Wall clock time and date at job start Tue Mar 31 2020 11:19:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38231 * 120.00066 * 2 1 4 4 C 1.38233 * 120.00258 * 180.02562 * 3 2 1 5 5 C 1.38238 * 120.00095 * 0.02562 * 4 3 2 6 6 C 1.50699 * 120.00301 * 179.97438 * 5 4 3 7 7 C 1.52997 * 109.47078 * 89.99749 * 6 5 4 8 8 C 1.53006 * 109.47127 * 60.00337 * 7 6 5 9 9 C 1.52997 * 109.47232 * 300.00215 * 7 6 5 10 10 N 1.46500 * 109.47007 * 180.02562 * 7 6 5 11 11 C 1.34781 * 120.00080 * 180.02562 * 10 7 6 12 12 O 1.21288 * 119.99801 * 359.97438 * 11 10 7 13 13 C 1.50699 * 120.00152 * 179.97438 * 11 10 7 14 14 C 1.52997 * 109.47078 * 179.97438 * 13 11 10 15 15 C 1.53002 * 109.47143 * 180.02562 * 14 13 11 16 16 C 1.52997 * 109.47143 * 179.97438 * 15 14 13 17 17 C 1.50699 * 109.47078 * 179.97438 * 16 15 14 18 18 H 1.07999 * 120.00019 * 0.02562 * 17 16 15 19 19 C 1.37877 * 120.00129 * 179.97438 * 17 16 15 20 20 N 1.31516 * 120.00113 * 0.02562 * 19 17 16 21 21 Si 1.86799 * 120.00043 * 179.97438 * 19 17 16 22 22 H 1.48506 * 109.47042 * 60.00680 * 21 19 17 23 23 H 1.48503 * 109.47142 * 180.02562 * 21 19 17 24 24 H 1.48492 * 109.47444 * 300.00363 * 21 19 17 25 25 C 1.38238 * 119.99529 * 0.24862 * 5 4 3 26 26 C 1.38237 * 119.99827 * 179.97438 * 2 1 3 27 27 H 1.08996 * 109.46919 * 90.00024 * 1 2 3 28 28 H 1.09001 * 109.46643 * 209.99672 * 1 2 3 29 29 H 1.08995 * 109.47318 * 329.99775 * 1 2 3 30 30 H 1.08001 * 120.00226 * 359.97438 * 3 2 1 31 31 H 1.08007 * 120.00520 * 179.97438 * 4 3 2 32 32 H 1.09002 * 109.46959 * 329.99838 * 6 5 4 33 33 H 1.08996 * 109.47258 * 209.99598 * 6 5 4 34 34 H 1.09001 * 109.47002 * 299.99574 * 8 7 6 35 35 H 1.08993 * 109.46955 * 60.00011 * 8 7 6 36 36 H 1.09000 * 109.47050 * 179.97438 * 8 7 6 37 37 H 1.09000 * 109.47140 * 180.02562 * 9 7 6 38 38 H 1.09001 * 109.47230 * 299.99295 * 9 7 6 39 39 H 1.09001 * 109.47375 * 60.00133 * 9 7 6 40 40 H 0.96998 * 120.00098 * 359.97438 * 10 7 6 41 41 H 1.08988 * 109.47079 * 299.99966 * 13 11 10 42 42 H 1.09002 * 109.46959 * 59.99590 * 13 11 10 43 43 H 1.09004 * 109.47261 * 300.00035 * 14 13 11 44 44 H 1.09002 * 109.47153 * 60.00207 * 14 13 11 45 45 H 1.09004 * 109.46930 * 300.00065 * 15 14 13 46 46 H 1.09002 * 109.47067 * 59.99982 * 15 14 13 47 47 H 1.09004 * 109.47261 * 299.99863 * 16 15 14 48 48 H 1.09002 * 109.47153 * 60.00035 * 16 15 14 49 49 H 0.96999 * 120.00366 * 179.97438 * 20 19 17 50 50 H 1.08001 * 119.99505 * 179.72781 * 25 5 4 51 51 H 1.07996 * 120.00300 * 0.02562 * 26 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1982 1.1971 0.0000 4 6 3.5805 1.1972 -0.0005 5 6 4.2718 0.0000 -0.0016 6 6 5.7787 0.0000 -0.0028 7 6 6.2898 -0.0006 1.4393 8 6 5.7804 -1.2502 2.1605 9 6 5.7804 1.2483 2.1615 10 7 7.7548 0.0000 1.4382 11 6 8.4297 -0.0008 2.6049 12 8 7.8241 -0.0017 3.6557 13 6 9.9367 -0.0008 2.6037 14 6 10.4478 -0.0013 4.0458 15 6 11.9778 -0.0006 4.0446 16 6 12.4889 -0.0004 5.4867 17 6 13.9959 -0.0003 5.4855 18 1 14.5352 0.0000 4.5498 19 6 14.6862 0.0004 6.6790 20 7 14.0296 0.0005 7.8185 21 14 16.5542 -0.0003 6.6775 22 1 17.0491 1.2116 5.9763 23 1 17.0503 0.0000 8.0772 24 1 17.0483 -1.2134 5.9780 25 6 3.5805 -1.1971 -0.0073 26 6 2.1982 -1.1972 0.0005 27 1 -0.3633 0.0000 -1.0276 28 1 -0.3633 -0.8900 0.5138 29 1 -0.3634 0.8899 0.5138 30 1 1.6582 2.1324 -0.0004 31 1 4.1206 2.1325 -0.0010 32 1 6.1417 0.8902 -0.5165 33 1 6.1417 -0.8897 -0.5172 34 1 4.6904 -1.2502 2.1613 35 1 6.1434 -2.1399 1.6460 36 1 6.1449 -1.2508 3.1877 37 1 6.1449 1.2481 3.1887 38 1 6.1434 2.1386 1.6478 39 1 4.6904 1.2483 2.1624 40 1 8.2392 0.0003 0.5978 41 1 10.2996 -0.8903 2.0889 42 1 10.2996 0.8896 2.0902 43 1 10.0848 0.8886 4.5602 44 1 10.0849 -0.8914 4.5596 45 1 12.3411 -0.8902 3.5300 46 1 12.3403 0.8898 3.5309 47 1 12.1256 0.8895 6.0009 48 1 12.1264 -0.8905 6.0008 49 1 14.5152 0.0006 8.6582 50 1 4.1206 -2.1324 -0.0126 51 1 1.6582 -2.1325 0.0005 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000591314304.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:19:01 Heat of formation + Delta-G solvation = -72.742979 kcal Electronic energy + Delta-G solvation = -25678.199813 eV Core-core repulsion = 22153.958815 eV Total energy + Delta-G solvation = -3524.240998 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 317.210 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.39904 -40.28158 -37.81704 -36.52309 -34.60676 -34.38194 -32.55282 -31.84955 -31.05720 -29.35722 -28.24714 -27.45756 -26.14042 -24.31090 -23.49028 -22.30765 -21.66903 -21.03901 -20.48660 -18.40524 -18.04412 -17.06730 -16.82332 -16.62107 -16.50016 -16.40401 -15.85246 -15.55519 -15.16617 -14.83221 -14.66638 -14.52464 -14.40140 -14.27057 -13.81347 -13.64920 -13.56500 -13.31461 -13.17493 -13.09616 -12.89149 -12.77549 -12.73218 -12.53142 -12.36161 -12.14353 -12.12214 -12.01298 -11.97925 -11.89930 -11.73113 -11.36079 -11.32664 -11.10383 -10.53891 -10.46574 -10.03326 -9.74951 -9.31683 -8.17946 -6.30453 0.43438 0.54705 1.40578 1.44760 1.52614 1.75312 2.22696 2.42686 2.87385 3.14500 3.73668 3.85588 3.89529 4.01710 4.06473 4.09230 4.13301 4.18196 4.18977 4.24866 4.43293 4.63221 4.65042 4.69966 4.71094 4.75584 4.80184 4.83671 4.84560 4.87793 4.90059 4.90778 4.96792 4.97364 5.07063 5.21481 5.23846 5.31410 5.33734 5.35377 5.36682 5.39642 5.55592 5.57370 5.67790 5.75583 5.75992 5.78886 5.88538 6.17275 6.25875 6.70276 6.87783 7.39131 7.40740 8.93982 Molecular weight = 317.21amu Principal moments of inertia in cm(-1) A = 0.046055 B = 0.001701 C = 0.001690 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 607.819898 B =16461.002919 C =16561.903381 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.100 4.100 3 C -0.133 4.133 4 C -0.117 4.117 5 C -0.088 4.088 6 C -0.073 4.073 7 C 0.181 3.819 8 C -0.160 4.160 9 C -0.160 4.160 10 N -0.714 5.714 11 C 0.513 3.487 12 O -0.576 6.576 13 C -0.129 4.129 14 C -0.094 4.094 15 C -0.096 4.096 16 C 0.018 3.982 17 C -0.544 4.544 18 H 0.066 0.934 19 C -0.006 4.006 20 N -0.937 5.937 21 Si 0.970 3.030 22 H -0.264 1.264 23 H -0.285 1.285 24 H -0.264 1.264 25 C -0.117 4.117 26 C -0.133 4.133 27 H 0.077 0.923 28 H 0.070 0.930 29 H 0.070 0.930 30 H 0.132 0.868 31 H 0.130 0.870 32 H 0.093 0.907 33 H 0.093 0.907 34 H 0.069 0.931 35 H 0.062 0.938 36 H 0.043 0.957 37 H 0.043 0.957 38 H 0.062 0.938 39 H 0.069 0.931 40 H 0.416 0.584 41 H 0.116 0.884 42 H 0.116 0.884 43 H 0.041 0.959 44 H 0.041 0.959 45 H 0.060 0.940 46 H 0.060 0.940 47 H -0.016 1.016 48 H -0.016 1.016 49 H 0.263 0.737 50 H 0.130 0.870 51 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.029 0.001 -24.798 35.951 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.100 4.100 3 C -0.151 4.151 4 C -0.134 4.134 5 C -0.089 4.089 6 C -0.111 4.111 7 C 0.096 3.904 8 C -0.218 4.218 9 C -0.218 4.218 10 N -0.367 5.367 11 C 0.301 3.699 12 O -0.455 6.455 13 C -0.169 4.169 14 C -0.132 4.132 15 C -0.133 4.133 16 C -0.019 4.019 17 C -0.582 4.582 18 H 0.084 0.916 19 C -0.203 4.203 20 N -0.578 5.578 21 Si 0.794 3.206 22 H -0.189 1.189 23 H -0.211 1.211 24 H -0.189 1.189 25 C -0.134 4.134 26 C -0.151 4.151 27 H 0.096 0.904 28 H 0.089 0.911 29 H 0.089 0.911 30 H 0.150 0.850 31 H 0.148 0.852 32 H 0.112 0.888 33 H 0.112 0.888 34 H 0.087 0.913 35 H 0.081 0.919 36 H 0.063 0.937 37 H 0.063 0.937 38 H 0.081 0.919 39 H 0.088 0.912 40 H 0.253 0.747 41 H 0.134 0.866 42 H 0.134 0.866 43 H 0.060 0.940 44 H 0.060 0.940 45 H 0.079 0.921 46 H 0.079 0.921 47 H 0.002 0.998 48 H 0.002 0.998 49 H 0.071 0.929 50 H 0.148 0.852 51 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -26.448 0.000 -23.886 35.637 hybrid contribution 1.007 0.000 0.587 1.166 sum -25.440 0.001 -23.299 34.497 Atomic orbital electron populations 1.20827 0.90047 1.03310 1.02905 1.20235 0.97211 0.93271 0.99331 1.21267 0.94404 0.98228 1.01224 1.21252 0.94421 0.98050 0.99724 1.19691 0.95030 0.93392 1.00763 1.20776 0.91468 1.04947 0.93880 1.20173 0.79234 0.95212 0.95803 1.22216 1.01517 0.97185 1.00877 1.22218 1.01522 0.97191 1.00872 1.46036 1.06573 1.75398 1.08697 1.21071 0.90870 0.74490 0.83503 1.90657 1.71071 1.50523 1.33277 1.21673 0.90254 1.06459 0.98507 1.21222 0.95260 1.00875 0.95893 1.21451 0.93631 1.01238 0.97012 1.19058 0.95057 0.94257 0.93502 1.21738 0.93135 1.50435 0.92885 0.91560 1.26097 1.04337 0.94733 0.95181 1.70129 1.37826 1.51773 0.98041 0.85431 0.78690 0.79342 0.77146 1.18898 1.21057 1.18912 1.21253 0.94420 0.98045 0.99727 1.21271 0.94404 0.98227 1.01221 0.90435 0.91081 0.91084 0.84995 0.85187 0.88824 0.88823 0.91256 0.91884 0.93740 0.93744 0.91883 0.91249 0.74652 0.86585 0.86592 0.94008 0.94002 0.92129 0.92136 0.99772 0.99776 0.92878 0.85184 0.84994 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.03 10.01 71.24 0.71 -0.32 16 2 C -0.10 -1.35 5.88 -19.87 -0.12 -1.47 16 3 C -0.13 -1.81 9.70 22.27 0.22 -1.60 16 4 C -0.12 -1.61 7.88 22.27 0.18 -1.43 16 5 C -0.09 -1.22 4.00 -19.86 -0.08 -1.30 16 6 C -0.07 -0.85 4.57 29.85 0.14 -0.71 16 7 C 0.18 3.22 0.83 3.60 0.00 3.22 16 8 C -0.16 -3.39 7.82 71.98 0.56 -2.82 16 9 C -0.16 -3.39 7.81 71.98 0.56 -2.83 16 10 N -0.71 -12.59 5.11 -422.91 -2.16 -14.75 16 11 C 0.51 13.52 7.25 87.66 0.64 14.15 16 12 O -0.58 -20.78 12.19 -3.05 -0.04 -20.82 16 13 C -0.13 -3.17 5.70 29.85 0.17 -3.00 16 14 C -0.09 -3.44 4.50 30.59 0.14 -3.31 16 15 C -0.10 -3.96 5.15 30.59 0.16 -3.81 16 16 C 0.02 1.02 4.97 29.85 0.15 1.17 16 17 C -0.54 -31.88 9.11 25.60 0.23 -31.65 16 18 H 0.07 3.63 7.74 -2.91 -0.02 3.60 16 19 C -0.01 -0.37 5.46 84.65 0.46 0.09 16 20 N -0.94 -59.48 13.29 21.45 0.28 -59.20 16 21 Si 0.97 45.06 29.54 68.60 2.03 47.09 16 22 H -0.26 -11.66 7.11 99.48 0.71 -10.95 16 23 H -0.29 -13.02 7.11 99.48 0.71 -12.31 16 24 H -0.26 -11.66 7.11 99.48 0.71 -10.96 16 25 C -0.12 -1.61 7.90 22.27 0.18 -1.43 16 26 C -0.13 -1.81 9.70 22.27 0.22 -1.60 16 27 H 0.08 0.57 8.14 -2.39 -0.02 0.55 16 28 H 0.07 0.56 8.09 -2.39 -0.02 0.54 16 29 H 0.07 0.56 8.09 -2.39 -0.02 0.54 16 30 H 0.13 1.37 8.06 -2.91 -0.02 1.34 16 31 H 0.13 1.49 8.03 -2.91 -0.02 1.47 16 32 H 0.09 0.83 8.09 -2.39 -0.02 0.81 16 33 H 0.09 0.83 8.08 -2.39 -0.02 0.81 16 34 H 0.07 1.38 6.19 -2.39 -0.01 1.36 16 35 H 0.06 1.16 8.14 -2.39 -0.02 1.14 16 36 H 0.04 1.28 6.17 -2.39 -0.01 1.27 16 37 H 0.04 1.28 6.17 -2.39 -0.01 1.27 16 38 H 0.06 1.16 8.14 -2.39 -0.02 1.14 16 39 H 0.07 1.38 6.17 -2.39 -0.01 1.36 16 40 H 0.42 4.28 8.47 -92.71 -0.79 3.49 16 41 H 0.12 2.27 8.14 -2.39 -0.02 2.25 16 42 H 0.12 2.27 8.14 -2.39 -0.02 2.25 16 43 H 0.04 1.68 8.10 -2.38 -0.02 1.66 16 44 H 0.04 1.68 8.10 -2.39 -0.02 1.66 16 45 H 0.06 2.34 8.14 -2.38 -0.02 2.32 16 46 H 0.06 2.33 8.14 -2.39 -0.02 2.31 16 47 H -0.02 -0.99 8.14 -2.38 -0.02 -1.00 16 48 H -0.02 -0.99 8.14 -2.39 -0.02 -1.01 16 49 H 0.26 15.64 8.31 -92.71 -0.77 14.87 16 50 H 0.13 1.49 8.04 -2.91 -0.02 1.46 16 51 H 0.13 1.37 8.06 -2.91 -0.02 1.34 16 Total: -1.00 -76.43 402.93 4.72 -71.70 By element: Atomic # 1 Polarization: 14.51 SS G_CDS: 0.10 Total: 14.61 kcal Atomic # 6 Polarization: -43.14 SS G_CDS: 4.51 Total: -38.63 kcal Atomic # 7 Polarization: -72.07 SS G_CDS: -1.87 Total: -73.95 kcal Atomic # 8 Polarization: -20.78 SS G_CDS: -0.04 Total: -20.82 kcal Atomic # 14 Polarization: 45.06 SS G_CDS: 2.03 Total: 47.09 kcal Total: -76.43 4.72 -71.70 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000591314304.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.041 kcal (2) G-P(sol) polarization free energy of solvation -76.425 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.467 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.724 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.702 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.743 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds