Wall clock time and date at job start Tue Mar 31 2020 11:19:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38231 * 120.00066 * 2 1 4 4 C 1.38233 * 120.00258 * 180.02562 * 3 2 1 5 5 C 1.38238 * 120.00095 * 0.02562 * 4 3 2 6 6 C 1.50699 * 120.00301 * 179.97438 * 5 4 3 7 7 C 1.52997 * 109.47078 * 89.99749 * 6 5 4 8 8 C 1.53006 * 109.47127 * 60.00337 * 7 6 5 9 9 C 1.52997 * 109.47232 * 300.00215 * 7 6 5 10 10 N 1.46500 * 109.47007 * 180.02562 * 7 6 5 11 11 C 1.34781 * 120.00080 * 180.02562 * 10 7 6 12 12 O 1.21288 * 119.99801 * 359.97438 * 11 10 7 13 13 C 1.50699 * 120.00152 * 179.97438 * 11 10 7 14 14 C 1.52997 * 109.47078 * 179.97438 * 13 11 10 15 15 C 1.53002 * 109.47143 * 180.02562 * 14 13 11 16 16 C 1.52997 * 109.47143 * 179.97438 * 15 14 13 17 17 C 1.50699 * 109.47078 * 179.97438 * 16 15 14 18 18 H 1.07999 * 120.00019 * 0.02562 * 17 16 15 19 19 C 1.37877 * 120.00129 * 179.97438 * 17 16 15 20 20 N 1.31516 * 120.00113 * 0.02562 * 19 17 16 21 21 Si 1.86799 * 120.00043 * 179.97438 * 19 17 16 22 22 H 1.48506 * 109.47042 * 60.00680 * 21 19 17 23 23 H 1.48503 * 109.47142 * 180.02562 * 21 19 17 24 24 H 1.48492 * 109.47444 * 300.00363 * 21 19 17 25 25 C 1.38238 * 119.99529 * 0.24862 * 5 4 3 26 26 C 1.38237 * 119.99827 * 179.97438 * 2 1 3 27 27 H 1.08996 * 109.46919 * 90.00024 * 1 2 3 28 28 H 1.09001 * 109.46643 * 209.99672 * 1 2 3 29 29 H 1.08995 * 109.47318 * 329.99775 * 1 2 3 30 30 H 1.08001 * 120.00226 * 359.97438 * 3 2 1 31 31 H 1.08007 * 120.00520 * 179.97438 * 4 3 2 32 32 H 1.09002 * 109.46959 * 329.99838 * 6 5 4 33 33 H 1.08996 * 109.47258 * 209.99598 * 6 5 4 34 34 H 1.09001 * 109.47002 * 299.99574 * 8 7 6 35 35 H 1.08993 * 109.46955 * 60.00011 * 8 7 6 36 36 H 1.09000 * 109.47050 * 179.97438 * 8 7 6 37 37 H 1.09000 * 109.47140 * 180.02562 * 9 7 6 38 38 H 1.09001 * 109.47230 * 299.99295 * 9 7 6 39 39 H 1.09001 * 109.47375 * 60.00133 * 9 7 6 40 40 H 0.96998 * 120.00098 * 359.97438 * 10 7 6 41 41 H 1.08988 * 109.47079 * 299.99966 * 13 11 10 42 42 H 1.09002 * 109.46959 * 59.99590 * 13 11 10 43 43 H 1.09004 * 109.47261 * 300.00035 * 14 13 11 44 44 H 1.09002 * 109.47153 * 60.00207 * 14 13 11 45 45 H 1.09004 * 109.46930 * 300.00065 * 15 14 13 46 46 H 1.09002 * 109.47067 * 59.99982 * 15 14 13 47 47 H 1.09004 * 109.47261 * 299.99863 * 16 15 14 48 48 H 1.09002 * 109.47153 * 60.00035 * 16 15 14 49 49 H 0.96999 * 120.00366 * 179.97438 * 20 19 17 50 50 H 1.08001 * 119.99505 * 179.72781 * 25 5 4 51 51 H 1.07996 * 120.00300 * 0.02562 * 26 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1982 1.1971 0.0000 4 6 3.5805 1.1972 -0.0005 5 6 4.2718 0.0000 -0.0016 6 6 5.7787 0.0000 -0.0028 7 6 6.2898 -0.0006 1.4393 8 6 5.7804 -1.2502 2.1605 9 6 5.7804 1.2483 2.1615 10 7 7.7548 0.0000 1.4382 11 6 8.4297 -0.0008 2.6049 12 8 7.8241 -0.0017 3.6557 13 6 9.9367 -0.0008 2.6037 14 6 10.4478 -0.0013 4.0458 15 6 11.9778 -0.0006 4.0446 16 6 12.4889 -0.0004 5.4867 17 6 13.9959 -0.0003 5.4855 18 1 14.5352 0.0000 4.5498 19 6 14.6862 0.0004 6.6790 20 7 14.0296 0.0005 7.8185 21 14 16.5542 -0.0003 6.6775 22 1 17.0491 1.2116 5.9763 23 1 17.0503 0.0000 8.0772 24 1 17.0483 -1.2134 5.9780 25 6 3.5805 -1.1971 -0.0073 26 6 2.1982 -1.1972 0.0005 27 1 -0.3633 0.0000 -1.0276 28 1 -0.3633 -0.8900 0.5138 29 1 -0.3634 0.8899 0.5138 30 1 1.6582 2.1324 -0.0004 31 1 4.1206 2.1325 -0.0010 32 1 6.1417 0.8902 -0.5165 33 1 6.1417 -0.8897 -0.5172 34 1 4.6904 -1.2502 2.1613 35 1 6.1434 -2.1399 1.6460 36 1 6.1449 -1.2508 3.1877 37 1 6.1449 1.2481 3.1887 38 1 6.1434 2.1386 1.6478 39 1 4.6904 1.2483 2.1624 40 1 8.2392 0.0003 0.5978 41 1 10.2996 -0.8903 2.0889 42 1 10.2996 0.8896 2.0902 43 1 10.0848 0.8886 4.5602 44 1 10.0849 -0.8914 4.5596 45 1 12.3411 -0.8902 3.5300 46 1 12.3403 0.8898 3.5309 47 1 12.1256 0.8895 6.0009 48 1 12.1264 -0.8905 6.0008 49 1 14.5152 0.0006 8.6582 50 1 4.1206 -2.1324 -0.0126 51 1 1.6582 -2.1325 0.0005 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000591314304.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:19:02 Heat of formation + Delta-G solvation = -54.429414 kcal Electronic energy + Delta-G solvation = -25677.405677 eV Core-core repulsion = 22153.958815 eV Total energy + Delta-G solvation = -3523.446862 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 317.210 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -40.57344 -39.54078 -36.92781 -34.81648 -33.69047 -32.64132 -31.55024 -31.32347 -29.48791 -28.71024 -27.38538 -25.86758 -25.32170 -22.95631 -22.67687 -21.39933 -20.27953 -19.90759 -19.57560 -17.04646 -16.40224 -16.17814 -15.88387 -15.86990 -15.58948 -15.26682 -14.47660 -14.36432 -14.25536 -13.86603 -13.83909 -13.68629 -13.68172 -13.06266 -12.72054 -12.62357 -12.44753 -12.36091 -12.06321 -11.97631 -11.76332 -11.65190 -11.57315 -11.37622 -11.24128 -11.21241 -11.19691 -10.93547 -10.50772 -10.48210 -10.37160 -9.57829 -9.54125 -9.21399 -9.16504 -9.09308 -8.95707 -8.77106 -8.27915 -5.92808 -3.95380 0.97653 1.08570 2.80300 3.09787 3.36846 3.41137 3.43266 3.43925 4.41152 4.43541 4.50787 4.54359 4.62731 4.66200 4.68931 4.95459 4.96770 5.02173 5.14647 5.19704 5.26427 5.35364 5.37005 5.41326 5.42854 5.45161 5.45634 5.64486 5.64534 5.73968 5.74533 5.81385 5.83782 5.93347 6.08562 6.17905 6.23170 6.23956 6.26968 6.33326 6.34816 6.52674 6.59907 6.68871 6.88013 7.06061 7.23412 7.55200 7.76450 7.93118 8.08703 8.36892 8.50536 9.12143 9.68057 11.18425 Molecular weight = 317.21amu Principal moments of inertia in cm(-1) A = 0.046055 B = 0.001701 C = 0.001690 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 607.819898 B =16461.002919 C =16561.903381 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.090 4.090 3 C -0.121 4.121 4 C -0.108 4.108 5 C -0.078 4.078 6 C -0.084 4.084 7 C 0.181 3.819 8 C -0.165 4.165 9 C -0.165 4.165 10 N -0.733 5.733 11 C 0.515 3.485 12 O -0.530 6.530 13 C -0.140 4.140 14 C -0.102 4.102 15 C -0.110 4.110 16 C 0.020 3.980 17 C -0.521 4.521 18 H 0.054 0.946 19 C 0.056 3.944 20 N -0.895 5.895 21 Si 0.892 3.108 22 H -0.277 1.277 23 H -0.288 1.288 24 H -0.277 1.277 25 C -0.108 4.108 26 C -0.121 4.121 27 H 0.069 0.931 28 H 0.065 0.935 29 H 0.065 0.935 30 H 0.120 0.880 31 H 0.122 0.878 32 H 0.078 0.922 33 H 0.078 0.922 34 H 0.064 0.936 35 H 0.051 0.949 36 H 0.080 0.920 37 H 0.080 0.920 38 H 0.051 0.949 39 H 0.064 0.936 40 H 0.397 0.603 41 H 0.089 0.911 42 H 0.089 0.911 43 H 0.063 0.937 44 H 0.063 0.937 45 H 0.046 0.954 46 H 0.046 0.954 47 H 0.016 0.984 48 H 0.016 0.984 49 H 0.260 0.740 50 H 0.122 0.878 51 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.668 0.001 -21.676 34.366 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.090 4.090 3 C -0.139 4.139 4 C -0.126 4.126 5 C -0.078 4.078 6 C -0.121 4.121 7 C 0.095 3.905 8 C -0.223 4.223 9 C -0.223 4.223 10 N -0.387 5.387 11 C 0.303 3.697 12 O -0.406 6.406 13 C -0.180 4.180 14 C -0.140 4.140 15 C -0.148 4.148 16 C -0.017 4.017 17 C -0.560 4.560 18 H 0.072 0.928 19 C -0.145 4.145 20 N -0.534 5.534 21 Si 0.719 3.281 22 H -0.203 1.203 23 H -0.213 1.213 24 H -0.203 1.203 25 C -0.126 4.126 26 C -0.139 4.139 27 H 0.087 0.913 28 H 0.084 0.916 29 H 0.084 0.916 30 H 0.138 0.862 31 H 0.140 0.860 32 H 0.096 0.904 33 H 0.096 0.904 34 H 0.083 0.917 35 H 0.071 0.929 36 H 0.098 0.902 37 H 0.098 0.902 38 H 0.071 0.929 39 H 0.083 0.917 40 H 0.231 0.769 41 H 0.107 0.893 42 H 0.107 0.893 43 H 0.081 0.919 44 H 0.081 0.919 45 H 0.065 0.935 46 H 0.065 0.935 47 H 0.034 0.966 48 H 0.034 0.966 49 H 0.070 0.930 50 H 0.140 0.860 51 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -27.082 0.001 -20.698 34.086 hybrid contribution 1.306 0.000 -0.420 1.372 sum -25.777 0.001 -21.118 33.323 Atomic orbital electron populations 1.20795 0.91328 1.02809 1.02235 1.19927 0.96048 0.93263 0.99808 1.21018 0.94158 0.97533 1.01178 1.21060 0.94104 0.97625 0.99788 1.19586 0.94684 0.93272 1.00268 1.20850 0.91914 1.03395 0.95976 1.20146 0.79662 0.96489 0.94204 1.22289 1.01250 0.96000 1.02772 1.22291 1.01252 0.96007 1.02768 1.46246 1.06305 1.77158 1.08941 1.21011 0.90674 0.74825 0.83222 1.90645 1.70284 1.48251 1.31382 1.21801 0.90457 1.03824 1.01880 1.21435 0.97157 1.02893 0.92538 1.21651 0.91975 1.00004 1.01180 1.19092 0.95341 0.97294 0.89989 1.21255 0.92036 1.50510 0.92154 0.92823 1.25038 0.98314 0.95465 0.95716 1.69965 1.35402 1.50860 0.97222 0.86673 0.85969 0.78528 0.76884 1.20301 1.21323 1.20306 1.21061 0.94104 0.97619 0.99795 1.21021 0.94156 0.97532 1.01175 0.91262 0.91565 0.91567 0.86168 0.86013 0.90366 0.90367 0.91699 0.92943 0.90155 0.90157 0.92942 0.91694 0.76890 0.89304 0.89307 0.91855 0.91851 0.93533 0.93537 0.96604 0.96607 0.93012 0.86017 0.86166 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.59 10.01 36.01 0.36 -0.23 16 2 C -0.09 -0.66 5.88 -104.62 -0.62 -1.27 16 3 C -0.12 -0.89 9.70 -39.59 -0.38 -1.28 16 4 C -0.11 -0.82 7.88 -39.58 -0.31 -1.14 16 5 C -0.08 -0.60 4.00 -104.62 -0.42 -1.02 16 6 C -0.08 -0.59 4.57 -27.88 -0.13 -0.72 16 7 C 0.18 1.73 0.83 -131.82 -0.11 1.62 16 8 C -0.17 -1.78 7.82 37.16 0.29 -1.49 16 9 C -0.17 -1.78 7.81 37.16 0.29 -1.49 16 10 N -0.73 -7.24 5.11 -47.60 -0.24 -7.48 16 11 C 0.51 7.00 7.25 -10.98 -0.08 6.92 16 12 O -0.53 -9.21 12.19 5.55 0.07 -9.15 16 13 C -0.14 -1.85 5.70 -27.88 -0.16 -2.01 16 14 C -0.10 -1.84 4.50 -26.73 -0.12 -1.96 16 15 C -0.11 -2.30 5.15 -26.73 -0.14 -2.44 16 16 C 0.02 0.53 4.97 -27.88 -0.14 0.40 16 17 C -0.52 -15.17 9.11 -34.44 -0.31 -15.49 16 18 H 0.05 1.50 7.74 -52.49 -0.41 1.09 16 19 C 0.06 1.64 5.46 -17.82 -0.10 1.54 16 20 N -0.90 -27.70 13.29 55.43 0.74 -26.97 16 21 Si 0.89 22.05 29.54 -169.99 -5.02 17.03 16 22 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 23 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 24 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 25 C -0.11 -0.82 7.90 -39.58 -0.31 -1.14 16 26 C -0.12 -0.89 9.70 -39.58 -0.38 -1.28 16 27 H 0.07 0.30 8.14 -51.93 -0.42 -0.12 16 28 H 0.07 0.30 8.09 -51.93 -0.42 -0.12 16 29 H 0.07 0.30 8.09 -51.93 -0.42 -0.12 16 30 H 0.12 0.69 8.06 -52.49 -0.42 0.27 16 31 H 0.12 0.80 8.03 -52.48 -0.42 0.38 16 32 H 0.08 0.49 8.09 -51.93 -0.42 0.07 16 33 H 0.08 0.49 8.08 -51.93 -0.42 0.07 16 34 H 0.06 0.65 6.19 -51.93 -0.32 0.33 16 35 H 0.05 0.52 8.14 -51.93 -0.42 0.09 16 36 H 0.08 1.12 6.17 -51.93 -0.32 0.80 16 37 H 0.08 1.12 6.17 -51.93 -0.32 0.80 16 38 H 0.05 0.52 8.14 -51.93 -0.42 0.09 16 39 H 0.06 0.65 6.17 -51.93 -0.32 0.33 16 40 H 0.40 2.76 8.47 -40.82 -0.35 2.42 16 41 H 0.09 1.03 8.14 -51.94 -0.42 0.60 16 42 H 0.09 1.03 8.14 -51.93 -0.42 0.60 16 43 H 0.06 1.22 8.10 -51.93 -0.42 0.80 16 44 H 0.06 1.22 8.10 -51.93 -0.42 0.80 16 45 H 0.05 0.93 8.14 -51.93 -0.42 0.51 16 46 H 0.05 0.93 8.14 -51.93 -0.42 0.51 16 47 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 48 H 0.02 0.45 8.14 -51.93 -0.42 0.02 16 49 H 0.26 7.60 8.31 -40.82 -0.34 7.26 16 50 H 0.12 0.80 8.04 -52.49 -0.42 0.38 16 51 H 0.12 0.69 8.06 -52.49 -0.42 0.27 16 LS Contribution 402.93 15.07 6.07 6.07 Total: -1.00 -33.71 402.93 -10.34 -44.05 By element: Atomic # 1 Polarization: 8.10 SS G_CDS: -9.18 Total: -1.09 kcal Atomic # 6 Polarization: -19.71 SS G_CDS: -2.77 Total: -22.48 kcal Atomic # 7 Polarization: -34.94 SS G_CDS: 0.49 Total: -34.45 kcal Atomic # 8 Polarization: -9.21 SS G_CDS: 0.07 Total: -9.15 kcal Atomic # 14 Polarization: 22.05 SS G_CDS: -5.02 Total: 17.03 kcal Total LS contribution 6.07 Total: 6.07 kcal Total: -33.71 -10.34 -44.05 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000591314304.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.375 kcal (2) G-P(sol) polarization free energy of solvation -33.714 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.089 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.341 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.055 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.429 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds