Wall clock time and date at job start Tue Mar 31 2020 12:24:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53005 * 109.47424 * 2 1 4 4 C 1.52997 * 109.47580 * 120.00368 * 2 1 3 5 5 C 1.52995 * 109.47085 * 300.00017 * 4 2 1 6 6 C 1.50707 * 109.47301 * 179.97438 * 5 4 2 7 7 C 1.38238 * 119.99792 * 90.00016 * 6 5 4 8 8 C 1.38235 * 119.99712 * 179.97438 * 7 6 5 9 9 C 1.38234 * 120.00220 * 359.97124 * 8 7 6 10 10 C 1.38233 * 120.00037 * 0.28719 * 9 8 7 11 11 C 1.38234 * 120.00179 * 269.97953 * 6 5 4 12 12 N 1.46509 * 109.47188 * 240.00572 * 2 1 3 13 13 C 1.34773 * 119.99780 * 59.99281 * 12 2 1 14 14 O 1.21282 * 119.99969 * 0.02562 * 13 12 2 15 15 C 1.50698 * 119.99783 * 180.02562 * 13 12 2 16 16 C 1.52997 * 109.47027 * 180.02562 * 15 13 12 17 17 C 1.53004 * 109.46958 * 180.02562 * 16 15 13 18 18 C 1.53007 * 109.46960 * 180.02562 * 17 16 15 19 19 C 1.50698 * 109.47029 * 179.97438 * 18 17 16 20 20 H 1.08004 * 119.99856 * 359.97438 * 19 18 17 21 21 C 1.37875 * 120.00302 * 179.97438 * 19 18 17 22 22 N 1.31512 * 120.00517 * 180.02562 * 21 19 18 23 23 Si 1.86801 * 119.99575 * 359.97438 * 21 19 18 24 24 H 1.48506 * 109.46906 * 90.00094 * 23 21 19 25 25 H 1.48498 * 109.47281 * 209.99970 * 23 21 19 26 26 H 1.48496 * 109.47572 * 330.00231 * 23 21 19 27 27 H 1.09007 * 109.46674 * 299.99445 * 1 2 3 28 28 H 1.08992 * 109.47587 * 59.99427 * 1 2 3 29 29 H 1.09004 * 109.47155 * 179.97438 * 1 2 3 30 30 H 1.08995 * 109.47173 * 180.02562 * 3 2 1 31 31 H 1.08992 * 109.47206 * 300.00806 * 3 2 1 32 32 H 1.09007 * 109.46290 * 60.00313 * 3 2 1 33 33 H 1.08995 * 109.47671 * 179.97438 * 4 2 1 34 34 H 1.09004 * 109.46984 * 59.99764 * 4 2 1 35 35 H 1.09005 * 109.47610 * 59.99944 * 5 4 2 36 36 H 1.09000 * 109.47256 * 299.99285 * 5 4 2 37 37 H 1.08005 * 120.00068 * 359.97438 * 7 6 5 38 38 H 1.07999 * 119.99770 * 179.97438 * 8 7 6 39 39 H 1.08002 * 119.99744 * 180.02562 * 9 8 7 40 40 H 1.07998 * 120.00395 * 179.72811 * 10 9 8 41 41 H 1.07999 * 119.99968 * 359.97438 * 11 6 5 42 42 H 0.96998 * 119.99802 * 240.00362 * 12 2 1 43 43 H 1.09003 * 109.46972 * 300.00468 * 15 13 12 44 44 H 1.09004 * 109.47012 * 60.00413 * 15 13 12 45 45 H 1.09003 * 109.47204 * 299.99809 * 16 15 13 46 46 H 1.08991 * 109.47552 * 60.00288 * 16 15 13 47 47 H 1.09000 * 109.46915 * 299.99263 * 17 16 15 48 48 H 1.08992 * 109.47784 * 59.99875 * 17 16 15 49 49 H 1.09000 * 109.46700 * 299.99389 * 18 17 16 50 50 H 1.09000 * 109.46819 * 59.99651 * 18 17 16 51 51 H 0.96996 * 120.00073 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7213 1.2491 5 6 1.5301 -0.0002 2.4984 6 6 2.0320 -0.7110 3.7289 7 6 3.2400 -0.3461 4.2935 8 6 3.7001 -0.9977 5.4224 9 6 2.9521 -2.0138 5.9871 10 6 1.7468 -2.3823 5.4194 11 6 1.2844 -1.7276 4.2932 12 7 2.0183 -0.6905 -1.1963 13 6 1.6926 -0.2300 -2.4203 14 8 0.9956 0.7563 -2.5315 15 6 2.1945 -0.9406 -3.6508 16 6 1.6850 -0.2189 -4.9000 17 6 2.1940 -0.9408 -6.1493 18 6 1.6850 -0.2186 -7.3985 19 6 2.1868 -0.9292 -8.6290 20 1 2.8072 -1.8078 -8.5300 21 6 1.8541 -0.4579 -9.8812 22 7 2.2916 -1.0783 -10.9551 23 14 0.7806 1.0612 -10.0525 24 1 1.6395 2.2718 -10.0975 25 1 -0.0112 0.9692 -11.3054 26 1 -0.1399 1.1504 -8.8907 27 1 -0.3633 0.5138 0.8901 28 1 -0.3634 0.5139 -0.8898 29 1 -0.3634 -1.0277 -0.0005 30 1 3.1300 1.4425 -0.0005 31 1 1.6767 1.9564 -0.8898 32 1 1.6767 1.9563 0.8901 33 1 3.1300 -0.7217 1.2489 34 1 1.6767 -1.7490 1.2491 35 1 0.4401 -0.0002 2.4986 36 1 1.8935 1.0275 2.4985 37 1 3.8242 0.4481 3.8525 38 1 4.6440 -0.7129 5.8633 39 1 3.3114 -2.5226 6.8694 40 1 1.1644 -3.1791 5.8580 41 1 0.3403 -2.0121 3.8525 42 1 2.5759 -1.4792 -1.1073 43 1 3.2845 -0.9410 -3.6510 44 1 1.8307 -1.9682 -3.6507 45 1 0.5949 -0.2182 -4.9000 46 1 2.0489 0.8084 -4.8999 47 1 3.2840 -0.9417 -6.1495 48 1 1.8297 -1.9680 -6.1493 49 1 0.5950 -0.2172 -7.3985 50 1 2.0497 0.8085 -7.3983 51 1 2.0572 -0.7469 -11.8360 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000588911947.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:24:50 Heat of formation + Delta-G solvation = -69.905395 kcal Electronic energy + Delta-G solvation = -25403.632174 eV Core-core repulsion = 21879.514223 eV Total energy + Delta-G solvation = -3524.117951 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 317.210 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -41.24409 -40.13189 -38.14318 -36.58296 -34.60815 -34.50468 -32.72276 -31.71894 -31.43547 -29.19737 -28.23769 -27.62726 -25.64026 -23.87980 -23.40578 -22.19401 -21.69044 -20.97618 -20.30650 -18.84617 -18.07612 -17.64102 -16.83646 -16.80445 -16.33255 -16.29542 -15.87331 -15.61097 -15.14239 -15.11551 -14.76104 -14.62433 -14.27224 -14.08599 -13.95883 -13.84590 -13.66405 -13.56317 -13.47381 -13.13864 -12.89767 -12.70861 -12.59696 -12.31445 -12.20837 -12.08831 -12.03787 -11.96275 -11.75354 -11.57183 -11.49255 -11.45466 -11.33527 -11.24999 -10.76233 -10.47109 -10.00576 -9.77545 -9.53840 -8.29904 -6.33068 0.48995 0.54566 1.34495 1.36019 1.48966 1.75591 2.25840 2.35750 2.93497 3.05486 3.61898 3.87284 3.89579 4.05032 4.06362 4.07488 4.17738 4.19624 4.24242 4.35361 4.38539 4.49099 4.60224 4.66270 4.69665 4.72858 4.72887 4.78387 4.81612 4.84018 4.90404 4.98067 5.01404 5.05394 5.16384 5.17862 5.20910 5.21339 5.23191 5.30025 5.44788 5.44968 5.60166 5.63055 5.66047 5.68126 5.68161 5.71040 5.78621 6.18065 6.29375 6.69587 6.74863 7.31840 7.39778 8.86687 Molecular weight = 317.21amu Principal moments of inertia in cm(-1) A = 0.035803 B = 0.001702 C = 0.001674 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 781.861751 B =16444.259339 C =16719.202218 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.173 3.827 3 C -0.164 4.164 4 C -0.101 4.101 5 C -0.077 4.077 6 C -0.087 4.087 7 C -0.130 4.130 8 C -0.129 4.129 9 C -0.137 4.137 10 C -0.129 4.129 11 C -0.130 4.130 12 N -0.717 5.717 13 C 0.514 3.486 14 O -0.573 6.573 15 C -0.134 4.134 16 C -0.095 4.095 17 C -0.095 4.095 18 C -0.016 4.016 19 C -0.532 4.532 20 H 0.036 0.964 21 C 0.005 3.995 22 N -0.950 5.950 23 Si 0.948 3.052 24 H -0.267 1.267 25 H -0.281 1.281 26 H -0.253 1.253 27 H 0.079 0.921 28 H 0.046 0.954 29 H 0.058 0.942 30 H 0.058 0.942 31 H 0.047 0.953 32 H 0.079 0.921 33 H 0.076 0.924 34 H 0.076 0.924 35 H 0.082 0.918 36 H 0.082 0.918 37 H 0.130 0.870 38 H 0.134 0.866 39 H 0.134 0.866 40 H 0.134 0.866 41 H 0.130 0.870 42 H 0.413 0.587 43 H 0.112 0.888 44 H 0.112 0.888 45 H 0.050 0.950 46 H 0.051 0.949 47 H 0.056 0.944 48 H 0.055 0.945 49 H 0.013 0.987 50 H 0.012 0.988 51 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.490 -0.694 39.423 39.432 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.088 3.912 3 C -0.222 4.222 4 C -0.139 4.139 5 C -0.115 4.115 6 C -0.087 4.087 7 C -0.148 4.148 8 C -0.147 4.147 9 C -0.155 4.155 10 C -0.147 4.147 11 C -0.148 4.148 12 N -0.370 5.370 13 C 0.302 3.698 14 O -0.452 6.452 15 C -0.174 4.174 16 C -0.133 4.133 17 C -0.132 4.132 18 C -0.054 4.054 19 C -0.570 4.570 20 H 0.055 0.945 21 C -0.192 4.192 22 N -0.591 5.591 23 Si 0.771 3.229 24 H -0.192 1.192 25 H -0.207 1.207 26 H -0.176 1.176 27 H 0.098 0.902 28 H 0.066 0.934 29 H 0.077 0.923 30 H 0.077 0.923 31 H 0.066 0.934 32 H 0.098 0.902 33 H 0.094 0.906 34 H 0.094 0.906 35 H 0.100 0.900 36 H 0.100 0.900 37 H 0.148 0.852 38 H 0.152 0.848 39 H 0.152 0.848 40 H 0.152 0.848 41 H 0.148 0.852 42 H 0.250 0.750 43 H 0.130 0.870 44 H 0.130 0.870 45 H 0.069 0.931 46 H 0.070 0.930 47 H 0.074 0.926 48 H 0.074 0.926 49 H 0.032 0.968 50 H 0.031 0.969 51 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -0.006 0.003 39.175 39.175 hybrid contribution -0.057 0.110 -0.795 0.805 sum -0.063 0.113 38.379 38.379 Atomic orbital electron populations 1.22247 0.94950 1.02198 1.02767 1.20346 0.93928 0.92449 0.84501 1.22247 1.01099 0.96045 1.02768 1.21682 1.01505 0.99488 0.91237 1.20687 1.01575 0.99076 0.90153 1.20016 0.95020 0.96749 0.96952 1.21307 0.96172 1.00663 0.96611 1.21433 1.00495 0.96473 0.96335 1.21443 0.95354 0.97957 1.00758 1.21434 0.96752 1.00201 0.96347 1.21305 1.00473 0.96329 0.96647 1.46122 1.53806 1.32343 1.04706 1.20994 0.79267 0.84007 0.85549 1.90637 1.39293 1.27962 1.87351 1.21690 1.03677 1.01154 0.90842 1.21250 1.00273 0.98917 0.92878 1.21349 1.00058 0.98875 0.92939 1.19573 0.96077 0.95858 0.93883 1.21558 1.31377 1.12671 0.91410 0.94527 1.25986 0.97286 1.00433 0.95499 1.70058 1.47775 1.42694 0.98571 0.85694 0.79581 0.79501 0.78105 1.19213 1.20654 1.17642 0.90198 0.93444 0.92316 0.92312 0.93439 0.90202 0.90560 0.90568 0.89990 0.89984 0.85190 0.84777 0.84764 0.84777 0.85194 0.75030 0.87011 0.87029 0.93084 0.93000 0.92565 0.92582 0.96818 0.96920 0.92510 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.90 8.05 71.98 0.58 -2.32 16 2 C 0.17 2.67 0.83 3.60 0.00 2.68 16 3 C -0.16 -2.90 8.05 71.98 0.58 -2.32 16 4 C -0.10 -1.04 4.37 30.59 0.13 -0.90 16 5 C -0.08 -0.75 4.64 29.85 0.14 -0.62 16 6 C -0.09 -1.02 5.13 -19.86 -0.10 -1.12 16 7 C -0.13 -1.50 9.70 22.27 0.22 -1.29 16 8 C -0.13 -1.43 10.05 22.27 0.22 -1.21 16 9 C -0.14 -1.49 10.05 22.27 0.22 -1.26 16 10 C -0.13 -1.43 10.05 22.27 0.22 -1.21 16 11 C -0.13 -1.50 9.70 22.27 0.22 -1.29 16 12 N -0.72 -11.97 5.11 -422.92 -2.16 -14.13 16 13 C 0.51 12.53 7.25 87.66 0.64 13.17 16 14 O -0.57 -18.73 12.19 -3.04 -0.04 -18.77 16 15 C -0.13 -3.09 5.70 29.85 0.17 -2.92 16 16 C -0.10 -3.10 4.50 30.59 0.14 -2.97 16 17 C -0.09 -3.68 5.15 30.60 0.16 -3.53 16 18 C -0.02 -0.81 4.04 29.85 0.12 -0.69 16 19 C -0.53 -31.69 9.66 25.60 0.25 -31.44 16 20 H 0.04 2.35 7.99 -2.91 -0.02 2.33 16 21 C 0.00 0.28 5.47 84.65 0.46 0.74 16 22 N -0.95 -60.83 13.96 21.45 0.30 -60.53 16 23 Si 0.95 46.27 27.47 68.60 1.88 48.16 16 24 H -0.27 -12.54 7.11 99.48 0.71 -11.83 16 25 H -0.28 -13.29 7.11 99.48 0.71 -12.58 16 26 H -0.25 -11.76 6.54 99.48 0.65 -11.10 16 27 H 0.08 1.11 6.43 -2.38 -0.02 1.10 16 28 H 0.05 1.19 6.17 -2.39 -0.01 1.18 16 29 H 0.06 0.96 8.14 -2.38 -0.02 0.94 16 30 H 0.06 0.96 8.14 -2.39 -0.02 0.94 16 31 H 0.05 1.19 6.17 -2.39 -0.01 1.18 16 32 H 0.08 1.11 6.43 -2.38 -0.02 1.09 16 33 H 0.08 0.73 8.14 -2.39 -0.02 0.71 16 34 H 0.08 0.73 8.14 -2.38 -0.02 0.71 16 35 H 0.08 0.76 6.37 -2.38 -0.02 0.74 16 36 H 0.08 0.76 6.37 -2.39 -0.02 0.74 16 37 H 0.13 1.17 8.06 -2.91 -0.02 1.15 16 38 H 0.13 1.00 8.06 -2.91 -0.02 0.98 16 39 H 0.13 0.94 8.06 -2.91 -0.02 0.92 16 40 H 0.13 1.00 8.06 -2.91 -0.02 0.98 16 41 H 0.13 1.17 8.06 -2.91 -0.02 1.15 16 42 H 0.41 4.43 8.47 -92.71 -0.79 3.65 16 43 H 0.11 2.13 8.14 -2.39 -0.02 2.11 16 44 H 0.11 2.13 8.14 -2.38 -0.02 2.11 16 45 H 0.05 1.78 8.10 -2.39 -0.02 1.76 16 46 H 0.05 1.80 8.10 -2.39 -0.02 1.78 16 47 H 0.06 2.13 8.14 -2.39 -0.02 2.11 16 48 H 0.06 2.13 8.14 -2.39 -0.02 2.11 16 49 H 0.01 0.67 7.20 -2.39 -0.02 0.65 16 50 H 0.01 0.61 7.57 -2.39 -0.02 0.59 16 51 H 0.27 15.86 8.31 -92.71 -0.77 15.09 16 Total: -1.00 -74.85 400.97 4.40 -70.45 By element: Atomic # 1 Polarization: 13.24 SS G_CDS: 0.05 Total: 13.29 kcal Atomic # 6 Polarization: -42.84 SS G_CDS: 4.37 Total: -38.48 kcal Atomic # 7 Polarization: -72.79 SS G_CDS: -1.86 Total: -74.65 kcal Atomic # 8 Polarization: -18.73 SS G_CDS: -0.04 Total: -18.77 kcal Atomic # 14 Polarization: 46.27 SS G_CDS: 1.88 Total: 48.16 kcal Total: -74.85 4.40 -70.45 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000588911947.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.547 kcal (2) G-P(sol) polarization free energy of solvation -74.855 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.308 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.402 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.452 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.905 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds