 0.84510 0.84553 1.90631 1.37371 1.26178 1.86730 1.21788 1.02450 1.00835 0.92971 1.21462 1.01140 0.99427 0.92250 1.21481 0.99935 0.99001 0.93647 1.19576 0.96320 0.95798 0.93577 1.21195 1.31919 1.13364 0.89280 0.91123 1.25038 0.95731 0.96926 0.95891 1.69919 1.46106 1.40668 0.97853 0.86775 0.81271 0.83677 0.77582 1.20332 1.21457 1.18904 0.91844 0.90130 0.92792 0.92792 0.90129 0.91847 0.91150 0.91155 0.90275 0.90273 0.86080 0.86136 0.86233 0.86134 0.86081 0.76806 0.89151 0.89146 0.91849 0.91850 0.92917 0.92884 0.96635 0.97077 0.92836 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.57 8.05 37.16 0.30 -1.27 16 2 C 0.17 1.49 0.83 -131.82 -0.11 1.38 16 3 C -0.17 -1.57 8.05 37.16 0.30 -1.27 16 4 C -0.11 -0.72 4.37 -26.74 -0.12 -0.84 16 5 C -0.08 -0.49 4.64 -27.88 -0.13 -0.62 16 6 C -0.08 -0.54 5.13 -104.62 -0.54 -1.07 16 7 C -0.12 -0.78 9.70 -39.58 -0.38 -1.17 16 8 C -0.12 -0.75 10.05 -39.58 -0.40 -1.15 16 9 C -0.13 -0.79 10.05 -39.58 -0.40 -1.18 16 10 C -0.12 -0.75 10.05 -39.58 -0.40 -1.15 16 11 C -0.12 -0.78 9.70 -39.58 -0.38 -1.17 16 12 N -0.73 -6.85 5.11 -47.60 -0.24 -7.09 16 13 C 0.52 6.61 7.25 -10.99 -0.08 6.53 16 14 O -0.53 -8.70 12.19 5.56 0.07 -8.63 16 15 C -0.14 -1.76 5.70 -27.89 -0.16 -1.92 16 16 C -0.10 -1.76 4.50 -26.73 -0.12 -1.88 16 17 C -0.10 -2.05 5.15 -26.73 -0.14 -2.18 16 18 C -0.02 -0.38 4.04 -27.88 -0.11 -0.49 16 19 C -0.52 -15.23 9.66 -34.44 -0.33 -15.56 16 20 H 0.07 2.20 7.99 -52.48 -0.42 1.78 16 21 C 0.06 1.94 5.47 -17.82 -0.10 1.84 16 22 N -0.91 -28.52 13.96 55.43 0.77 -27.75 16 23 Si 0.88 22.49 27.47 -169.99 -4.67 17.82 16 24 H -0.28 -6.97 7.11 56.52 0.40 -6.56 16 25 H -0.29 -7.26 7.11 56.52 0.40 -6.86 16 26 H -0.26 -6.57 6.54 56.52 0.37 -6.20 16 27 H 0.06 0.49 6.43 -51.93 -0.33 0.16 16 28 H 0.08 1.01 6.17 -51.93 -0.32 0.69 16 29 H 0.05 0.49 8.14 -51.93 -0.42 0.06 16 30 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 31 H 0.08 1.01 6.17 -51.93 -0.32 0.69 16 32 H 0.06 0.49 6.43 -51.93 -0.33 0.16 16 33 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 34 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 35 H 0.08 0.46 6.37 -51.93 -0.33 0.12 16 36 H 0.08 0.46 6.37 -51.93 -0.33 0.12 16 37 H 0.12 0.66 8.06 -52.48 -0.42 0.23 16 38 H 0.12 0.55 8.06 -52.49 -0.42 0.13 16 39 H 0.12 0.52 8.06 -52.49 -0.42 0.10 16 40 H 0.12 0.55 8.06 -52.49 -0.42 0.13 16 41 H 0.12 0.66 8.06 -52.49 -0.42 0.23 16 42 H 0.40 2.72 8.47 -40.82 -0.35 2.38 16 43 H 0.09 0.99 8.14 -51.93 -0.42 0.57 16 44 H 0.09 0.99 8.14 -51.93 -0.42 0.57 16 45 H 0.06 1.13 8.10 -51.93 -0.42 0.71 16 46 H 0.06 1.12 8.10 -51.93 -0.42 0.70 16 47 H 0.05 1.02 8.14 -51.93 -0.42 0.60 16 48 H 0.05 1.03 8.14 -51.93 -0.42 0.61 16 49 H 0.02 0.39 7.20 -51.93 -0.37 0.01 16 50 H 0.01 0.27 7.57 -51.93 -0.39 -0.12 16 51 H 0.26 7.71 8.31 -40.82 -0.34 7.37 16 LS Contribution 400.97 15.07 6.04 6.04 Total: -1.00 -33.98 400.97 -10.33 -44.31 By element: Atomic # 1 Polarization: 7.49 SS G_CDS: -9.01 Total: -1.52 kcal Atomic # 6 Polarization: -19.88 SS G_CDS: -3.30 Total: -23.17 kcal Atomic # 7 Polarization: -35.37 SS G_CDS: 0.53 Total: -34.84 kcal Atomic # 8 Polarization: -8.70 SS G_CDS: 0.07 Total: -8.63 kcal Atomic # 14 Polarization: 22.49 SS G_CDS: -4.67 Total: 17.82 kcal Total LS contribution 6.04 Total: 6.04 kcal Total: -33.98 -10.33 -44.31 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000588911947.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.043 kcal (2) G-P(sol) polarization free energy of solvation -33.976 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.019 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.331 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.307 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.350 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds