Wall clock time and date at job start Tue Mar 31 2020 12:23:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52997 * 109.47305 * 2 1 4 4 C 1.52998 * 109.46938 * 299.99841 * 3 2 1 5 5 C 1.53001 * 109.47000 * 59.99970 * 3 2 1 6 6 C 1.50696 * 109.47139 * 180.02562 * 3 2 1 7 7 C 1.38231 * 120.00280 * 359.72270 * 6 3 2 8 8 C 1.38232 * 120.00318 * 179.81318 * 7 6 3 9 9 C 1.38234 * 119.99873 * 0.42086 * 8 7 6 10 10 C 1.50703 * 120.00208 * 179.79497 * 9 8 7 11 11 N 1.46904 * 109.46730 * 270.01866 * 10 9 8 12 12 C 1.47841 * 110.99970 * 290.84140 * 11 10 9 13 13 C 1.54907 * 104.79600 * 213.63285 * 12 11 10 14 14 C 1.55141 * 101.65043 * 37.07420 * 13 12 11 15 15 O 1.42901 * 110.70800 * 82.72398 * 14 13 12 16 16 C 1.50704 * 110.85512 * 205.89244 * 14 13 12 17 17 H 1.07993 * 119.99837 * 20.81904 * 16 14 13 18 18 C 1.37879 * 119.99769 * 200.81633 * 16 14 13 19 19 N 1.31510 * 119.99954 * 173.62855 * 18 16 14 20 20 Si 1.86802 * 120.00431 * 353.63034 * 18 16 14 21 21 H 1.48506 * 109.47012 * 86.33548 * 20 18 16 22 22 H 1.48490 * 109.47400 * 206.33868 * 20 18 16 23 23 H 1.48501 * 109.46549 * 326.34144 * 20 18 16 24 24 C 1.47441 * 110.99726 * 169.99939 * 11 10 9 25 25 C 1.38234 * 120.00077 * 359.80994 * 9 8 7 26 26 C 1.38237 * 119.99658 * 180.02562 * 6 3 2 27 27 H 1.09000 * 109.47258 * 299.99768 * 1 2 3 28 28 H 1.08997 * 109.47475 * 60.00059 * 1 2 3 29 29 H 1.09010 * 109.47093 * 180.02562 * 1 2 3 30 30 H 1.09008 * 109.46801 * 239.99780 * 2 1 3 31 31 H 1.08998 * 109.46987 * 120.00135 * 2 1 3 32 32 H 1.09002 * 109.46883 * 60.00398 * 4 3 2 33 33 H 1.09002 * 109.47308 * 179.97438 * 4 3 2 34 34 H 1.08999 * 109.47425 * 300.00214 * 4 3 2 35 35 H 1.08998 * 109.47115 * 59.99973 * 5 3 2 36 36 H 1.08993 * 109.46883 * 180.02562 * 5 3 2 37 37 H 1.08999 * 109.47034 * 300.00175 * 5 3 2 38 38 H 1.08005 * 119.99937 * 0.02562 * 7 6 3 39 39 H 1.07999 * 120.00423 * 180.21177 * 8 7 6 40 40 H 1.09003 * 109.47151 * 30.01525 * 10 9 8 41 41 H 1.09000 * 109.47234 * 150.02230 * 10 9 8 42 42 H 1.08996 * 110.37416 * 332.46939 * 12 11 10 43 43 H 1.09003 * 110.37011 * 94.80877 * 12 11 10 44 44 H 1.09000 * 110.99501 * 278.98451 * 13 12 11 45 45 H 1.09000 * 111.02531 * 155.17791 * 13 12 11 46 46 H 0.96705 * 113.99497 * 61.06580 * 15 14 13 47 47 H 0.97003 * 120.00583 * 180.02562 * 19 18 16 48 48 H 1.09009 * 109.88734 * 242.66413 * 24 11 10 49 49 H 1.09001 * 109.89265 * 3.68670 * 24 11 10 50 50 H 1.08001 * 120.00471 * 179.97438 * 25 9 8 51 51 H 1.08001 * 120.00264 * 359.97438 * 26 6 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 1.5301 2.1637 -1.2493 5 6 1.5300 2.1637 1.2493 6 6 3.5470 1.4424 -0.0006 7 6 4.2382 0.2453 0.0047 8 6 5.6205 0.2452 0.0002 9 6 6.3117 1.4424 -0.0008 10 6 7.8187 1.4424 -0.0010 11 7 8.3085 1.4430 1.3840 12 6 8.0222 2.7332 2.0466 13 6 9.2145 2.9563 3.0100 14 6 10.3980 2.3942 2.1792 15 8 10.8777 3.3740 1.2562 16 6 11.5106 1.9240 3.0804 17 1 11.3050 1.6877 4.1139 18 6 12.7911 1.7956 2.5854 19 7 13.7843 1.5072 3.3977 20 14 13.1152 2.0313 0.7609 21 1 13.3340 3.4729 0.4792 22 1 14.3230 1.2615 0.3691 23 1 11.9459 1.5470 -0.0161 24 6 9.7627 1.2040 1.4302 25 6 5.6206 2.6395 -0.0013 26 6 4.2381 2.6396 -0.0002 27 1 -0.3634 0.5138 0.8900 28 1 -0.3634 0.5138 -0.8899 29 1 -0.3634 -1.0278 0.0005 30 1 1.8933 -0.5139 -0.8900 31 1 1.8933 -0.5138 0.8900 32 1 0.4401 2.1637 -1.2492 33 1 1.8930 3.1915 -1.2491 34 1 1.8934 1.6498 -2.1392 35 1 1.8933 1.6499 2.1392 36 1 1.8930 3.1914 1.2490 37 1 0.4400 2.1637 1.2492 38 1 3.6982 -0.6900 0.0089 39 1 6.1605 -0.6900 0.0009 40 1 8.1820 0.5521 -0.5145 41 1 8.1820 2.3322 -0.5152 42 1 7.9739 3.5354 1.3103 43 1 7.0885 2.6735 2.6059 44 1 9.0821 2.3912 3.9327 45 1 9.3540 4.0166 3.2206 46 1 11.2123 4.1787 1.6754 47 1 14.6852 1.4172 3.0496 48 1 9.9692 0.2766 1.9646 49 1 10.1612 1.1447 0.4174 50 1 6.1605 3.5749 -0.0017 51 1 3.6982 3.5749 0.0002 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000592153704.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:23:07 Heat of formation + Delta-G solvation = -34.136998 kcal Electronic energy + Delta-G solvation = -27142.723825 eV Core-core repulsion = 23620.156908 eV Total energy + Delta-G solvation = -3522.566917 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 317.210 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -40.14014 -38.78147 -37.15253 -35.06620 -32.33646 -32.05091 -31.15826 -30.26005 -28.95467 -28.26754 -27.51493 -25.83116 -24.40878 -23.82375 -22.07017 -21.53854 -20.29587 -19.64165 -18.91594 -17.33824 -16.67156 -15.58204 -15.52084 -15.21756 -14.98884 -14.98633 -14.52155 -14.29305 -13.93175 -13.77378 -13.62917 -13.55144 -13.36852 -12.78782 -12.54005 -12.43288 -12.26818 -12.21752 -12.00016 -11.96298 -11.76987 -11.64151 -11.42767 -11.32920 -11.07664 -10.90277 -10.80679 -10.66754 -10.57385 -10.43830 -10.38973 -10.14679 -10.10699 -9.15443 -8.80103 -8.59283 -8.55345 -8.36432 -7.71849 -6.15115 -4.24795 1.42956 1.52190 3.45222 3.51536 3.66569 3.79884 4.40145 4.46758 4.50683 4.66221 4.71937 4.97094 5.00700 5.06652 5.09873 5.10278 5.14055 5.19488 5.23279 5.31850 5.43166 5.43859 5.52909 5.59198 5.64193 5.66371 5.70118 5.75333 5.75826 5.82177 5.87294 5.89848 5.94029 6.01081 6.10596 6.13512 6.16558 6.17619 6.21499 6.27916 6.54795 6.61903 6.67304 6.72760 6.81046 6.87105 7.10828 7.20176 7.44005 7.63680 7.64816 8.19074 8.71483 8.88850 9.47703 10.94449 Molecular weight = 317.21amu Principal moments of inertia in cm(-1) A = 0.031975 B = 0.002620 C = 0.002603 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 875.474149 B =10684.094030 C =10753.045680 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.116 4.116 3 C -0.023 4.023 4 C -0.139 4.139 5 C -0.140 4.140 6 C -0.078 4.078 7 C -0.123 4.123 8 C -0.098 4.098 9 C -0.068 4.068 10 C 0.086 3.914 11 N -0.525 5.525 12 C 0.049 3.951 13 C -0.143 4.143 14 C 0.206 3.794 15 O -0.570 6.570 16 C -0.548 4.548 17 H 0.079 0.921 18 C 0.073 3.927 19 N -0.891 5.891 20 Si 0.941 3.059 21 H -0.291 1.291 22 H -0.323 1.323 23 H -0.269 1.269 24 C 0.051 3.949 25 C -0.110 4.110 26 C -0.117 4.117 27 H 0.057 0.943 28 H 0.056 0.944 29 H 0.052 0.948 30 H 0.064 0.936 31 H 0.066 0.934 32 H 0.059 0.941 33 H 0.055 0.945 34 H 0.055 0.945 35 H 0.056 0.944 36 H 0.055 0.945 37 H 0.059 0.941 38 H 0.122 0.878 39 H 0.121 0.879 40 H 0.076 0.924 41 H 0.042 0.958 42 H 0.038 0.962 43 H 0.065 0.935 44 H 0.075 0.925 45 H 0.062 0.938 46 H 0.369 0.631 47 H 0.265 0.735 48 H 0.091 0.909 49 H 0.054 0.946 50 H 0.116 0.884 51 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.782 0.728 -8.407 26.180 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.153 4.153 3 C -0.023 4.023 4 C -0.196 4.196 5 C -0.197 4.197 6 C -0.079 4.079 7 C -0.141 4.141 8 C -0.117 4.117 9 C -0.069 4.069 10 C -0.042 4.042 11 N -0.249 5.249 12 C -0.079 4.079 13 C -0.181 4.181 14 C 0.166 3.834 15 O -0.378 6.378 16 C -0.585 4.585 17 H 0.097 0.903 18 C -0.131 4.131 19 N -0.527 5.527 20 Si 0.775 3.225 21 H -0.218 1.218 22 H -0.254 1.254 23 H -0.195 1.195 24 C -0.076 4.076 25 C -0.129 4.129 26 C -0.135 4.135 27 H 0.076 0.924 28 H 0.075 0.925 29 H 0.071 0.929 30 H 0.083 0.917 31 H 0.084 0.916 32 H 0.078 0.922 33 H 0.074 0.926 34 H 0.074 0.926 35 H 0.076 0.924 36 H 0.075 0.925 37 H 0.078 0.922 38 H 0.140 0.860 39 H 0.139 0.861 40 H 0.094 0.906 41 H 0.060 0.940 42 H 0.057 0.943 43 H 0.083 0.917 44 H 0.094 0.906 45 H 0.081 0.919 46 H 0.217 0.783 47 H 0.075 0.925 48 H 0.109 0.891 49 H 0.072 0.928 50 H 0.134 0.866 51 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges -25.032 -0.176 -8.542 26.450 hybrid contribution 0.986 1.171 -0.833 1.743 sum -24.045 0.995 -9.375 25.828 Atomic orbital electron populations 1.21914 0.95925 1.01501 1.02016 1.21662 0.95751 0.95682 1.02195 1.19464 0.90949 0.95865 0.96008 1.21934 1.00751 1.00169 0.96790 1.21936 1.00707 1.00215 0.96844 1.19711 0.94370 0.93247 1.00537 1.21097 0.94026 0.97614 1.01388 1.21016 0.93818 0.97744 0.99119 1.19851 0.95428 0.93073 0.98507 1.21237 0.90478 1.01286 0.91175 1.63741 1.15732 1.31747 1.13640 1.22974 0.98589 0.89763 0.96562 1.23250 0.95484 1.00486 0.98901 1.20372 0.91735 0.85156 0.86130 1.86131 1.82315 1.30284 1.39065 1.21272 0.91721 1.47498 0.98044 0.90327 1.25121 0.95801 0.93080 0.99140 1.69971 1.00181 1.46844 1.35685 0.85882 0.75248 0.77105 0.84220 1.21844 1.25434 1.19529 1.23357 0.84039 0.99792 1.00426 1.21039 0.93999 0.97635 1.00212 1.20851 0.93866 0.97331 1.01442 0.92416 0.92481 0.92934 0.91697 0.91573 0.92224 0.92572 0.92603 0.92445 0.92549 0.92236 0.86035 0.86143 0.90560 0.94001 0.94331 0.91704 0.90609 0.91932 0.78296 0.92550 0.89097 0.92799 0.86564 0.86654 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.00 9.21 37.16 0.34 -0.66 16 2 C -0.12 -0.89 3.65 -26.73 -0.10 -0.98 16 3 C -0.02 -0.19 0.63 -155.66 -0.10 -0.29 16 4 C -0.14 -1.07 7.93 37.16 0.29 -0.77 16 5 C -0.14 -1.13 7.93 37.16 0.29 -0.84 16 6 C -0.08 -0.86 4.76 -104.63 -0.50 -1.35 16 7 C -0.12 -1.42 8.98 -39.59 -0.36 -1.78 16 8 C -0.10 -1.30 9.70 -39.59 -0.38 -1.68 16 9 C -0.07 -0.97 5.09 -104.62 -0.53 -1.51 16 10 C 0.09 1.40 4.72 -4.97 -0.02 1.38 16 11 N -0.52 -9.75 5.15 -232.68 -1.20 -10.95 16 12 C 0.05 0.86 5.60 -2.30 -0.01 0.85 16 13 C -0.14 -2.80 6.23 -24.59 -0.15 -2.96 16 14 C 0.21 4.68 0.68 -89.95 -0.06 4.62 16 15 O -0.57 -12.63 8.88 -35.23 -0.31 -12.95 16 16 C -0.55 -14.86 8.71 -34.44 -0.30 -15.16 16 17 H 0.08 2.33 7.99 -52.49 -0.42 1.91 16 18 C 0.07 2.06 5.46 -17.82 -0.10 1.96 16 19 N -0.89 -26.82 13.96 55.43 0.77 -26.05 16 20 Si 0.94 23.64 24.90 -169.99 -4.23 19.41 16 21 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16 22 H -0.32 -8.32 7.11 56.52 0.40 -7.91 16 23 H -0.27 -6.66 5.18 56.52 0.29 -6.37 16 24 C 0.05 1.10 5.63 -2.84 -0.02 1.08 16 25 C -0.11 -1.45 8.93 -39.58 -0.35 -1.80 16 26 C -0.12 -1.35 8.71 -39.58 -0.34 -1.69 16 27 H 0.06 0.36 6.43 -51.93 -0.33 0.02 16 28 H 0.06 0.34 6.43 -51.93 -0.33 0.01 16 29 H 0.05 0.31 8.14 -51.92 -0.42 -0.11 16 30 H 0.06 0.50 7.53 -51.92 -0.39 0.11 16 31 H 0.07 0.53 7.50 -51.93 -0.39 0.15 16 32 H 0.06 0.39 6.43 -51.93 -0.33 0.05 16 33 H 0.06 0.43 7.39 -51.93 -0.38 0.05 16 34 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 35 H 0.06 0.51 8.14 -51.93 -0.42 0.08 16 36 H 0.06 0.46 7.39 -51.93 -0.38 0.07 16 37 H 0.06 0.40 6.43 -51.93 -0.33 0.07 16 38 H 0.12 1.18 5.90 -52.48 -0.31 0.87 16 39 H 0.12 1.50 8.06 -52.49 -0.42 1.08 16 40 H 0.08 1.20 7.97 -51.93 -0.41 0.78 16 41 H 0.04 0.70 7.79 -51.93 -0.40 0.30 16 42 H 0.04 0.66 6.99 -51.93 -0.36 0.30 16 43 H 0.06 1.09 8.14 -51.93 -0.42 0.66 16 44 H 0.08 1.54 7.99 -51.93 -0.42 1.13 16 45 H 0.06 1.13 8.14 -51.93 -0.42 0.71 16 46 H 0.37 7.28 9.07 45.56 0.41 7.69 16 47 H 0.27 7.55 8.31 -40.82 -0.34 7.21 16 48 H 0.09 2.06 7.82 -51.92 -0.41 1.66 16 49 H 0.05 1.20 5.70 -51.93 -0.30 0.91 16 50 H 0.12 1.48 7.49 -52.49 -0.39 1.09 16 51 H 0.12 1.14 7.10 -52.49 -0.37 0.76 16 LS Contribution 379.25 15.07 5.72 5.72 Total: -1.00 -30.21 379.25 -9.70 -39.91 By element: Atomic # 1 Polarization: 14.55 SS G_CDS: -8.04 Total: 6.50 kcal Atomic # 6 Polarization: -19.20 SS G_CDS: -2.40 Total: -21.59 kcal Atomic # 7 Polarization: -36.57 SS G_CDS: -0.43 Total: -36.99 kcal Atomic # 8 Polarization: -12.63 SS G_CDS: -0.31 Total: -12.95 kcal Atomic # 14 Polarization: 23.64 SS G_CDS: -4.23 Total: 19.41 kcal Total LS contribution 5.72 Total: 5.72 kcal Total: -30.21 -9.70 -39.91 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592153704.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.771 kcal (2) G-P(sol) polarization free energy of solvation -30.213 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.441 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.696 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.908 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.137 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds