Wall clock time and date at job start Tue Mar 31 2020 11:18:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50690 * 1 3 3 C 1.38263 * 119.99968 * 2 1 4 4 C 1.38216 * 119.99947 * 179.97438 * 3 2 1 5 5 C 1.38263 * 119.99958 * 0.08968 * 4 3 2 6 6 C 1.38211 * 119.99914 * 359.86762 * 5 4 3 7 7 C 1.38216 * 120.00299 * 179.97438 * 2 1 3 8 8 C 1.50701 * 119.99777 * 359.97438 * 7 2 1 9 9 C 1.52994 * 109.47164 * 269.16049 * 8 7 2 10 10 C 1.52995 * 109.47348 * 300.67517 * 9 8 7 11 11 C 1.53007 * 109.47057 * 60.67622 * 9 8 7 12 12 N 1.46501 * 109.47193 * 180.67343 * 9 8 7 13 13 C 1.34774 * 120.00168 * 180.02562 * 12 9 8 14 14 O 1.21284 * 120.00168 * 359.97438 * 13 12 9 15 15 C 1.50706 * 120.00125 * 180.02562 * 13 12 9 16 16 C 1.53003 * 109.47128 * 179.97438 * 15 13 12 17 17 C 1.52991 * 109.47048 * 179.97438 * 16 15 13 18 18 C 1.53006 * 109.47250 * 179.97438 * 17 16 15 19 19 C 1.50700 * 109.47312 * 179.97438 * 18 17 16 20 20 H 1.08007 * 119.99941 * 0.02562 * 19 18 17 21 21 C 1.37877 * 120.00043 * 180.02562 * 19 18 17 22 22 N 1.31512 * 119.99921 * 0.02562 * 21 19 18 23 23 Si 1.86795 * 119.99853 * 180.02562 * 21 19 18 24 24 H 1.48498 * 109.47489 * 90.00285 * 23 21 19 25 25 H 1.48509 * 109.46972 * 210.00274 * 23 21 19 26 26 H 1.48500 * 109.47213 * 329.99657 * 23 21 19 27 27 H 1.09003 * 109.46942 * 271.20588 * 1 2 3 28 28 H 1.09006 * 109.47346 * 31.20153 * 1 2 3 29 29 H 1.08998 * 109.47353 * 151.20889 * 1 2 3 30 30 H 1.07998 * 120.00410 * 0.02562 * 3 2 1 31 31 H 1.07998 * 120.00072 * 180.02562 * 4 3 2 32 32 H 1.07995 * 119.99629 * 179.97438 * 5 4 3 33 33 H 1.07998 * 119.99938 * 180.36129 * 6 5 4 34 34 H 1.09007 * 109.47206 * 29.15998 * 8 7 2 35 35 H 1.08999 * 109.46898 * 149.15635 * 8 7 2 36 36 H 1.09008 * 109.46989 * 63.06579 * 10 9 8 37 37 H 1.09004 * 109.47293 * 183.06882 * 10 9 8 38 38 H 1.09000 * 109.46978 * 303.07187 * 10 9 8 39 39 H 1.08999 * 109.46779 * 62.94418 * 11 9 8 40 40 H 1.09006 * 109.46755 * 182.93992 * 11 9 8 41 41 H 1.08989 * 109.47287 * 302.94065 * 11 9 8 42 42 H 0.96994 * 120.00116 * 0.02562 * 12 9 8 43 43 H 1.08998 * 109.46695 * 299.99281 * 15 13 12 44 44 H 1.08999 * 109.47147 * 59.99720 * 15 13 12 45 45 H 1.09002 * 109.46705 * 300.00062 * 16 15 13 46 46 H 1.08999 * 109.47273 * 59.99351 * 16 15 13 47 47 H 1.09002 * 109.47573 * 299.99719 * 17 16 15 48 48 H 1.08999 * 109.47459 * 59.99654 * 17 16 15 49 49 H 1.08993 * 109.46973 * 300.00218 * 18 17 16 50 50 H 1.09007 * 109.46566 * 60.00155 * 18 17 16 51 51 H 0.96998 * 120.00140 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1982 1.1974 0.0000 4 6 3.5804 1.1974 0.0005 5 6 4.2717 0.0000 -0.0008 6 6 3.5806 -1.1969 0.0001 7 6 2.1980 -1.1969 0.0005 8 6 1.4446 -2.5021 0.0017 9 6 1.2084 -2.9533 1.4444 10 6 2.5541 -3.1248 2.1519 11 6 0.3767 -1.8997 2.1787 12 7 0.4900 -4.2301 1.4453 13 6 0.1704 -4.8227 2.6128 14 8 0.4779 -4.2992 3.6628 15 6 -0.5681 -6.1364 2.6138 16 6 -0.8043 -6.5876 4.0565 17 6 -1.5546 -7.9209 4.0575 18 6 -1.7903 -8.3725 5.5003 19 6 -2.5299 -9.6856 5.5012 20 1 -2.8040 -10.1517 4.5662 21 6 -2.8566 -10.2919 6.6956 22 7 -2.5232 -9.7242 7.8341 23 14 -3.7727 -11.9198 6.6967 24 1 -2.7954 -13.0378 6.6823 25 1 -4.6140 -12.0135 7.9169 26 1 -4.6371 -12.0022 5.4921 27 1 -0.3633 0.0216 1.0275 28 1 -0.3634 0.8790 -0.5324 29 1 -0.3634 -0.9006 -0.4949 30 1 1.6583 2.1327 0.0004 31 1 4.1204 2.1327 0.0010 32 1 5.3516 0.0001 -0.0008 33 1 4.1206 -2.1322 0.0049 34 1 0.4854 -2.3684 -0.4988 35 1 2.0268 -3.2582 -0.5249 36 1 3.0648 -2.1629 2.1993 37 1 2.3883 -3.4985 3.1624 38 1 3.1679 -3.8350 1.5979 39 1 -0.6018 -1.8151 1.7060 40 1 0.2527 -2.1960 3.2203 41 1 0.8867 -0.9376 2.1329 42 1 0.2444 -4.6490 0.6057 43 1 -1.5266 -6.0147 2.1093 44 1 0.0249 -6.8869 2.0912 45 1 0.1544 -6.7093 4.5607 46 1 -1.3971 -5.8371 4.5795 47 1 -2.5133 -7.7988 3.5535 48 1 -0.9622 -8.6716 3.5344 49 1 -0.8315 -8.4948 6.0039 50 1 -2.3826 -7.6219 6.0237 51 1 -2.7527 -10.1509 8.6744 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000588918311.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:18:59 Heat of formation + Delta-G solvation = -47.402363 kcal Electronic energy + Delta-G solvation = -26130.860683 eV Core-core repulsion = 22607.718536 eV Total energy + Delta-G solvation = -3523.142146 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 317.210 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -40.74895 -39.54752 -36.77987 -34.80701 -33.50775 -32.76341 -32.46804 -30.90162 -29.31567 -28.09675 -27.35946 -26.38500 -25.59678 -22.96023 -22.30090 -21.51231 -20.13431 -19.90374 -19.49264 -17.08001 -16.71141 -16.21097 -16.03828 -15.90090 -15.60275 -15.13744 -14.72019 -14.43329 -14.27808 -13.77921 -13.73070 -13.51176 -13.34175 -13.16664 -12.69165 -12.60324 -12.54510 -12.29394 -12.13491 -12.02534 -11.66558 -11.61829 -11.56357 -11.32790 -11.25500 -11.23617 -10.98187 -10.93207 -10.50131 -10.47468 -10.37755 -9.58444 -9.55003 -9.17380 -9.10100 -9.07831 -8.95755 -8.85228 -8.28662 -5.93416 -3.95841 1.01177 1.06542 2.79961 3.10289 3.35144 3.41088 3.44224 3.44812 4.41458 4.43819 4.50447 4.54182 4.61349 4.64813 4.77599 4.93437 4.97563 5.00674 5.12121 5.23036 5.32511 5.36312 5.40518 5.41763 5.43482 5.45649 5.50811 5.64039 5.64824 5.71436 5.76093 5.82496 5.88495 5.93134 6.15149 6.17557 6.19697 6.23094 6.26443 6.34472 6.35902 6.52458 6.59568 6.69601 6.87631 7.05698 7.23023 7.54757 7.76299 7.92691 8.08260 8.36521 8.50117 9.11913 9.67643 11.17890 Molecular weight = 317.21amu Principal moments of inertia in cm(-1) A = 0.039199 B = 0.001833 C = 0.001821 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 714.135998 B =15270.307150 C =15375.986843 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.077 4.077 3 C -0.121 4.121 4 C -0.120 4.120 5 C -0.126 4.126 6 C -0.108 4.108 7 C -0.073 4.073 8 C -0.088 4.088 9 C 0.182 3.818 10 C -0.165 4.165 11 C -0.168 4.168 12 N -0.733 5.733 13 C 0.515 3.485 14 O -0.530 6.530 15 C -0.140 4.140 16 C -0.102 4.102 17 C -0.110 4.110 18 C 0.020 3.980 19 C -0.520 4.520 20 H 0.054 0.946 21 C 0.055 3.945 22 N -0.895 5.895 23 Si 0.891 3.109 24 H -0.281 1.281 25 H -0.287 1.287 26 H -0.274 1.274 27 H 0.080 0.920 28 H 0.063 0.937 29 H 0.070 0.930 30 H 0.120 0.880 31 H 0.119 0.881 32 H 0.120 0.880 33 H 0.122 0.878 34 H 0.082 0.918 35 H 0.077 0.923 36 H 0.064 0.936 37 H 0.080 0.920 38 H 0.051 0.949 39 H 0.056 0.944 40 H 0.078 0.922 41 H 0.066 0.934 42 H 0.397 0.603 43 H 0.089 0.911 44 H 0.089 0.911 45 H 0.063 0.937 46 H 0.063 0.937 47 H 0.046 0.954 48 H 0.046 0.954 49 H 0.015 0.985 50 H 0.016 0.984 51 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.367 22.443 -21.642 33.186 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.077 4.077 3 C -0.139 4.139 4 C -0.138 4.138 5 C -0.144 4.144 6 C -0.126 4.126 7 C -0.074 4.074 8 C -0.125 4.125 9 C 0.097 3.903 10 C -0.223 4.223 11 C -0.226 4.226 12 N -0.387 5.387 13 C 0.303 3.697 14 O -0.405 6.405 15 C -0.180 4.180 16 C -0.140 4.140 17 C -0.148 4.148 18 C -0.017 4.017 19 C -0.558 4.558 20 H 0.072 0.928 21 C -0.146 4.146 22 N -0.535 5.535 23 Si 0.719 3.281 24 H -0.207 1.207 25 H -0.213 1.213 26 H -0.199 1.199 27 H 0.099 0.901 28 H 0.082 0.918 29 H 0.089 0.911 30 H 0.138 0.862 31 H 0.138 0.862 32 H 0.138 0.862 33 H 0.140 0.860 34 H 0.100 0.900 35 H 0.096 0.904 36 H 0.083 0.917 37 H 0.099 0.901 38 H 0.070 0.930 39 H 0.075 0.925 40 H 0.097 0.903 41 H 0.085 0.915 42 H 0.231 0.769 43 H 0.107 0.893 44 H 0.107 0.893 45 H 0.081 0.919 46 H 0.081 0.919 47 H 0.065 0.935 48 H 0.065 0.935 49 H 0.034 0.966 50 H 0.034 0.966 51 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 11.569 22.799 -20.671 32.877 hybrid contribution -0.492 -1.075 -0.406 1.250 sum 11.077 21.724 -21.077 32.231 Atomic orbital electron populations 1.21161 0.91305 1.02697 1.03129 1.19757 0.96042 0.92537 0.99381 1.21022 0.94286 0.97437 1.01179 1.21129 0.94322 0.98058 1.00276 1.21118 0.99860 0.92517 1.00928 1.21064 0.93537 0.98232 0.99786 1.19450 0.93486 0.93876 1.00577 1.20912 1.00818 0.94681 0.96112 1.20143 0.92427 0.83667 0.94077 1.22295 0.95359 1.01955 1.02721 1.22491 0.99202 0.98167 1.02733 1.46250 1.60111 1.23365 1.08932 1.21006 0.78679 0.86833 0.83212 1.90645 1.53214 1.65216 1.31464 1.21806 1.00627 0.93667 1.01877 1.21431 1.01542 0.98506 0.92525 1.21649 0.98078 0.93908 1.01175 1.19097 0.96853 0.95808 0.89981 1.21290 1.36313 1.06059 0.92172 0.92771 1.25045 0.96169 0.97660 0.95739 1.69974 1.47255 1.39000 0.97221 0.86611 0.79829 0.84217 0.77421 1.20725 1.21264 1.19941 0.90147 0.91845 0.91104 0.86173 0.86247 0.86181 0.86032 0.89957 0.90437 0.91740 0.90119 0.92975 0.92543 0.90344 0.91515 0.76911 0.89308 0.89315 0.91859 0.91857 0.93530 0.93543 0.96612 0.96601 0.93064 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -0.81 8.15 36.00 0.29 -0.52 16 2 C -0.08 -0.60 4.74 -104.63 -0.50 -1.09 16 3 C -0.12 -0.90 9.71 -39.58 -0.38 -1.28 16 4 C -0.12 -0.86 10.05 -39.58 -0.40 -1.26 16 5 C -0.13 -0.92 10.05 -39.58 -0.40 -1.32 16 6 C -0.11 -0.84 7.90 -39.59 -0.31 -1.15 16 7 C -0.07 -0.58 4.02 -104.62 -0.42 -1.00 16 8 C -0.09 -0.63 4.32 -27.89 -0.12 -0.75 16 9 C 0.18 1.72 0.83 -131.82 -0.11 1.61 16 10 C -0.17 -1.77 7.66 37.16 0.28 -1.49 16 11 C -0.17 -1.76 6.51 37.16 0.24 -1.52 16 12 N -0.73 -7.12 5.11 -47.61 -0.24 -7.36 16 13 C 0.52 6.92 7.24 -10.98 -0.08 6.84 16 14 O -0.53 -9.13 12.20 5.55 0.07 -9.06 16 15 C -0.14 -1.84 5.70 -27.88 -0.16 -2.00 16 16 C -0.10 -1.83 4.50 -26.73 -0.12 -1.95 16 17 C -0.11 -2.30 5.15 -26.73 -0.14 -2.43 16 18 C 0.02 0.53 4.97 -27.88 -0.14 0.39 16 19 C -0.52 -15.11 9.11 -34.44 -0.31 -15.42 16 20 H 0.05 1.51 7.74 -52.48 -0.41 1.11 16 21 C 0.05 1.61 5.46 -17.82 -0.10 1.52 16 22 N -0.90 -27.69 13.29 55.43 0.74 -26.95 16 23 Si 0.89 22.04 29.54 -169.99 -5.02 17.01 16 24 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 25 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 26 H -0.27 -6.61 7.11 56.52 0.40 -6.21 16 27 H 0.08 0.54 5.78 -51.93 -0.30 0.24 16 28 H 0.06 0.34 8.09 -51.93 -0.42 -0.08 16 29 H 0.07 0.42 5.89 -51.93 -0.31 0.11 16 30 H 0.12 0.70 8.06 -52.49 -0.42 0.27 16 31 H 0.12 0.63 8.06 -52.49 -0.42 0.21 16 32 H 0.12 0.67 8.06 -52.49 -0.42 0.25 16 33 H 0.12 0.81 7.97 -52.49 -0.42 0.40 16 34 H 0.08 0.51 5.90 -51.92 -0.31 0.20 16 35 H 0.08 0.49 8.09 -51.93 -0.42 0.07 16 36 H 0.06 0.66 6.35 -51.92 -0.33 0.33 16 37 H 0.08 1.12 6.09 -51.93 -0.32 0.80 16 38 H 0.05 0.51 8.14 -51.93 -0.42 0.08 16 39 H 0.06 0.53 7.00 -51.93 -0.36 0.17 16 40 H 0.08 1.07 6.25 -51.93 -0.32 0.74 16 41 H 0.07 0.66 5.33 -51.94 -0.28 0.38 16 42 H 0.40 2.71 8.47 -40.82 -0.35 2.36 16 43 H 0.09 1.01 8.14 -51.93 -0.42 0.59 16 44 H 0.09 1.02 8.14 -51.93 -0.42 0.59 16 45 H 0.06 1.21 8.10 -51.93 -0.42 0.79 16 46 H 0.06 1.21 8.10 -51.93 -0.42 0.79 16 47 H 0.05 0.93 8.14 -51.93 -0.42 0.51 16 48 H 0.05 0.93 8.14 -51.93 -0.42 0.50 16 49 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 50 H 0.02 0.45 8.14 -51.92 -0.42 0.02 16 51 H 0.26 7.56 8.31 -40.82 -0.34 7.22 16 LS Contribution 392.17 15.07 5.91 5.91 Total: -1.00 -33.68 392.17 -10.15 -43.83 By element: Atomic # 1 Polarization: 8.17 SS G_CDS: -8.74 Total: -0.56 kcal Atomic # 6 Polarization: -19.96 SS G_CDS: -2.87 Total: -22.82 kcal Atomic # 7 Polarization: -34.80 SS G_CDS: 0.49 Total: -34.31 kcal Atomic # 8 Polarization: -9.13 SS G_CDS: 0.07 Total: -9.06 kcal Atomic # 14 Polarization: 22.04 SS G_CDS: -5.02 Total: 17.01 kcal Total LS contribution 5.91 Total: 5.91 kcal Total: -33.68 -10.15 -43.83 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000588918311.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.568 kcal (2) G-P(sol) polarization free energy of solvation -33.682 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.249 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.153 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.835 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.402 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds