Wall clock time and date at job start Tue Mar 31 2020 12:23:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52991 * 109.47213 * 2 1 4 4 C 1.53002 * 109.47370 * 60.00123 * 3 2 1 5 5 C 1.53005 * 109.47226 * 299.99901 * 3 2 1 6 6 C 1.50703 * 109.47071 * 179.97438 * 3 2 1 7 7 C 1.38238 * 119.99990 * 179.97438 * 6 3 2 8 8 C 1.38232 * 119.99643 * 179.97438 * 7 6 3 9 9 C 1.38230 * 120.00706 * 359.97438 * 8 7 6 10 10 C 1.50700 * 120.00662 * 180.02562 * 9 8 7 11 11 N 1.46904 * 109.47037 * 89.99651 * 10 9 8 12 12 C 1.47439 * 111.00045 * 290.12992 * 11 10 9 13 13 C 1.54322 * 107.36952 * 236.65966 * 12 11 10 14 14 C 1.55398 * 102.90031 * 337.89642 * 13 12 11 15 15 O 1.42894 * 110.90261 * 277.37719 * 14 13 12 16 16 C 1.50696 * 111.02695 * 153.63025 * 14 13 12 17 17 H 1.07991 * 120.00591 * 247.60311 * 16 14 13 18 18 C 1.37885 * 119.99573 * 67.60648 * 16 14 13 19 19 N 1.31515 * 119.99698 * 359.97438 * 18 16 14 20 20 Si 1.86800 * 119.99798 * 179.97438 * 18 16 14 21 21 H 1.48497 * 109.47017 * 90.00001 * 20 18 16 22 22 H 1.48496 * 109.46853 * 209.99850 * 20 18 16 23 23 H 1.48496 * 109.47363 * 330.00128 * 20 18 16 24 24 C 1.47843 * 110.99640 * 169.28284 * 11 10 9 25 25 C 1.38238 * 119.99695 * 0.27471 * 9 8 7 26 26 C 1.38232 * 120.00068 * 359.97438 * 6 3 2 27 27 H 1.09000 * 109.47187 * 179.97438 * 1 2 3 28 28 H 1.08998 * 109.46844 * 300.00477 * 1 2 3 29 29 H 1.08997 * 109.46938 * 59.99896 * 1 2 3 30 30 H 1.08998 * 109.46844 * 239.99523 * 2 1 3 31 31 H 1.08997 * 109.46938 * 120.00104 * 2 1 3 32 32 H 1.09002 * 109.47049 * 179.97438 * 4 3 2 33 33 H 1.08999 * 109.47151 * 299.99688 * 4 3 2 34 34 H 1.08997 * 109.47105 * 59.99697 * 4 3 2 35 35 H 1.09000 * 109.46855 * 299.99740 * 5 3 2 36 36 H 1.08996 * 109.46660 * 60.00290 * 5 3 2 37 37 H 1.09002 * 109.47155 * 180.02562 * 5 3 2 38 38 H 1.07999 * 120.00040 * 359.97438 * 7 6 3 39 39 H 1.08004 * 119.99797 * 180.02562 * 8 7 6 40 40 H 1.09004 * 109.46848 * 330.00053 * 10 9 8 41 41 H 1.08996 * 109.46914 * 209.99969 * 10 9 8 42 42 H 1.09002 * 109.88998 * 356.14887 * 12 11 10 43 43 H 1.09003 * 109.88733 * 117.17548 * 12 11 10 44 44 H 1.09005 * 110.70342 * 96.18020 * 13 12 11 45 45 H 1.08997 * 110.70605 * 219.41644 * 13 12 11 46 46 H 0.96697 * 114.00262 * 292.32457 * 15 14 13 47 47 H 0.97001 * 119.99346 * 179.97438 * 19 18 16 48 48 H 1.08996 * 110.37823 * 265.19398 * 24 11 10 49 49 H 1.09002 * 110.37399 * 27.53914 * 24 11 10 50 50 H 1.07995 * 120.00520 * 179.73021 * 25 9 8 51 51 H 1.08000 * 119.99690 * 359.97438 * 26 6 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 1.5301 2.1637 1.2493 5 6 1.5301 2.1637 -1.2493 6 6 3.5471 1.4424 0.0006 7 6 4.2383 2.6395 0.0002 8 6 5.6206 2.6394 0.0013 9 6 6.3118 1.4423 0.0034 10 6 7.8188 1.4422 0.0052 11 7 8.3068 1.4437 1.3908 12 6 8.0356 2.7368 2.0451 13 6 9.3858 3.2922 2.5453 14 6 10.2695 2.0178 2.6452 15 8 10.0355 1.3304 3.8759 16 6 11.7291 2.3585 2.4894 17 1 12.2716 2.0244 1.6174 18 6 12.3722 3.0967 3.4604 19 7 11.7114 3.5039 4.5221 20 14 14.1817 3.5184 3.2677 21 1 14.3150 4.8106 2.5483 22 1 14.8091 3.6314 4.6088 23 1 14.8596 2.4483 2.4927 24 6 9.7619 1.1870 1.4402 25 6 5.6206 0.2452 -0.0014 26 6 4.2382 0.2452 0.0016 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3633 0.5139 0.8899 29 1 -0.3633 0.5138 -0.8900 30 1 1.8933 -0.5139 -0.8899 31 1 1.8933 -0.5138 0.8900 32 1 1.8938 3.1913 1.2494 33 1 0.4401 2.1638 1.2493 34 1 1.8934 1.6499 2.1392 35 1 1.8935 1.6499 -2.1392 36 1 0.4401 2.1637 -1.2492 37 1 1.8938 3.1912 -1.2495 38 1 3.6983 3.5748 -0.0010 39 1 6.1607 3.5747 0.0014 40 1 8.1828 2.3317 -0.5091 41 1 8.1826 0.5517 -0.5072 42 1 7.5923 3.4289 1.3292 43 1 7.3595 2.5915 2.8877 44 1 9.8040 3.9951 1.8248 45 1 9.2711 3.7622 3.5220 46 1 10.3366 1.8116 4.6587 47 1 12.1639 4.0230 5.2053 48 1 9.9549 0.1266 1.6023 49 1 10.2382 1.5239 0.5195 50 1 6.1605 -0.6901 -0.0042 51 1 3.6981 -0.6900 0.0024 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000592153702.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:23:03 Heat of formation + Delta-G solvation = -54.044912 kcal Electronic energy + Delta-G solvation = -26993.198474 eV Core-core repulsion = 23469.768285 eV Total energy + Delta-G solvation = -3523.430189 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 317.210 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -41.05528 -40.00805 -38.03102 -36.37657 -34.11761 -33.04008 -32.06217 -31.12748 -29.98076 -29.78479 -28.11133 -27.19255 -25.84664 -24.98735 -22.99301 -22.55805 -21.40794 -21.36193 -19.64903 -19.09018 -17.46298 -17.02226 -16.92764 -16.49852 -16.06082 -16.00018 -15.66701 -15.55824 -15.10328 -14.62738 -14.51058 -14.38872 -14.27878 -14.15253 -13.90280 -13.62930 -13.26715 -13.12081 -13.05064 -12.84419 -12.81897 -12.72610 -12.63114 -12.52996 -12.31317 -12.25962 -12.08681 -12.03901 -12.01311 -11.65356 -11.45853 -11.32798 -11.13023 -11.11843 -10.61706 -10.08318 -9.72900 -9.42675 -9.12685 -8.23864 -6.39731 0.47604 0.58305 1.39187 1.41551 1.51393 2.36612 2.80666 3.00529 3.35927 3.68335 3.79081 3.89034 3.99131 4.06019 4.10313 4.12575 4.19249 4.27649 4.39078 4.40441 4.49707 4.55454 4.57581 4.62624 4.67741 4.76017 4.80175 4.82433 4.86987 4.89632 5.01470 5.04659 5.06585 5.14213 5.17411 5.20461 5.23059 5.24919 5.29516 5.30975 5.46014 5.50700 5.52249 5.54685 5.65673 5.76625 5.80621 5.81238 5.95982 6.16378 6.21151 6.28026 6.66221 7.32259 7.50479 8.81883 Molecular weight = 317.21amu Principal moments of inertia in cm(-1) A = 0.032682 B = 0.002448 C = 0.002428 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 856.538753 B =11436.813589 C =11530.781477 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.115 4.115 3 C -0.022 4.022 4 C -0.140 4.140 5 C -0.137 4.137 6 C -0.076 4.076 7 C -0.120 4.120 8 C -0.122 4.122 9 C -0.087 4.087 10 C 0.088 3.912 11 N -0.526 5.526 12 C 0.059 3.941 13 C -0.140 4.140 14 C 0.235 3.765 15 O -0.591 6.591 16 C -0.560 4.560 17 H 0.057 0.943 18 C 0.028 3.972 19 N -0.915 5.915 20 Si 0.963 3.037 21 H -0.274 1.274 22 H -0.280 1.280 23 H -0.271 1.271 24 C 0.065 3.935 25 C -0.109 4.109 26 C -0.127 4.127 27 H 0.057 0.943 28 H 0.059 0.941 29 H 0.063 0.937 30 H 0.065 0.935 31 H 0.059 0.941 32 H 0.054 0.946 33 H 0.075 0.925 34 H 0.045 0.955 35 H 0.051 0.949 36 H 0.074 0.926 37 H 0.055 0.945 38 H 0.132 0.868 39 H 0.118 0.882 40 H 0.041 0.959 41 H 0.085 0.915 42 H 0.061 0.939 43 H 0.053 0.947 44 H 0.048 0.952 45 H 0.051 0.949 46 H 0.375 0.625 47 H 0.270 0.730 48 H 0.064 0.936 49 H 0.053 0.947 50 H 0.123 0.877 51 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.182 -2.521 -11.110 24.052 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.153 4.153 3 C -0.022 4.022 4 C -0.197 4.197 5 C -0.194 4.194 6 C -0.076 4.076 7 C -0.138 4.138 8 C -0.140 4.140 9 C -0.087 4.087 10 C -0.040 4.040 11 N -0.250 5.250 12 C -0.068 4.068 13 C -0.179 4.179 14 C 0.194 3.806 15 O -0.400 6.400 16 C -0.599 4.599 17 H 0.076 0.924 18 C -0.173 4.173 19 N -0.555 5.555 20 Si 0.788 3.212 21 H -0.200 1.200 22 H -0.206 1.206 23 H -0.196 1.196 24 C -0.062 4.062 25 C -0.128 4.128 26 C -0.145 4.145 27 H 0.076 0.924 28 H 0.078 0.922 29 H 0.082 0.918 30 H 0.084 0.916 31 H 0.078 0.922 32 H 0.073 0.927 33 H 0.094 0.906 34 H 0.064 0.936 35 H 0.071 0.929 36 H 0.093 0.907 37 H 0.074 0.926 38 H 0.150 0.850 39 H 0.136 0.864 40 H 0.059 0.941 41 H 0.104 0.896 42 H 0.079 0.921 43 H 0.071 0.929 44 H 0.066 0.934 45 H 0.070 0.930 46 H 0.225 0.775 47 H 0.080 0.920 48 H 0.082 0.918 49 H 0.071 0.929 50 H 0.141 0.859 51 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -21.683 -3.273 -11.101 24.578 hybrid contribution 2.112 1.438 0.290 2.572 sum -19.571 -1.835 -10.811 22.434 Atomic orbital electron populations 1.21894 0.94722 1.02026 1.02443 1.21648 0.96802 0.94911 1.01895 1.19516 0.89189 0.96760 0.96704 1.21940 1.01735 0.99883 0.96110 1.21918 1.01699 0.99871 0.95902 1.20055 0.95913 0.92766 0.98844 1.21069 0.93389 0.98462 1.00872 1.21161 0.94885 0.97341 1.00617 1.19753 0.94490 0.93963 1.00493 1.21237 0.91892 1.01500 0.89345 1.63576 1.14468 1.31433 1.15540 1.22667 0.96782 0.89437 0.97930 1.23154 0.95425 0.99473 0.99855 1.19832 0.91682 0.87090 0.81952 1.86094 1.85476 1.50552 1.17900 1.21854 0.96465 1.34619 1.06932 0.92426 1.25743 1.02569 0.94332 0.94621 1.69680 1.37995 1.37631 1.10171 0.85485 0.79627 0.78504 0.77558 1.19974 1.20578 1.19577 1.22871 0.86544 0.99828 0.96954 1.21151 0.94688 0.97530 0.99413 1.21337 0.93556 0.98751 1.00854 0.92431 0.92185 0.91807 0.91642 0.92249 0.92684 0.90595 0.93608 0.92944 0.90699 0.92613 0.84979 0.86417 0.94089 0.89649 0.92123 0.92869 0.93354 0.93010 0.77460 0.92036 0.91759 0.92855 0.85884 0.84306 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.70 9.21 71.98 0.66 -1.03 16 2 C -0.12 -1.63 3.65 30.59 0.11 -1.52 16 3 C -0.02 -0.35 0.63 -52.93 -0.03 -0.38 16 4 C -0.14 -2.17 7.93 71.98 0.57 -1.60 16 5 C -0.14 -1.87 7.94 71.98 0.57 -1.30 16 6 C -0.08 -1.62 4.76 -19.86 -0.09 -1.72 16 7 C -0.12 -2.77 8.71 22.27 0.19 -2.58 16 8 C -0.12 -3.27 8.74 22.27 0.19 -3.07 16 9 C -0.09 -2.52 5.11 -19.87 -0.10 -2.62 16 10 C 0.09 2.81 4.75 85.56 0.41 3.21 16 11 N -0.53 -20.86 5.15 -890.07 -4.58 -25.44 16 12 C 0.06 2.41 6.25 86.65 0.54 2.95 16 13 C -0.14 -6.66 5.65 31.87 0.18 -6.48 16 14 C 0.23 12.05 0.89 -10.06 -0.01 12.04 16 15 O -0.59 -32.75 13.18 -148.98 -1.96 -34.71 16 16 C -0.56 -30.52 8.25 25.60 0.21 -30.31 16 17 H 0.06 3.09 7.77 -2.92 -0.02 3.07 16 18 C 0.03 1.47 5.29 84.66 0.45 1.92 16 19 N -0.91 -49.83 10.78 21.45 0.23 -49.60 16 20 Si 0.96 42.41 29.54 68.60 2.03 44.44 16 21 H -0.27 -11.76 7.11 99.48 0.71 -11.05 16 22 H -0.28 -12.09 7.11 99.48 0.71 -11.38 16 23 H -0.27 -11.78 7.11 99.48 0.71 -11.07 16 24 C 0.07 2.91 5.86 86.78 0.51 3.41 16 25 C -0.11 -2.92 9.70 22.27 0.22 -2.71 16 26 C -0.13 -2.92 8.98 22.27 0.20 -2.72 16 27 H 0.06 0.58 8.14 -2.39 -0.02 0.56 16 28 H 0.06 0.64 6.43 -2.39 -0.02 0.62 16 29 H 0.06 0.62 6.43 -2.39 -0.02 0.61 16 30 H 0.06 0.92 7.52 -2.39 -0.02 0.90 16 31 H 0.06 0.92 7.51 -2.39 -0.02 0.91 16 32 H 0.05 0.87 7.39 -2.39 -0.02 0.85 16 33 H 0.08 0.92 6.43 -2.39 -0.02 0.91 16 34 H 0.04 0.82 8.14 -2.39 -0.02 0.80 16 35 H 0.05 0.75 8.14 -2.39 -0.02 0.74 16 36 H 0.07 0.80 6.43 -2.39 -0.02 0.78 16 37 H 0.05 0.77 7.39 -2.39 -0.02 0.75 16 38 H 0.13 2.54 7.10 -2.91 -0.02 2.52 16 39 H 0.12 3.06 6.91 -2.91 -0.02 3.04 16 40 H 0.04 1.29 7.90 -2.39 -0.02 1.27 16 41 H 0.09 2.53 8.01 -2.39 -0.02 2.51 16 42 H 0.06 2.16 5.50 -2.39 -0.01 2.15 16 43 H 0.05 2.25 8.14 -2.39 -0.02 2.23 16 44 H 0.05 2.30 8.04 -2.38 -0.02 2.28 16 45 H 0.05 2.64 7.84 -2.39 -0.02 2.63 16 46 H 0.38 21.24 6.93 -74.06 -0.51 20.72 16 47 H 0.27 13.96 8.31 -92.71 -0.77 13.19 16 48 H 0.06 2.91 8.14 -2.39 -0.02 2.89 16 49 H 0.05 2.25 7.68 -2.39 -0.02 2.23 16 50 H 0.12 3.11 8.06 -2.91 -0.02 3.09 16 51 H 0.14 2.62 5.90 -2.91 -0.02 2.60 16 Total: -1.00 -59.35 384.45 0.89 -58.46 By element: Atomic # 1 Polarization: 40.96 SS G_CDS: 0.40 Total: 41.36 kcal Atomic # 6 Polarization: -39.28 SS G_CDS: 4.78 Total: -34.50 kcal Atomic # 7 Polarization: -70.69 SS G_CDS: -4.35 Total: -75.04 kcal Atomic # 8 Polarization: -32.75 SS G_CDS: -1.96 Total: -34.71 kcal Atomic # 14 Polarization: 42.41 SS G_CDS: 2.03 Total: 44.44 kcal Total: -59.35 0.89 -58.46 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592153702.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.415 kcal (2) G-P(sol) polarization free energy of solvation -59.348 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.932 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.887 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.460 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.045 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds