Wall clock time and date at job start Tue Mar 31 2020 12:04:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.53000 * 109.46841 * 2 1 4 4 C 1.50696 * 109.46730 * 179.97438 * 3 2 1 5 5 C 1.38238 * 119.99767 * 90.00546 * 4 3 2 6 6 C 1.38235 * 120.00108 * 179.97438 * 5 4 3 7 7 C 1.38243 * 119.99617 * 0.02562 * 6 5 4 8 8 C 1.50706 * 119.99586 * 179.97438 * 7 6 5 9 9 C 1.53000 * 109.47116 * 89.99867 * 8 7 6 10 10 C 1.52996 * 109.47210 * 179.97438 * 9 8 7 11 11 C 1.50703 * 109.47094 * 179.97438 * 10 9 8 12 12 O 1.21281 * 119.99990 * 0.02562 * 11 10 9 13 13 N 1.34780 * 119.99575 * 180.02562 * 11 10 9 14 14 C 1.46505 * 119.99588 * 180.02562 * 13 11 10 15 15 C 1.52996 * 109.47111 * 180.02562 * 14 13 11 16 16 C 1.53000 * 109.47213 * 179.97438 * 15 14 13 17 17 C 1.50696 * 109.47110 * 179.97438 * 16 15 14 18 18 H 1.07997 * 120.00016 * 0.02562 * 17 16 15 19 19 C 1.37877 * 119.99838 * 180.02562 * 17 16 15 20 20 N 1.31514 * 120.00031 * 180.02562 * 19 17 16 21 21 Si 1.86802 * 120.00185 * 359.97438 * 19 17 16 22 22 H 1.48493 * 109.46834 * 90.00126 * 21 19 17 23 23 H 1.48498 * 109.47145 * 210.00267 * 21 19 17 24 24 H 1.48503 * 109.46880 * 330.00167 * 21 19 17 25 25 C 1.38233 * 120.00248 * 0.25361 * 7 6 5 26 26 C 1.38234 * 120.00185 * 270.01952 * 4 3 2 27 27 H 1.09000 * 109.46823 * 60.00646 * 1 2 3 28 28 H 1.08999 * 109.46740 * 179.97438 * 1 2 3 29 29 H 1.08991 * 109.47490 * 300.00044 * 1 2 3 30 30 H 1.09004 * 109.47260 * 239.99759 * 2 1 3 31 31 H 1.09005 * 109.46739 * 119.99839 * 2 1 3 32 32 H 1.09000 * 109.46955 * 60.00000 * 3 2 1 33 33 H 1.09000 * 109.46884 * 299.99316 * 3 2 1 34 34 H 1.08000 * 120.00559 * 359.97438 * 5 4 3 35 35 H 1.07999 * 120.00165 * 179.97438 * 6 5 4 36 36 H 1.09000 * 109.46646 * 209.99280 * 8 7 6 37 37 H 1.09000 * 109.47248 * 329.99998 * 8 7 6 38 38 H 1.09000 * 109.47214 * 300.00167 * 9 8 7 39 39 H 1.09008 * 109.47142 * 59.99333 * 9 8 7 40 40 H 1.08997 * 109.47037 * 300.00424 * 10 9 8 41 41 H 1.09000 * 109.46839 * 60.00324 * 10 9 8 42 42 H 0.96992 * 120.00688 * 0.02562 * 13 11 10 43 43 H 1.09008 * 109.47050 * 300.00154 * 14 13 11 44 44 H 1.09003 * 109.46830 * 59.99827 * 14 13 11 45 45 H 1.09005 * 109.46552 * 299.99865 * 15 14 13 46 46 H 1.08991 * 109.47305 * 59.99754 * 15 14 13 47 47 H 1.09000 * 109.47214 * 300.00214 * 16 15 14 48 48 H 1.09000 * 109.46955 * 59.99998 * 16 15 14 49 49 H 0.97000 * 120.00433 * 179.97438 * 20 19 17 50 50 H 1.08004 * 119.99934 * 179.72684 * 25 7 6 51 51 H 1.07999 * 119.99990 * 0.02562 * 26 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5470 1.4425 0.0006 5 6 4.2386 1.4424 -1.1963 6 6 5.6209 1.4429 -1.1958 7 6 6.3116 1.4430 0.0017 8 6 7.8187 1.4429 0.0023 9 6 8.3287 2.8854 0.0023 10 6 9.8587 2.8854 0.0035 11 6 10.3610 4.3063 0.0030 12 8 9.5729 5.2281 0.0022 13 7 11.6862 4.5525 0.0033 14 6 12.1745 5.9337 0.0033 15 6 13.7045 5.9337 0.0031 16 6 14.2145 7.3762 0.0025 17 6 15.7215 7.3762 0.0029 18 1 16.2614 6.4409 0.0031 19 6 16.4108 8.5702 0.0030 20 7 17.7260 8.5702 0.0028 21 14 15.4769 10.1880 0.0019 22 1 15.2285 10.6170 1.4016 23 1 16.2799 11.2227 -0.6980 24 1 14.1797 10.0102 -0.6990 25 6 5.6200 1.4372 1.1986 26 6 4.2377 1.4422 1.1980 27 1 -0.3633 0.5137 -0.8901 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3634 0.5138 0.8899 30 1 1.8934 -0.5139 -0.8900 31 1 1.8933 -0.5138 0.8901 32 1 1.6766 1.9563 0.8900 33 1 1.6767 1.9563 -0.8901 34 1 3.6990 1.4420 -2.1318 35 1 6.1613 1.4424 -2.1309 36 1 8.1816 0.9292 0.8925 37 1 8.1824 0.9291 -0.8875 38 1 7.9657 3.3992 -0.8878 39 1 7.9650 3.3994 0.8922 40 1 10.2213 2.3717 0.8939 41 1 10.2227 2.3714 -0.8861 42 1 12.3165 3.8153 0.0035 43 1 11.8114 6.4475 -0.8869 44 1 11.8109 6.4476 0.8932 45 1 14.0679 5.4198 0.8931 46 1 14.0677 5.4199 -0.8869 47 1 13.8510 7.8897 -0.8876 48 1 13.8513 7.8903 0.8923 49 1 18.2110 9.4102 0.0025 50 1 6.1597 1.4328 2.1341 51 1 3.6973 1.4417 2.1331 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000592591152.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:04:57 Heat of formation + Delta-G solvation = -85.856449 kcal Electronic energy + Delta-G solvation = -24262.013987 eV Core-core repulsion = 20737.204347 eV Total energy + Delta-G solvation = -3524.809641 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 317.210 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -40.79957 -40.36523 -37.15516 -36.68031 -35.13867 -35.03857 -33.33144 -32.12402 -31.77427 -29.60362 -28.44126 -26.27002 -24.61121 -23.60113 -23.17083 -22.27104 -22.21414 -21.22979 -21.00129 -18.97908 -17.94978 -17.11222 -17.06252 -16.78787 -16.65613 -16.20046 -16.01214 -15.92689 -15.38295 -14.80258 -14.77939 -14.71288 -14.52116 -14.42788 -14.21278 -13.83199 -13.65837 -13.63333 -13.24823 -13.01721 -12.75541 -12.71992 -12.60265 -12.46676 -12.28602 -11.97181 -11.94212 -11.91777 -11.78429 -11.60423 -11.57225 -11.55115 -11.46780 -11.34029 -10.81298 -10.76993 -10.05760 -9.78343 -9.34126 -8.30308 -6.34169 0.45397 0.54018 1.35805 1.37592 1.49228 1.69846 2.29018 2.35476 2.86280 3.05627 3.77452 3.83763 3.90020 3.94129 4.08141 4.11813 4.17216 4.18948 4.23907 4.26445 4.34682 4.49930 4.50765 4.54805 4.65078 4.66530 4.72166 4.77564 4.86259 4.88104 4.88466 4.91998 4.95267 5.00606 5.03383 5.14459 5.15227 5.23597 5.30607 5.32272 5.39645 5.44017 5.44801 5.53155 5.54889 5.57211 5.64508 5.76819 5.78809 6.17875 6.26689 6.63134 6.74154 7.30855 7.32220 8.86160 Molecular weight = 317.21amu Principal moments of inertia in cm(-1) A = 0.038604 B = 0.001420 C = 0.001393 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 725.147071 B =19719.792207 C =20098.021922 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.115 4.115 3 C -0.079 4.079 4 C -0.097 4.097 5 C -0.128 4.128 6 C -0.127 4.127 7 C -0.097 4.097 8 C -0.073 4.073 9 C -0.091 4.091 10 C -0.130 4.130 11 C 0.501 3.499 12 O -0.595 6.595 13 N -0.720 5.720 14 C 0.125 3.875 15 C -0.100 4.100 16 C -0.013 4.013 17 C -0.532 4.532 18 H 0.039 0.961 19 C 0.007 3.993 20 N -0.950 5.950 21 Si 0.945 3.055 22 H -0.267 1.267 23 H -0.283 1.283 24 H -0.250 1.250 25 C -0.126 4.126 26 C -0.128 4.128 27 H 0.057 0.943 28 H 0.058 0.942 29 H 0.057 0.943 30 H 0.059 0.941 31 H 0.059 0.941 32 H 0.074 0.926 33 H 0.074 0.926 34 H 0.131 0.869 35 H 0.131 0.869 36 H 0.088 0.912 37 H 0.088 0.912 38 H 0.050 0.950 39 H 0.050 0.950 40 H 0.122 0.878 41 H 0.121 0.879 42 H 0.416 0.584 43 H 0.053 0.947 44 H 0.054 0.946 45 H 0.065 0.935 46 H 0.065 0.935 47 H 0.019 0.981 48 H 0.018 0.982 49 H 0.266 0.734 50 H 0.131 0.869 51 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -32.715 -22.066 -0.004 39.461 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.152 4.152 3 C -0.116 4.116 4 C -0.097 4.097 5 C -0.146 4.146 6 C -0.144 4.144 7 C -0.097 4.097 8 C -0.110 4.110 9 C -0.130 4.130 10 C -0.169 4.169 11 C 0.290 3.710 12 O -0.476 6.476 13 N -0.372 5.372 14 C 0.001 3.999 15 C -0.137 4.137 16 C -0.051 4.051 17 C -0.570 4.570 18 H 0.057 0.943 19 C -0.190 4.190 20 N -0.591 5.591 21 Si 0.769 3.231 22 H -0.193 1.193 23 H -0.209 1.209 24 H -0.173 1.173 25 C -0.144 4.144 26 C -0.146 4.146 27 H 0.076 0.924 28 H 0.077 0.923 29 H 0.076 0.924 30 H 0.077 0.923 31 H 0.077 0.923 32 H 0.093 0.907 33 H 0.093 0.907 34 H 0.149 0.851 35 H 0.149 0.851 36 H 0.106 0.894 37 H 0.106 0.894 38 H 0.069 0.931 39 H 0.069 0.931 40 H 0.140 0.860 41 H 0.140 0.860 42 H 0.253 0.747 43 H 0.071 0.929 44 H 0.072 0.928 45 H 0.084 0.916 46 H 0.084 0.916 47 H 0.037 0.963 48 H 0.036 0.964 49 H 0.075 0.925 50 H 0.149 0.851 51 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -33.115 -21.310 -0.008 39.379 hybrid contribution 0.644 0.849 0.017 1.066 sum -32.471 -20.461 0.009 38.380 Atomic orbital electron populations 1.21784 0.94912 1.02084 1.02157 1.21469 0.96258 0.95515 1.01991 1.20648 0.89859 0.97851 1.03236 1.20128 0.96584 0.99787 0.93201 1.21253 0.94374 1.00800 0.98186 1.21289 0.94527 1.00424 0.98205 1.20103 0.96550 0.99735 0.93272 1.20605 0.89991 0.95959 1.04444 1.21207 0.93321 0.96430 1.02007 1.21739 0.96946 0.91174 1.07086 1.21577 0.81777 0.93101 0.74559 1.90684 1.56491 1.48604 1.51867 1.46066 1.07451 1.09055 1.74600 1.21260 0.94378 0.83299 1.00976 1.21474 0.92030 0.98020 1.02222 1.19473 0.94129 0.94817 0.96675 1.21473 0.91874 0.93325 1.50296 0.94288 1.25948 0.95539 1.03312 0.94167 1.70052 1.08195 1.28144 1.52683 0.85725 0.79493 0.78676 0.79185 1.19251 1.20910 1.17327 1.21289 0.94518 1.00424 0.98208 1.21253 0.94382 1.00798 0.98179 0.92418 0.92286 0.92409 0.92260 0.92260 0.90711 0.90709 0.85132 0.85145 0.89366 0.89371 0.93135 0.93136 0.86027 0.86045 0.74692 0.92892 0.92807 0.91611 0.91638 0.96253 0.96360 0.92479 0.85135 0.85129 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.18 9.91 71.98 0.71 -0.47 16 2 C -0.11 -1.13 5.92 30.60 0.18 -0.95 16 3 C -0.08 -0.88 5.34 29.85 0.16 -0.72 16 4 C -0.10 -1.47 5.13 -19.87 -0.10 -1.57 16 5 C -0.13 -2.00 9.70 22.27 0.22 -1.78 16 6 C -0.13 -2.05 9.70 22.27 0.22 -1.83 16 7 C -0.10 -1.56 5.13 -19.86 -0.10 -1.67 16 8 C -0.07 -0.91 5.35 29.85 0.16 -0.75 16 9 C -0.09 -1.60 4.49 30.59 0.14 -1.46 16 10 C -0.13 -1.93 5.70 29.85 0.17 -1.76 16 11 C 0.50 12.86 7.83 87.66 0.69 13.55 16 12 O -0.60 -21.30 15.98 -3.03 -0.05 -21.34 16 13 N -0.72 -17.71 5.56 -463.03 -2.57 -20.29 16 14 C 0.13 3.99 5.67 86.38 0.49 4.48 16 15 C -0.10 -3.58 5.27 30.59 0.16 -3.42 16 16 C -0.01 -0.59 4.04 29.85 0.12 -0.47 16 17 C -0.53 -30.22 9.66 25.60 0.25 -29.97 16 18 H 0.04 2.40 7.99 -2.91 -0.02 2.38 16 19 C 0.01 0.43 5.47 84.65 0.46 0.89 16 20 N -0.95 -59.35 13.96 21.45 0.30 -59.05 16 21 Si 0.95 44.55 27.47 68.60 1.88 46.44 16 22 H -0.27 -12.15 7.11 99.48 0.71 -11.44 16 23 H -0.28 -13.08 7.11 99.48 0.71 -12.38 16 24 H -0.25 -11.07 6.54 99.48 0.65 -10.42 16 25 C -0.13 -2.04 9.70 22.27 0.22 -1.83 16 26 C -0.13 -2.00 9.70 22.27 0.22 -1.78 16 27 H 0.06 0.42 8.14 -2.39 -0.02 0.40 16 28 H 0.06 0.41 8.14 -2.39 -0.02 0.39 16 29 H 0.06 0.42 8.14 -2.39 -0.02 0.40 16 30 H 0.06 0.62 8.14 -2.38 -0.02 0.60 16 31 H 0.06 0.62 8.14 -2.38 -0.02 0.60 16 32 H 0.07 0.77 8.08 -2.39 -0.02 0.75 16 33 H 0.07 0.77 8.09 -2.39 -0.02 0.75 16 34 H 0.13 1.60 8.06 -2.91 -0.02 1.58 16 35 H 0.13 1.73 8.06 -2.91 -0.02 1.71 16 36 H 0.09 0.85 8.08 -2.39 -0.02 0.83 16 37 H 0.09 0.85 8.09 -2.39 -0.02 0.83 16 38 H 0.05 1.09 8.10 -2.39 -0.02 1.07 16 39 H 0.05 1.09 8.10 -2.38 -0.02 1.07 16 40 H 0.12 1.18 8.14 -2.39 -0.02 1.16 16 41 H 0.12 1.18 8.14 -2.39 -0.02 1.16 16 42 H 0.42 7.48 8.47 -92.71 -0.79 6.69 16 43 H 0.05 1.81 8.14 -2.38 -0.02 1.79 16 44 H 0.05 1.83 8.14 -2.39 -0.02 1.81 16 45 H 0.07 2.29 8.14 -2.38 -0.02 2.27 16 46 H 0.06 2.28 8.14 -2.39 -0.02 2.26 16 47 H 0.02 0.88 7.20 -2.39 -0.02 0.86 16 48 H 0.02 0.82 7.57 -2.39 -0.02 0.80 16 49 H 0.27 15.53 8.31 -92.71 -0.77 14.76 16 50 H 0.13 1.73 8.06 -2.91 -0.02 1.70 16 51 H 0.13 1.60 8.06 -2.91 -0.02 1.58 16 Total: -1.00 -73.73 417.31 3.94 -69.79 By element: Atomic # 1 Polarization: 15.93 SS G_CDS: 0.03 Total: 15.96 kcal Atomic # 6 Polarization: -35.86 SS G_CDS: 4.35 Total: -31.51 kcal Atomic # 7 Polarization: -77.06 SS G_CDS: -2.27 Total: -79.33 kcal Atomic # 8 Polarization: -21.30 SS G_CDS: -0.05 Total: -21.34 kcal Atomic # 14 Polarization: 44.55 SS G_CDS: 1.88 Total: 46.44 kcal Total: -73.73 3.94 -69.79 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592591152.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.068 kcal (2) G-P(sol) polarization free energy of solvation -73.727 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.795 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.939 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.788 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.856 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds