Wall clock time and date at job start Tue Mar 31 2020 11:18:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50690 * 1 3 3 C 1.38263 * 119.99968 * 2 1 4 4 C 1.38216 * 119.99947 * 179.97438 * 3 2 1 5 5 C 1.38263 * 119.99958 * 0.08968 * 4 3 2 6 6 C 1.38211 * 119.99914 * 359.86762 * 5 4 3 7 7 C 1.38216 * 120.00299 * 179.97438 * 2 1 3 8 8 C 1.50701 * 119.99777 * 359.97438 * 7 2 1 9 9 C 1.52994 * 109.47164 * 269.16049 * 8 7 2 10 10 C 1.52995 * 109.47348 * 300.67517 * 9 8 7 11 11 C 1.53007 * 109.47057 * 60.67622 * 9 8 7 12 12 N 1.46501 * 109.47193 * 180.67343 * 9 8 7 13 13 C 1.34774 * 120.00168 * 180.02562 * 12 9 8 14 14 O 1.21284 * 120.00168 * 359.97438 * 13 12 9 15 15 C 1.50706 * 120.00125 * 180.02562 * 13 12 9 16 16 C 1.53003 * 109.47128 * 179.97438 * 15 13 12 17 17 C 1.52991 * 109.47048 * 179.97438 * 16 15 13 18 18 C 1.53006 * 109.47250 * 179.97438 * 17 16 15 19 19 C 1.50700 * 109.47312 * 179.97438 * 18 17 16 20 20 H 1.08007 * 119.99941 * 0.02562 * 19 18 17 21 21 C 1.37877 * 120.00043 * 180.02562 * 19 18 17 22 22 N 1.31512 * 119.99921 * 0.02562 * 21 19 18 23 23 Si 1.86795 * 119.99853 * 180.02562 * 21 19 18 24 24 H 1.48498 * 109.47489 * 90.00285 * 23 21 19 25 25 H 1.48509 * 109.46972 * 210.00274 * 23 21 19 26 26 H 1.48500 * 109.47213 * 329.99657 * 23 21 19 27 27 H 1.09003 * 109.46942 * 271.20588 * 1 2 3 28 28 H 1.09006 * 109.47346 * 31.20153 * 1 2 3 29 29 H 1.08998 * 109.47353 * 151.20889 * 1 2 3 30 30 H 1.07998 * 120.00410 * 0.02562 * 3 2 1 31 31 H 1.07998 * 120.00072 * 180.02562 * 4 3 2 32 32 H 1.07995 * 119.99629 * 179.97438 * 5 4 3 33 33 H 1.07998 * 119.99938 * 180.36129 * 6 5 4 34 34 H 1.09007 * 109.47206 * 29.15998 * 8 7 2 35 35 H 1.08999 * 109.46898 * 149.15635 * 8 7 2 36 36 H 1.09008 * 109.46989 * 63.06579 * 10 9 8 37 37 H 1.09004 * 109.47293 * 183.06882 * 10 9 8 38 38 H 1.09000 * 109.46978 * 303.07187 * 10 9 8 39 39 H 1.08999 * 109.46779 * 62.94418 * 11 9 8 40 40 H 1.09006 * 109.46755 * 182.93992 * 11 9 8 41 41 H 1.08989 * 109.47287 * 302.94065 * 11 9 8 42 42 H 0.96994 * 120.00116 * 0.02562 * 12 9 8 43 43 H 1.08998 * 109.46695 * 299.99281 * 15 13 12 44 44 H 1.08999 * 109.47147 * 59.99720 * 15 13 12 45 45 H 1.09002 * 109.46705 * 300.00062 * 16 15 13 46 46 H 1.08999 * 109.47273 * 59.99351 * 16 15 13 47 47 H 1.09002 * 109.47573 * 299.99719 * 17 16 15 48 48 H 1.08999 * 109.47459 * 59.99654 * 17 16 15 49 49 H 1.08993 * 109.46973 * 300.00218 * 18 17 16 50 50 H 1.09007 * 109.46566 * 60.00155 * 18 17 16 51 51 H 0.96998 * 120.00140 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1982 1.1974 0.0000 4 6 3.5804 1.1974 0.0005 5 6 4.2717 0.0000 -0.0008 6 6 3.5806 -1.1969 0.0001 7 6 2.1980 -1.1969 0.0005 8 6 1.4446 -2.5021 0.0017 9 6 1.2084 -2.9533 1.4444 10 6 2.5541 -3.1248 2.1519 11 6 0.3767 -1.8997 2.1787 12 7 0.4900 -4.2301 1.4453 13 6 0.1704 -4.8227 2.6128 14 8 0.4779 -4.2992 3.6628 15 6 -0.5681 -6.1364 2.6138 16 6 -0.8043 -6.5876 4.0565 17 6 -1.5546 -7.9209 4.0575 18 6 -1.7903 -8.3725 5.5003 19 6 -2.5299 -9.6856 5.5012 20 1 -2.8040 -10.1517 4.5662 21 6 -2.8566 -10.2919 6.6956 22 7 -2.5232 -9.7242 7.8341 23 14 -3.7727 -11.9198 6.6967 24 1 -2.7954 -13.0378 6.6823 25 1 -4.6140 -12.0135 7.9169 26 1 -4.6371 -12.0022 5.4921 27 1 -0.3633 0.0216 1.0275 28 1 -0.3634 0.8790 -0.5324 29 1 -0.3634 -0.9006 -0.4949 30 1 1.6583 2.1327 0.0004 31 1 4.1204 2.1327 0.0010 32 1 5.3516 0.0001 -0.0008 33 1 4.1206 -2.1322 0.0049 34 1 0.4854 -2.3684 -0.4988 35 1 2.0268 -3.2582 -0.5249 36 1 3.0648 -2.1629 2.1993 37 1 2.3883 -3.4985 3.1624 38 1 3.1679 -3.8350 1.5979 39 1 -0.6018 -1.8151 1.7060 40 1 0.2527 -2.1960 3.2203 41 1 0.8867 -0.9376 2.1329 42 1 0.2444 -4.6490 0.6057 43 1 -1.5266 -6.0147 2.1093 44 1 0.0249 -6.8869 2.0912 45 1 0.1544 -6.7093 4.5607 46 1 -1.3971 -5.8371 4.5795 47 1 -2.5133 -7.7988 3.5535 48 1 -0.9622 -8.6716 3.5344 49 1 -0.8315 -8.4948 6.0039 50 1 -2.3826 -7.6219 6.0237 51 1 -2.7527 -10.1509 8.6744 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000588918311.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:18:59 Heat of formation + Delta-G solvation = -66.019482 kcal Electronic energy + Delta-G solvation = -26131.667982 eV Core-core repulsion = 22607.718536 eV Total energy + Delta-G solvation = -3523.949445 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 317.210 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -41.52169 -40.34879 -37.67566 -36.50503 -34.60410 -34.16779 -33.30439 -31.92388 -30.81097 -28.72092 -28.11824 -27.41691 -26.95360 -24.45680 -23.06026 -22.38883 -21.67513 -20.95164 -20.32322 -18.40909 -18.05463 -17.28752 -16.83302 -16.77922 -16.55003 -16.50165 -15.70216 -15.60162 -15.38015 -14.84362 -14.73882 -14.53237 -14.10277 -13.99782 -13.81190 -13.72023 -13.56045 -13.28235 -13.18924 -13.14045 -12.94132 -12.82584 -12.76843 -12.35261 -12.32945 -12.16092 -12.14251 -12.03652 -11.99680 -11.76804 -11.56650 -11.36044 -11.32319 -11.09384 -10.54762 -10.46531 -10.02129 -9.62655 -9.41506 -8.18325 -6.30592 0.46554 0.52650 1.40396 1.42829 1.53882 1.76025 2.23371 2.42367 2.88643 3.14208 3.73563 3.85127 3.88613 4.01556 4.05130 4.10342 4.15578 4.18398 4.19502 4.27398 4.44013 4.54741 4.64883 4.69013 4.71423 4.76303 4.79707 4.84232 4.87910 4.89560 4.90855 4.91704 4.96006 5.00388 5.03476 5.21800 5.22381 5.33469 5.34779 5.35845 5.39885 5.41908 5.57526 5.63246 5.67201 5.68616 5.79044 5.80660 5.88686 6.17973 6.25827 6.70786 6.87932 7.38949 7.41333 8.93874 Molecular weight = 317.21amu Principal moments of inertia in cm(-1) A = 0.039199 B = 0.001833 C = 0.001821 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 714.135998 B =15270.307150 C =15375.986843 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.088 4.088 3 C -0.134 4.134 4 C -0.128 4.128 5 C -0.137 4.137 6 C -0.118 4.118 7 C -0.085 4.085 8 C -0.078 4.078 9 C 0.183 3.817 10 C -0.160 4.160 11 C -0.161 4.161 12 N -0.714 5.714 13 C 0.513 3.487 14 O -0.576 6.576 15 C -0.130 4.130 16 C -0.094 4.094 17 C -0.096 4.096 18 C 0.018 3.982 19 C -0.542 4.542 20 H 0.066 0.934 21 C -0.008 4.008 22 N -0.938 5.938 23 Si 0.970 3.030 24 H -0.272 1.272 25 H -0.284 1.284 26 H -0.259 1.259 27 H 0.074 0.926 28 H 0.072 0.928 29 H 0.078 0.922 30 H 0.132 0.868 31 H 0.135 0.865 32 H 0.134 0.866 33 H 0.129 0.871 34 H 0.097 0.903 35 H 0.092 0.908 36 H 0.066 0.934 37 H 0.044 0.956 38 H 0.063 0.937 39 H 0.067 0.933 40 H 0.041 0.959 41 H 0.070 0.930 42 H 0.416 0.584 43 H 0.116 0.884 44 H 0.116 0.884 45 H 0.041 0.959 46 H 0.041 0.959 47 H 0.060 0.940 48 H 0.060 0.940 49 H -0.016 1.016 50 H -0.016 1.016 51 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.903 21.865 -24.806 34.818 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.088 4.088 3 C -0.152 4.152 4 C -0.146 4.146 5 C -0.155 4.155 6 C -0.136 4.136 7 C -0.086 4.086 8 C -0.115 4.115 9 C 0.098 3.902 10 C -0.218 4.218 11 C -0.219 4.219 12 N -0.367 5.367 13 C 0.301 3.699 14 O -0.455 6.455 15 C -0.169 4.169 16 C -0.132 4.132 17 C -0.133 4.133 18 C -0.019 4.019 19 C -0.580 4.580 20 H 0.084 0.916 21 C -0.205 4.205 22 N -0.578 5.578 23 Si 0.794 3.206 24 H -0.197 1.197 25 H -0.209 1.209 26 H -0.183 1.183 27 H 0.093 0.907 28 H 0.091 0.909 29 H 0.096 0.904 30 H 0.150 0.850 31 H 0.153 0.847 32 H 0.152 0.848 33 H 0.147 0.853 34 H 0.115 0.885 35 H 0.111 0.889 36 H 0.085 0.915 37 H 0.063 0.937 38 H 0.082 0.918 39 H 0.086 0.914 40 H 0.060 0.940 41 H 0.089 0.911 42 H 0.253 0.747 43 H 0.134 0.866 44 H 0.134 0.866 45 H 0.060 0.940 46 H 0.060 0.940 47 H 0.079 0.921 48 H 0.078 0.922 49 H 0.002 0.998 50 H 0.002 0.998 51 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 11.107 22.223 -23.900 34.474 hybrid contribution -0.291 -0.805 0.615 1.054 sum 10.816 21.418 -23.285 33.435 Atomic orbital electron populations 1.21167 0.90532 1.03571 1.02961 1.19981 0.96778 0.92695 0.99311 1.21286 0.94674 0.98035 1.01164 1.21407 0.94534 0.98810 0.99835 1.21379 1.00773 0.92567 1.00805 1.21262 0.93765 0.98794 0.99824 1.19573 0.93697 0.94206 1.01077 1.20841 1.01856 0.94719 0.94116 1.20165 0.91354 0.83098 0.95593 1.22223 0.96464 1.02178 1.00968 1.22417 1.00149 0.98656 1.00699 1.46036 1.58845 1.23125 1.08689 1.21059 0.78457 0.86896 0.83489 1.90658 1.55127 1.66352 1.33355 1.21678 1.02609 0.94131 0.98492 1.21217 0.99527 0.96588 0.95891 1.21450 0.99435 0.95460 0.96991 1.19062 0.94445 0.94865 0.93509 1.21763 1.36484 1.06863 0.92860 0.91558 1.26107 0.97094 1.02068 0.95229 1.70134 1.48543 1.41078 0.98058 0.85372 0.78499 0.78766 0.77939 1.19710 1.20942 1.18296 0.90743 0.90887 0.90381 0.84964 0.84709 0.84836 0.85273 0.88459 0.88944 0.91479 0.93659 0.91845 0.91400 0.93972 0.91109 0.74675 0.86557 0.86635 0.94032 0.93983 0.92120 0.92152 0.99793 0.99761 0.92874 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.40 8.15 71.23 0.58 -0.81 16 2 C -0.09 -1.23 4.74 -19.87 -0.09 -1.32 16 3 C -0.13 -1.81 9.71 22.27 0.22 -1.60 16 4 C -0.13 -1.67 10.05 22.27 0.22 -1.45 16 5 C -0.14 -1.84 10.05 22.27 0.22 -1.61 16 6 C -0.12 -1.66 7.90 22.27 0.18 -1.48 16 7 C -0.08 -1.19 4.02 -19.87 -0.08 -1.27 16 8 C -0.08 -0.91 4.32 29.85 0.13 -0.78 16 9 C 0.18 3.22 0.83 3.60 0.00 3.22 16 10 C -0.16 -3.40 7.66 71.98 0.55 -2.84 16 11 C -0.16 -3.33 6.51 71.98 0.47 -2.86 16 12 N -0.71 -12.37 5.11 -422.92 -2.16 -14.53 16 13 C 0.51 13.37 7.24 87.66 0.64 14.00 16 14 O -0.58 -20.60 12.20 -3.04 -0.04 -20.63 16 15 C -0.13 -3.14 5.70 29.85 0.17 -2.97 16 16 C -0.09 -3.41 4.50 30.59 0.14 -3.28 16 17 C -0.10 -3.95 5.15 30.59 0.16 -3.79 16 18 C 0.02 1.02 4.97 29.85 0.15 1.17 16 19 C -0.54 -31.69 9.11 25.60 0.23 -31.46 16 20 H 0.07 3.63 7.74 -2.91 -0.02 3.61 16 21 C -0.01 -0.47 5.46 84.65 0.46 0.00 16 22 N -0.94 -59.47 13.29 21.45 0.28 -59.19 16 23 Si 0.97 45.07 29.54 68.60 2.03 47.10 16 24 H -0.27 -12.15 7.11 99.48 0.71 -11.44 16 25 H -0.28 -12.95 7.11 99.48 0.71 -12.24 16 26 H -0.26 -11.30 7.11 99.48 0.71 -10.60 16 27 H 0.07 0.91 5.78 -2.39 -0.01 0.90 16 28 H 0.07 0.65 8.09 -2.38 -0.02 0.63 16 29 H 0.08 0.73 5.89 -2.39 -0.01 0.71 16 30 H 0.13 1.36 8.06 -2.91 -0.02 1.33 16 31 H 0.14 1.23 8.06 -2.91 -0.02 1.21 16 32 H 0.13 1.31 8.06 -2.91 -0.02 1.29 16 33 H 0.13 1.52 7.97 -2.91 -0.02 1.49 16 34 H 0.10 0.87 5.90 -2.38 -0.01 0.86 16 35 H 0.09 0.84 8.09 -2.39 -0.02 0.82 16 36 H 0.07 1.36 6.35 -2.38 -0.02 1.34 16 37 H 0.04 1.30 6.09 -2.39 -0.01 1.29 16 38 H 0.06 1.16 8.14 -2.39 -0.02 1.14 16 39 H 0.07 1.21 7.00 -2.39 -0.02 1.19 16 40 H 0.04 1.20 6.25 -2.38 -0.01 1.18 16 41 H 0.07 1.38 5.33 -2.39 -0.01 1.37 16 42 H 0.42 4.17 8.47 -92.71 -0.79 3.38 16 43 H 0.12 2.24 8.14 -2.39 -0.02 2.22 16 44 H 0.12 2.24 8.14 -2.39 -0.02 2.22 16 45 H 0.04 1.66 8.10 -2.39 -0.02 1.64 16 46 H 0.04 1.68 8.10 -2.39 -0.02 1.66 16 47 H 0.06 2.33 8.14 -2.39 -0.02 2.31 16 48 H 0.06 2.32 8.14 -2.39 -0.02 2.30 16 49 H -0.02 -1.00 8.14 -2.39 -0.02 -1.02 16 50 H -0.02 -0.98 8.14 -2.38 -0.02 -1.00 16 51 H 0.26 15.59 8.31 -92.71 -0.77 14.82 16 Total: -1.00 -76.36 392.17 4.58 -71.78 By element: Atomic # 1 Polarization: 14.50 SS G_CDS: 0.12 Total: 14.62 kcal Atomic # 6 Polarization: -43.49 SS G_CDS: 4.34 Total: -39.15 kcal Atomic # 7 Polarization: -71.84 SS G_CDS: -1.87 Total: -73.72 kcal Atomic # 8 Polarization: -20.60 SS G_CDS: -0.04 Total: -20.63 kcal Atomic # 14 Polarization: 45.07 SS G_CDS: 2.03 Total: 47.10 kcal Total: -76.36 4.58 -71.78 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000588918311.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.763 kcal (2) G-P(sol) polarization free energy of solvation -76.360 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.597 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.578 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.783 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.019 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds