Wall clock time and date at job start Tue Mar 31 2020 11:59:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.50702 * 109.47428 * 2 1 4 4 C 1.38110 * 120.03125 * 351.50275 * 3 2 1 5 5 C 1.38286 * 120.07264 * 179.97438 * 4 3 2 6 6 C 1.50694 * 119.93052 * 179.97438 * 5 4 3 7 7 C 1.38281 * 120.13659 * 359.97438 * 5 4 3 8 8 C 1.38114 * 120.07219 * 359.97438 * 7 5 4 9 9 C 1.50697 * 120.03419 * 180.02562 * 8 7 5 10 10 C 1.53003 * 109.47244 * 265.73587 * 9 8 7 11 11 C 1.38864 * 120.04011 * 171.47704 * 3 2 1 12 12 N 1.39928 * 120.07088 * 0.02562 * 11 3 2 13 13 C 1.34775 * 119.99715 * 286.51439 * 12 11 3 14 14 O 1.21286 * 120.00088 * 5.00402 * 13 12 11 15 15 C 1.50705 * 119.99798 * 185.00865 * 13 12 11 16 16 C 1.52998 * 109.46874 * 179.97438 * 15 13 12 17 17 C 1.53004 * 109.46926 * 180.02562 * 16 15 13 18 18 C 1.53003 * 109.47170 * 180.02562 * 17 16 15 19 19 C 1.50695 * 109.47181 * 180.02562 * 18 17 16 20 20 H 1.08003 * 120.00196 * 359.97438 * 19 18 17 21 21 C 1.37876 * 119.99984 * 179.97438 * 19 18 17 22 22 N 1.31519 * 120.00357 * 359.97438 * 21 19 18 23 23 Si 1.86804 * 120.00197 * 180.02562 * 21 19 18 24 24 H 1.48492 * 109.47126 * 59.99773 * 23 21 19 25 25 H 1.48497 * 109.47298 * 180.02562 * 23 21 19 26 26 H 1.48508 * 109.46707 * 300.00193 * 23 21 19 27 27 H 1.08997 * 109.47278 * 300.78822 * 1 2 3 28 28 H 1.09006 * 109.46916 * 60.79243 * 1 2 3 29 29 H 1.08998 * 109.47033 * 180.78647 * 1 2 3 30 30 H 1.09000 * 109.47618 * 240.00173 * 2 1 3 31 31 H 1.09004 * 109.47176 * 119.99594 * 2 1 3 32 32 H 1.08005 * 119.96929 * 359.69646 * 4 3 2 33 33 H 1.09000 * 109.47183 * 90.00438 * 6 5 4 34 34 H 1.09001 * 109.47356 * 209.99916 * 6 5 4 35 35 H 1.08995 * 109.47340 * 330.00238 * 6 5 4 36 36 H 1.08006 * 119.96228 * 180.02562 * 7 5 4 37 37 H 1.09003 * 109.47351 * 25.73855 * 9 8 7 38 38 H 1.09006 * 109.46977 * 145.73775 * 9 8 7 39 39 H 1.09002 * 109.46700 * 55.12241 * 10 9 8 40 40 H 1.08998 * 109.46972 * 175.11394 * 10 9 8 41 41 H 1.08997 * 109.47248 * 295.11662 * 10 9 8 42 42 H 0.96993 * 120.00273 * 106.50753 * 12 11 3 43 43 H 1.08997 * 109.47281 * 299.99759 * 15 13 12 44 44 H 1.09000 * 109.47232 * 60.00111 * 15 13 12 45 45 H 1.09004 * 109.47747 * 300.00103 * 16 15 13 46 46 H 1.09001 * 109.47226 * 60.00132 * 16 15 13 47 47 H 1.09002 * 109.47059 * 299.99778 * 17 16 15 48 48 H 1.09000 * 109.47224 * 60.00555 * 17 16 15 49 49 H 1.09014 * 109.46767 * 299.99925 * 18 17 16 50 50 H 1.09001 * 109.47474 * 59.99809 * 18 17 16 51 51 H 0.96998 * 120.00552 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 1.1479 2.4667 -0.1767 5 6 1.6079 3.7708 -0.1763 6 6 0.6401 4.9096 -0.3699 7 6 2.9542 4.0321 0.0014 8 6 3.8436 2.9906 0.1796 9 6 5.3105 3.2763 0.3738 10 6 6.0284 3.1970 -0.9750 11 6 3.3850 1.6799 0.1782 12 7 4.2837 0.6225 0.3574 13 6 4.3102 -0.0486 1.5259 14 8 3.4954 0.2030 2.3884 15 6 5.3523 -1.1116 1.7609 16 6 5.1622 -1.7128 3.1549 17 6 6.2206 -2.7916 3.3937 18 6 6.0301 -3.3933 4.7875 19 6 7.0729 -4.4554 5.0229 20 1 7.7987 -4.6792 4.2551 21 6 7.1005 -5.1414 6.2186 22 7 6.2170 -4.8686 7.1539 23 14 8.3936 -6.4574 6.5108 24 1 9.7463 -5.8527 6.4130 25 1 8.2086 -7.0415 7.8635 26 1 8.2534 -7.5248 5.4878 27 1 -0.3634 0.5260 0.8828 28 1 -0.3633 0.5015 -0.8971 29 1 -0.3633 -1.0276 0.0141 30 1 1.8934 -0.5138 -0.8900 31 1 1.8933 -0.5138 0.8900 32 1 0.0964 2.2658 -0.3198 33 1 0.2629 5.2346 0.5997 34 1 1.1494 5.7402 -0.8586 35 1 -0.1919 4.5777 -0.9908 36 1 3.3103 5.0517 0.0016 37 1 5.4338 4.2750 0.7929 38 1 5.7367 2.5408 1.0561 39 1 5.5462 3.8706 -1.6834 40 1 7.0713 3.4881 -0.8491 41 1 5.9793 2.1759 -1.3532 42 1 4.8876 0.3724 -0.3592 43 1 5.2484 -1.8947 1.0098 44 1 6.3457 -0.6688 1.6890 45 1 5.2664 -0.9296 3.9058 46 1 4.1688 -2.1556 3.2272 47 1 6.1168 -3.5750 2.6429 48 1 7.2138 -2.3484 3.3216 49 1 6.1336 -2.6101 5.5386 50 1 5.0369 -3.8366 4.8593 51 1 6.2361 -5.3514 7.9949 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000588985603.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:59:31 Heat of formation + Delta-G solvation = -60.095601 kcal Electronic energy + Delta-G solvation = -26313.160606 eV Core-core repulsion = 22789.468039 eV Total energy + Delta-G solvation = -3523.692566 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 317.210 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -40.87218 -38.95471 -35.58384 -35.25484 -34.75205 -33.25279 -32.58972 -30.90693 -29.66917 -28.90519 -26.91056 -25.41961 -24.81062 -23.63681 -22.41732 -20.83834 -20.24546 -20.07362 -19.95179 -17.68063 -16.87120 -16.48089 -16.13502 -15.41628 -15.10222 -14.80084 -14.57201 -14.39768 -14.15680 -14.08271 -13.89175 -13.77413 -13.57597 -13.12313 -12.72870 -12.61057 -12.42211 -12.18714 -12.13802 -11.92177 -11.79601 -11.68857 -11.59864 -11.33453 -11.15002 -11.06309 -11.02442 -10.94878 -10.53147 -10.52054 -10.40449 -9.87623 -9.61309 -9.48757 -9.22662 -8.99144 -8.74821 -8.46981 -8.29203 -5.94019 -3.96668 1.07714 1.21328 2.67672 3.11175 3.35935 3.40324 3.42527 3.48686 4.44562 4.49372 4.49817 4.58772 4.83685 4.89046 5.00491 5.04888 5.06202 5.08927 5.14026 5.23818 5.30611 5.33488 5.35616 5.36735 5.41161 5.45143 5.51354 5.64157 5.65842 5.70260 5.79533 5.83570 5.87016 5.95984 5.96440 6.07429 6.13837 6.24536 6.30128 6.38090 6.45985 6.48305 6.55375 6.84289 6.93091 7.02480 7.20600 7.35862 7.74871 7.91117 8.07247 8.26821 8.48912 9.10845 9.66821 11.17240 Molecular weight = 317.21amu Principal moments of inertia in cm(-1) A = 0.019701 B = 0.002300 C = 0.002161 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1420.930182 B =12171.262128 C =12955.910897 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.089 4.089 3 C -0.059 4.059 4 C -0.123 4.123 5 C -0.082 4.082 6 C -0.113 4.113 7 C -0.121 4.121 8 C -0.074 4.074 9 C -0.085 4.085 10 C -0.143 4.143 11 C 0.133 3.867 12 N -0.690 5.690 13 C 0.514 3.486 14 O -0.518 6.518 15 C -0.138 4.138 16 C -0.103 4.103 17 C -0.110 4.110 18 C 0.020 3.980 19 C -0.521 4.521 20 H 0.054 0.946 21 C 0.055 3.945 22 N -0.895 5.895 23 Si 0.892 3.108 24 H -0.277 1.277 25 H -0.288 1.288 26 H -0.277 1.277 27 H 0.058 0.942 28 H 0.055 0.945 29 H 0.057 0.943 30 H 0.072 0.928 31 H 0.085 0.915 32 H 0.128 0.872 33 H 0.070 0.930 34 H 0.065 0.935 35 H 0.065 0.935 36 H 0.122 0.878 37 H 0.071 0.929 38 H 0.073 0.927 39 H 0.055 0.945 40 H 0.059 0.941 41 H 0.053 0.947 42 H 0.405 0.595 43 H 0.091 0.909 44 H 0.092 0.908 45 H 0.063 0.937 46 H 0.063 0.937 47 H 0.046 0.954 48 H 0.046 0.954 49 H 0.015 0.985 50 H 0.016 0.984 51 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.338 19.514 -21.721 30.366 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.125 4.125 3 C -0.060 4.060 4 C -0.142 4.142 5 C -0.082 4.082 6 C -0.170 4.170 7 C -0.139 4.139 8 C -0.075 4.075 9 C -0.122 4.122 10 C -0.201 4.201 11 C 0.041 3.959 12 N -0.341 5.341 13 C 0.302 3.698 14 O -0.392 6.392 15 C -0.178 4.178 16 C -0.141 4.141 17 C -0.148 4.148 18 C -0.017 4.017 19 C -0.559 4.559 20 H 0.072 0.928 21 C -0.146 4.146 22 N -0.535 5.535 23 Si 0.719 3.281 24 H -0.203 1.203 25 H -0.213 1.213 26 H -0.203 1.203 27 H 0.077 0.923 28 H 0.074 0.926 29 H 0.076 0.924 30 H 0.090 0.910 31 H 0.104 0.896 32 H 0.146 0.854 33 H 0.089 0.911 34 H 0.084 0.916 35 H 0.084 0.916 36 H 0.140 0.860 37 H 0.090 0.910 38 H 0.092 0.908 39 H 0.074 0.926 40 H 0.078 0.922 41 H 0.072 0.928 42 H 0.242 0.758 43 H 0.110 0.890 44 H 0.110 0.890 45 H 0.082 0.918 46 H 0.082 0.918 47 H 0.065 0.935 48 H 0.065 0.935 49 H 0.034 0.966 50 H 0.034 0.966 51 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -8.958 19.617 -20.872 30.012 hybrid contribution 1.009 -0.838 -0.082 1.314 sum -7.948 18.779 -20.954 29.239 Atomic orbital electron populations 1.21816 0.95253 1.01958 1.01727 1.20518 0.96226 0.92844 1.02960 1.20066 0.92406 0.96077 0.97485 1.20920 0.99647 0.91293 1.02301 1.19908 0.94311 0.94780 0.99191 1.20777 0.97957 0.96086 1.02141 1.20732 0.92360 0.98317 1.02515 1.20000 0.96164 0.92002 0.99385 1.20484 0.90866 1.02565 0.98294 1.21712 1.00036 1.01861 0.96445 1.17171 0.88926 0.86741 1.03023 1.43506 1.39801 1.33740 1.17064 1.21240 0.85681 0.82099 0.80758 1.90733 1.39522 1.65585 1.43331 1.21809 0.97612 0.96605 1.01754 1.21456 1.00805 0.98943 0.92892 1.21648 0.96390 0.95926 1.00788 1.19091 0.96985 0.95384 0.90232 1.21242 1.14715 1.19584 1.00356 0.92815 1.25045 0.95956 0.97324 0.96256 1.69964 1.35443 1.41854 1.06207 0.86671 0.82112 0.82053 0.77218 1.20287 1.21327 1.20290 0.92277 0.92624 0.92355 0.90971 0.89643 0.85431 0.91125 0.91622 0.91599 0.86020 0.90984 0.90810 0.92577 0.92194 0.92821 0.75849 0.89034 0.88985 0.91793 0.91788 0.93473 0.93473 0.96614 0.96609 0.92986 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.41 8.60 37.16 0.32 -1.09 16 2 C -0.09 -0.99 5.65 -27.88 -0.16 -1.15 16 3 C -0.06 -0.69 5.63 -104.44 -0.59 -1.28 16 4 C -0.12 -1.28 8.65 -39.61 -0.34 -1.62 16 5 C -0.08 -0.78 5.88 -104.59 -0.62 -1.40 16 6 C -0.11 -0.76 10.01 36.00 0.36 -0.40 16 7 C -0.12 -1.18 9.33 -39.61 -0.37 -1.55 16 8 C -0.07 -0.79 5.15 -104.44 -0.54 -1.33 16 9 C -0.08 -0.76 5.77 -27.88 -0.16 -0.92 16 10 C -0.14 -1.00 9.90 37.16 0.37 -0.63 16 11 C 0.13 1.56 5.39 -83.70 -0.45 1.11 16 12 N -0.69 -7.40 3.83 -9.86 -0.04 -7.43 16 13 C 0.51 7.12 6.79 -10.98 -0.07 7.05 16 14 O -0.52 -9.45 14.53 5.55 0.08 -9.37 16 15 C -0.14 -1.80 5.70 -27.88 -0.16 -1.95 16 16 C -0.10 -1.83 4.50 -26.73 -0.12 -1.95 16 17 C -0.11 -2.26 5.15 -26.73 -0.14 -2.40 16 18 C 0.02 0.54 4.97 -27.88 -0.14 0.40 16 19 C -0.52 -15.06 9.11 -34.44 -0.31 -15.37 16 20 H 0.05 1.49 7.74 -52.48 -0.41 1.08 16 21 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 22 N -0.90 -27.66 13.29 55.43 0.74 -26.93 16 23 Si 0.89 21.99 29.54 -169.99 -5.02 16.97 16 24 H -0.28 -6.69 7.11 56.52 0.40 -6.28 16 25 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 26 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 27 H 0.06 0.59 7.86 -51.93 -0.41 0.18 16 28 H 0.05 0.44 7.17 -51.93 -0.37 0.06 16 29 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 30 H 0.07 0.72 8.14 -51.93 -0.42 0.29 16 31 H 0.09 1.19 5.93 -51.93 -0.31 0.88 16 32 H 0.13 1.12 5.93 -52.48 -0.31 0.81 16 33 H 0.07 0.46 8.14 -51.93 -0.42 0.03 16 34 H 0.06 0.37 8.08 -51.93 -0.42 -0.05 16 35 H 0.07 0.38 8.08 -51.93 -0.42 -0.04 16 36 H 0.12 0.95 8.06 -52.48 -0.42 0.53 16 37 H 0.07 0.59 8.06 -51.93 -0.42 0.17 16 38 H 0.07 0.75 7.60 -51.93 -0.39 0.36 16 39 H 0.06 0.38 8.14 -51.93 -0.42 -0.05 16 40 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 41 H 0.05 0.35 7.88 -51.93 -0.41 -0.06 16 42 H 0.40 3.13 8.57 -40.82 -0.35 2.78 16 43 H 0.09 1.01 8.14 -51.93 -0.42 0.59 16 44 H 0.09 1.03 8.14 -51.93 -0.42 0.61 16 45 H 0.06 1.23 8.10 -51.93 -0.42 0.81 16 46 H 0.06 1.21 8.10 -51.93 -0.42 0.79 16 47 H 0.05 0.93 8.14 -51.93 -0.42 0.50 16 48 H 0.05 0.93 8.14 -51.93 -0.42 0.51 16 49 H 0.02 0.44 8.14 -51.92 -0.42 0.02 16 50 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 51 H 0.26 7.59 8.31 -40.82 -0.34 7.25 16 LS Contribution 409.20 15.07 6.17 6.17 Total: -1.00 -34.08 409.20 -10.56 -44.64 By element: Atomic # 1 Polarization: 8.19 SS G_CDS: -9.27 Total: -1.08 kcal Atomic # 6 Polarization: -19.75 SS G_CDS: -3.22 Total: -22.97 kcal Atomic # 7 Polarization: -35.06 SS G_CDS: 0.70 Total: -34.36 kcal Atomic # 8 Polarization: -9.45 SS G_CDS: 0.08 Total: -9.37 kcal Atomic # 14 Polarization: 21.99 SS G_CDS: -5.02 Total: 16.97 kcal Total LS contribution 6.17 Total: 6.17 kcal Total: -34.08 -10.56 -44.64 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000588985603.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.453 kcal (2) G-P(sol) polarization free energy of solvation -34.083 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.536 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.559 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.642 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.096 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds