Wall clock time and date at job start Tue Mar 31 2020 12:23:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52997 * 109.47305 * 2 1 4 4 C 1.52998 * 109.46938 * 299.99841 * 3 2 1 5 5 C 1.53001 * 109.47000 * 59.99970 * 3 2 1 6 6 C 1.50696 * 109.47139 * 180.02562 * 3 2 1 7 7 C 1.38231 * 120.00280 * 359.72270 * 6 3 2 8 8 C 1.38232 * 120.00318 * 179.81318 * 7 6 3 9 9 C 1.38234 * 119.99873 * 0.42086 * 8 7 6 10 10 C 1.50703 * 120.00208 * 179.79497 * 9 8 7 11 11 N 1.46904 * 109.46730 * 270.01866 * 10 9 8 12 12 C 1.47841 * 110.99970 * 290.84140 * 11 10 9 13 13 C 1.54907 * 104.79600 * 213.63285 * 12 11 10 14 14 C 1.55141 * 101.65043 * 37.07420 * 13 12 11 15 15 O 1.42901 * 110.70800 * 82.72398 * 14 13 12 16 16 C 1.50704 * 110.85512 * 205.89244 * 14 13 12 17 17 H 1.07993 * 119.99837 * 20.81904 * 16 14 13 18 18 C 1.37879 * 119.99769 * 200.81633 * 16 14 13 19 19 N 1.31510 * 119.99954 * 173.62855 * 18 16 14 20 20 Si 1.86802 * 120.00431 * 353.63034 * 18 16 14 21 21 H 1.48506 * 109.47012 * 86.33548 * 20 18 16 22 22 H 1.48490 * 109.47400 * 206.33868 * 20 18 16 23 23 H 1.48501 * 109.46549 * 326.34144 * 20 18 16 24 24 C 1.47441 * 110.99726 * 169.99939 * 11 10 9 25 25 C 1.38234 * 120.00077 * 359.80994 * 9 8 7 26 26 C 1.38237 * 119.99658 * 180.02562 * 6 3 2 27 27 H 1.09000 * 109.47258 * 299.99768 * 1 2 3 28 28 H 1.08997 * 109.47475 * 60.00059 * 1 2 3 29 29 H 1.09010 * 109.47093 * 180.02562 * 1 2 3 30 30 H 1.09008 * 109.46801 * 239.99780 * 2 1 3 31 31 H 1.08998 * 109.46987 * 120.00135 * 2 1 3 32 32 H 1.09002 * 109.46883 * 60.00398 * 4 3 2 33 33 H 1.09002 * 109.47308 * 179.97438 * 4 3 2 34 34 H 1.08999 * 109.47425 * 300.00214 * 4 3 2 35 35 H 1.08998 * 109.47115 * 59.99973 * 5 3 2 36 36 H 1.08993 * 109.46883 * 180.02562 * 5 3 2 37 37 H 1.08999 * 109.47034 * 300.00175 * 5 3 2 38 38 H 1.08005 * 119.99937 * 0.02562 * 7 6 3 39 39 H 1.07999 * 120.00423 * 180.21177 * 8 7 6 40 40 H 1.09003 * 109.47151 * 30.01525 * 10 9 8 41 41 H 1.09000 * 109.47234 * 150.02230 * 10 9 8 42 42 H 1.08996 * 110.37416 * 332.46939 * 12 11 10 43 43 H 1.09003 * 110.37011 * 94.80877 * 12 11 10 44 44 H 1.09000 * 110.99501 * 278.98451 * 13 12 11 45 45 H 1.09000 * 111.02531 * 155.17791 * 13 12 11 46 46 H 0.96705 * 113.99497 * 61.06580 * 15 14 13 47 47 H 0.97003 * 120.00583 * 180.02562 * 19 18 16 48 48 H 1.09009 * 109.88734 * 242.66413 * 24 11 10 49 49 H 1.09001 * 109.89265 * 3.68670 * 24 11 10 50 50 H 1.08001 * 120.00471 * 179.97438 * 25 9 8 51 51 H 1.08001 * 120.00264 * 359.97438 * 26 6 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 1.5301 2.1637 -1.2493 5 6 1.5300 2.1637 1.2493 6 6 3.5470 1.4424 -0.0006 7 6 4.2382 0.2453 0.0047 8 6 5.6205 0.2452 0.0002 9 6 6.3117 1.4424 -0.0008 10 6 7.8187 1.4424 -0.0010 11 7 8.3085 1.4430 1.3840 12 6 8.0222 2.7332 2.0466 13 6 9.2145 2.9563 3.0100 14 6 10.3980 2.3942 2.1792 15 8 10.8777 3.3740 1.2562 16 6 11.5106 1.9240 3.0804 17 1 11.3050 1.6877 4.1139 18 6 12.7911 1.7956 2.5854 19 7 13.7843 1.5072 3.3977 20 14 13.1152 2.0313 0.7609 21 1 13.3340 3.4729 0.4792 22 1 14.3230 1.2615 0.3691 23 1 11.9459 1.5470 -0.0161 24 6 9.7627 1.2040 1.4302 25 6 5.6206 2.6395 -0.0013 26 6 4.2381 2.6396 -0.0002 27 1 -0.3634 0.5138 0.8900 28 1 -0.3634 0.5138 -0.8899 29 1 -0.3634 -1.0278 0.0005 30 1 1.8933 -0.5139 -0.8900 31 1 1.8933 -0.5138 0.8900 32 1 0.4401 2.1637 -1.2492 33 1 1.8930 3.1915 -1.2491 34 1 1.8934 1.6498 -2.1392 35 1 1.8933 1.6499 2.1392 36 1 1.8930 3.1914 1.2490 37 1 0.4400 2.1637 1.2492 38 1 3.6982 -0.6900 0.0089 39 1 6.1605 -0.6900 0.0009 40 1 8.1820 0.5521 -0.5145 41 1 8.1820 2.3322 -0.5152 42 1 7.9739 3.5354 1.3103 43 1 7.0885 2.6735 2.6059 44 1 9.0821 2.3912 3.9327 45 1 9.3540 4.0166 3.2206 46 1 11.2123 4.1787 1.6754 47 1 14.6852 1.4172 3.0496 48 1 9.9692 0.2766 1.9646 49 1 10.1612 1.1447 0.4174 50 1 6.1605 3.5749 -0.0017 51 1 3.6982 3.5749 0.0002 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000592153704.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:23:06 Heat of formation + Delta-G solvation = -52.802029 kcal Electronic energy + Delta-G solvation = -27143.533201 eV Core-core repulsion = 23620.156908 eV Total energy + Delta-G solvation = -3523.376293 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 317.210 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.09146 -40.24971 -38.12250 -36.59207 -34.46399 -33.21750 -32.09220 -31.24425 -30.07186 -29.97569 -28.10799 -27.15299 -25.77962 -25.00033 -22.99102 -22.61422 -21.66309 -21.44671 -19.64175 -19.33214 -17.63347 -17.15535 -17.03418 -16.59257 -16.26988 -15.90914 -15.56739 -15.45170 -15.30065 -14.94942 -14.69037 -14.47808 -14.35079 -14.26162 -14.05151 -13.74412 -13.55344 -13.42695 -13.11274 -12.85819 -12.80407 -12.68704 -12.55558 -12.49112 -12.27224 -12.14680 -12.10741 -12.01544 -11.95727 -11.82660 -11.46156 -11.31856 -11.20329 -11.12283 -10.64328 -10.36988 -9.73746 -9.46046 -9.18150 -8.36103 -6.47585 0.46558 0.58068 1.43587 1.46263 1.65463 2.40129 2.78242 2.97390 3.29097 3.49765 3.68299 3.78970 3.86358 4.03988 4.09365 4.10444 4.18619 4.24854 4.36680 4.40143 4.46081 4.51199 4.55370 4.57923 4.63147 4.68419 4.72602 4.80083 4.82948 4.87325 4.98704 5.01588 5.06926 5.07756 5.14058 5.17191 5.20258 5.22947 5.25763 5.28857 5.30609 5.38161 5.50796 5.54664 5.56988 5.65514 5.79034 5.81155 5.99959 6.07153 6.16017 6.20626 6.59732 6.97568 7.30310 8.77490 Molecular weight = 317.21amu Principal moments of inertia in cm(-1) A = 0.031975 B = 0.002620 C = 0.002603 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 875.474149 B =10684.094030 C =10753.045680 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.116 4.116 3 C -0.022 4.022 4 C -0.138 4.138 5 C -0.139 4.139 6 C -0.075 4.075 7 C -0.127 4.127 8 C -0.110 4.110 9 C -0.086 4.086 10 C 0.090 3.910 11 N -0.528 5.528 12 C 0.060 3.940 13 C -0.138 4.138 14 C 0.203 3.797 15 O -0.570 6.570 16 C -0.545 4.545 17 H 0.041 0.959 18 C 0.025 3.975 19 N -0.938 5.938 20 Si 0.999 3.001 21 H -0.279 1.279 22 H -0.332 1.332 23 H -0.263 1.263 24 C 0.058 3.942 25 C -0.117 4.117 26 C -0.118 4.118 27 H 0.060 0.940 28 H 0.062 0.938 29 H 0.056 0.944 30 H 0.063 0.937 31 H 0.060 0.940 32 H 0.073 0.927 33 H 0.056 0.944 34 H 0.050 0.950 35 H 0.047 0.953 36 H 0.056 0.944 37 H 0.074 0.926 38 H 0.138 0.862 39 H 0.121 0.879 40 H 0.076 0.924 41 H 0.037 0.963 42 H 0.050 0.950 43 H 0.078 0.922 44 H 0.062 0.938 45 H 0.080 0.920 46 H 0.381 0.619 47 H 0.266 0.734 48 H 0.071 0.929 49 H 0.047 0.953 50 H 0.119 0.881 51 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.739 1.751 -9.948 29.520 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.153 4.153 3 C -0.022 4.022 4 C -0.195 4.195 5 C -0.196 4.196 6 C -0.075 4.075 7 C -0.144 4.144 8 C -0.128 4.128 9 C -0.087 4.087 10 C -0.037 4.037 11 N -0.252 5.252 12 C -0.067 4.067 13 C -0.177 4.177 14 C 0.163 3.837 15 O -0.379 6.379 16 C -0.583 4.583 17 H 0.059 0.941 18 C -0.175 4.175 19 N -0.576 5.576 20 Si 0.832 3.168 21 H -0.206 1.206 22 H -0.264 1.264 23 H -0.188 1.188 24 C -0.070 4.070 25 C -0.136 4.136 26 C -0.136 4.136 27 H 0.079 0.921 28 H 0.081 0.919 29 H 0.075 0.925 30 H 0.082 0.918 31 H 0.079 0.921 32 H 0.092 0.908 33 H 0.075 0.925 34 H 0.069 0.931 35 H 0.066 0.934 36 H 0.075 0.925 37 H 0.093 0.907 38 H 0.155 0.845 39 H 0.139 0.861 40 H 0.094 0.906 41 H 0.056 0.944 42 H 0.069 0.931 43 H 0.097 0.903 44 H 0.081 0.919 45 H 0.099 0.901 46 H 0.230 0.770 47 H 0.075 0.925 48 H 0.089 0.911 49 H 0.065 0.935 50 H 0.137 0.863 51 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -28.016 0.866 -10.082 29.787 hybrid contribution 1.806 0.833 -0.283 2.009 sum -26.209 1.700 -10.365 28.236 Atomic orbital electron populations 1.21896 0.94780 1.01991 1.02452 1.21654 0.96762 0.95017 1.01867 1.19512 0.89243 0.96671 0.96742 1.21924 1.01694 0.99923 0.95934 1.21933 1.01697 0.99940 0.96033 1.20053 0.95866 0.92800 0.98788 1.21316 0.93489 0.98765 1.00875 1.21132 0.94687 0.97505 0.99499 1.19710 0.94124 0.94061 1.00782 1.21211 0.92018 1.01054 0.89462 1.63714 1.13329 1.32554 1.15569 1.22922 0.98006 0.89594 0.96209 1.23168 0.94939 1.01208 0.98342 1.20270 0.91212 0.85937 0.86289 1.86084 1.82341 1.30636 1.38830 1.21520 0.93165 1.46442 0.97152 0.94096 1.25849 0.95709 0.93136 1.02786 1.70086 1.00746 1.49224 1.37532 0.84921 0.74743 0.77407 0.79692 1.20581 1.26418 1.18839 1.23064 0.86160 0.98449 0.99310 1.21130 0.94783 0.97271 1.00398 1.21075 0.93370 0.98417 1.00759 0.92089 0.91882 0.92517 0.91822 0.92140 0.90770 0.92496 0.93100 0.93428 0.92508 0.90727 0.84450 0.86129 0.90593 0.94431 0.93140 0.90344 0.91893 0.90124 0.76984 0.92485 0.91107 0.93510 0.86269 0.84820 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.55 9.21 71.98 0.66 -0.89 16 2 C -0.12 -1.50 3.65 30.59 0.11 -1.39 16 3 C -0.02 -0.31 0.63 -52.93 -0.03 -0.35 16 4 C -0.14 -1.72 7.93 71.98 0.57 -1.15 16 5 C -0.14 -1.87 7.93 71.98 0.57 -1.30 16 6 C -0.07 -1.46 4.76 -19.87 -0.09 -1.56 16 7 C -0.13 -2.70 8.98 22.27 0.20 -2.50 16 8 C -0.11 -2.76 9.70 22.27 0.22 -2.55 16 9 C -0.09 -2.35 5.09 -19.87 -0.10 -2.45 16 10 C 0.09 2.83 4.72 85.56 0.40 3.23 16 11 N -0.53 -19.09 5.15 -890.08 -4.59 -23.67 16 12 C 0.06 2.00 5.60 86.77 0.49 2.48 16 13 C -0.14 -5.27 6.23 31.98 0.20 -5.07 16 14 C 0.20 9.13 0.68 -10.36 -0.01 9.12 16 15 O -0.57 -24.21 8.88 -148.98 -1.32 -25.53 16 16 C -0.54 -30.17 8.71 25.60 0.22 -29.95 16 17 H 0.04 2.53 7.99 -2.91 -0.02 2.50 16 18 C 0.02 1.42 5.46 84.66 0.46 1.88 16 19 N -0.94 -57.95 13.96 21.45 0.30 -57.65 16 20 Si 1.00 48.90 24.90 68.60 1.71 50.60 16 21 H -0.28 -13.03 7.11 99.48 0.71 -12.32 16 22 H -0.33 -16.67 7.11 99.48 0.71 -15.96 16 23 H -0.26 -12.48 5.18 99.48 0.52 -11.96 16 24 C 0.06 2.49 5.63 86.65 0.49 2.98 16 25 C -0.12 -2.85 8.93 22.27 0.20 -2.65 16 26 C -0.12 -2.44 8.71 22.27 0.19 -2.25 16 27 H 0.06 0.58 6.43 -2.39 -0.02 0.56 16 28 H 0.06 0.57 6.43 -2.39 -0.02 0.55 16 29 H 0.06 0.53 8.14 -2.38 -0.02 0.51 16 30 H 0.06 0.84 7.53 -2.38 -0.02 0.82 16 31 H 0.06 0.85 7.50 -2.39 -0.02 0.84 16 32 H 0.07 0.72 6.43 -2.39 -0.02 0.70 16 33 H 0.06 0.71 7.39 -2.39 -0.02 0.69 16 34 H 0.05 0.69 8.14 -2.39 -0.02 0.67 16 35 H 0.05 0.74 8.14 -2.39 -0.02 0.72 16 36 H 0.06 0.76 7.39 -2.39 -0.02 0.74 16 37 H 0.07 0.78 6.43 -2.39 -0.02 0.77 16 38 H 0.14 2.42 5.90 -2.91 -0.02 2.40 16 39 H 0.12 2.93 8.06 -2.91 -0.02 2.91 16 40 H 0.08 2.34 7.97 -2.39 -0.02 2.32 16 41 H 0.04 1.21 7.79 -2.39 -0.02 1.19 16 42 H 0.05 1.58 6.99 -2.39 -0.02 1.57 16 43 H 0.08 2.44 8.14 -2.39 -0.02 2.42 16 44 H 0.06 2.55 7.99 -2.39 -0.02 2.53 16 45 H 0.08 2.76 8.14 -2.39 -0.02 2.74 16 46 H 0.38 14.20 9.07 -74.05 -0.67 13.53 16 47 H 0.27 15.55 8.31 -92.71 -0.77 14.78 16 48 H 0.07 3.29 7.82 -2.38 -0.02 3.27 16 49 H 0.05 2.06 5.70 -2.39 -0.01 2.04 16 50 H 0.12 2.77 7.49 -2.91 -0.02 2.75 16 51 H 0.13 2.23 7.10 -2.91 -0.02 2.21 16 Total: -1.00 -65.01 379.25 0.90 -64.12 By element: Atomic # 1 Polarization: 26.44 SS G_CDS: 0.05 Total: 26.49 kcal Atomic # 6 Polarization: -39.11 SS G_CDS: 4.75 Total: -34.36 kcal Atomic # 7 Polarization: -77.03 SS G_CDS: -4.29 Total: -81.32 kcal Atomic # 8 Polarization: -24.21 SS G_CDS: -1.32 Total: -25.53 kcal Atomic # 14 Polarization: 48.90 SS G_CDS: 1.71 Total: 50.60 kcal Total: -65.01 0.90 -64.12 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592153704.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.313 kcal (2) G-P(sol) polarization free energy of solvation -65.011 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.697 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.895 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.115 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.802 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds