Wall clock time and date at job start Tue Mar 31 2020 11:31:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.38240 * 120.00110 * 2 1 4 4 C 1.38235 * 120.00223 * 179.72296 * 3 2 1 5 5 C 1.38230 * 119.99909 * 0.27910 * 4 3 2 6 6 C 1.38238 * 120.00225 * 359.95717 * 5 4 3 7 7 C 1.50697 * 120.00317 * 180.02562 * 6 5 4 8 8 C 1.38234 * 120.00494 * 180.18840 * 2 1 3 9 9 C 1.50708 * 119.99490 * 0.02562 * 8 2 1 10 10 N 1.46500 * 109.46747 * 260.57296 * 9 8 2 11 11 C 1.46494 * 120.00265 * 82.26065 * 10 9 8 12 12 C 1.52997 * 109.47312 * 96.27983 * 11 10 9 13 13 C 1.53003 * 109.47351 * 173.86372 * 12 11 10 14 14 C 1.53005 * 109.47111 * 293.86392 * 12 11 10 15 15 C 1.34777 * 120.00100 * 262.25973 * 10 9 8 16 16 O 1.21284 * 119.99961 * 354.55476 * 15 10 9 17 17 C 1.50701 * 120.00450 * 174.55111 * 15 10 9 18 18 C 1.52999 * 109.47297 * 180.02562 * 17 15 10 19 19 C 1.50699 * 109.47068 * 180.02562 * 18 17 15 20 20 H 1.07998 * 119.99942 * 359.97438 * 19 18 17 21 21 C 1.37874 * 120.00155 * 179.97438 * 19 18 17 22 22 N 1.31521 * 119.99827 * 359.97438 * 21 19 18 23 23 Si 1.86798 * 120.00258 * 179.97438 * 21 19 18 24 24 H 1.48498 * 109.46875 * 60.00524 * 23 21 19 25 25 H 1.48494 * 109.47014 * 180.02562 * 23 21 19 26 26 H 1.48500 * 109.47169 * 300.00514 * 23 21 19 27 27 H 1.09000 * 109.47479 * 86.77521 * 1 2 3 28 28 H 1.08997 * 109.47257 * 206.77985 * 1 2 3 29 29 H 1.08997 * 109.47113 * 326.77679 * 1 2 3 30 30 H 1.08009 * 119.99879 * 359.97438 * 3 2 1 31 31 H 1.08007 * 119.99993 * 180.25001 * 4 3 2 32 32 H 1.07995 * 120.00114 * 179.97438 * 5 4 3 33 33 H 1.08997 * 109.47536 * 85.00169 * 7 6 5 34 34 H 1.09001 * 109.47292 * 205.00872 * 7 6 5 35 35 H 1.09000 * 109.46571 * 325.00049 * 7 6 5 36 36 H 1.08997 * 109.47003 * 20.56848 * 9 8 2 37 37 H 1.08995 * 109.46646 * 140.57513 * 9 8 2 38 38 H 1.09007 * 109.47392 * 216.28065 * 11 10 9 39 39 H 1.09006 * 109.46974 * 336.27601 * 11 10 9 40 40 H 1.08998 * 109.47187 * 53.86084 * 12 11 10 41 41 H 1.08998 * 109.47209 * 59.99727 * 13 12 11 42 42 H 1.09002 * 109.46698 * 180.02562 * 13 12 11 43 43 H 1.08998 * 109.47080 * 299.99795 * 13 12 11 44 44 H 1.09004 * 109.46894 * 305.49009 * 14 12 11 45 45 H 1.08994 * 109.47284 * 65.48664 * 14 12 11 46 46 H 1.08993 * 109.47230 * 185.49035 * 14 12 11 47 47 H 1.08997 * 109.47066 * 300.00258 * 17 15 10 48 48 H 1.08996 * 109.46453 * 60.00121 * 17 15 10 49 49 H 1.09010 * 109.46827 * 300.00093 * 18 17 15 50 50 H 1.08996 * 109.47063 * 59.99644 * 18 17 15 51 51 H 0.96999 * 119.99651 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1982 1.1972 0.0000 4 6 3.5805 1.1972 0.0058 5 6 4.2717 0.0001 0.0057 6 6 3.5806 -1.1971 0.0008 7 6 4.3340 -2.5022 0.0013 8 6 2.1982 -1.1971 -0.0039 9 6 1.4447 -2.5022 -0.0088 10 7 1.3960 -3.0430 1.3519 11 6 0.3861 -2.5594 2.2966 12 6 -0.8104 -3.5128 2.2965 13 6 -1.7956 -3.0950 3.3900 14 6 -1.5063 -3.4579 0.9350 15 6 2.2802 -3.9854 1.7346 16 8 3.0516 -4.4571 0.9263 17 6 2.3105 -4.4530 3.1669 18 6 3.3973 -5.5171 3.3331 19 6 3.4271 -5.9851 4.7653 20 1 2.7400 -5.5653 5.4850 21 6 4.3316 -6.9493 5.1567 22 7 5.1680 -7.4609 4.2801 23 14 4.3692 -7.5289 6.9321 24 1 3.0498 -8.1077 7.2918 25 1 5.4238 -8.5617 7.0934 26 1 4.6640 -6.3777 7.8226 27 1 -0.3634 0.0578 -1.0260 28 1 -0.3633 -0.9174 0.4630 29 1 -0.3633 0.8597 0.5630 30 1 1.6581 2.1326 -0.0004 31 1 4.1205 2.1326 0.0099 32 1 5.3516 0.0001 0.0098 33 1 4.5893 -2.7740 1.0256 34 1 3.7109 -3.2817 -0.4370 35 1 5.2470 -2.3947 -0.5843 36 1 0.4299 -2.3345 -0.3697 37 1 1.9508 -3.2114 -0.6637 38 1 0.8160 -2.5159 3.2974 39 1 0.0574 -1.5636 1.9988 40 1 -0.4653 -4.5290 2.4874 41 1 -2.1407 -2.0788 3.1992 42 1 -2.6478 -3.7746 3.3902 43 1 -1.2999 -3.1342 4.3600 44 1 -1.7647 -2.4252 0.7005 45 1 -0.8365 -3.8477 0.1686 46 1 -2.4134 -4.0613 0.9660 47 1 2.5269 -3.6080 3.8204 48 1 1.3421 -4.8778 3.4309 49 1 3.1812 -6.3622 2.6794 50 1 4.3655 -5.0919 3.0691 51 1 5.8046 -8.1390 4.5556 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000592672807.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:31:57 Heat of formation + Delta-G solvation = -50.999361 kcal Electronic energy + Delta-G solvation = -28063.621156 eV Core-core repulsion = 24540.323032 eV Total energy + Delta-G solvation = -3523.298124 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 317.210 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.61757 -40.06267 -37.90328 -35.69324 -35.00667 -34.43923 -33.47708 -32.58458 -29.35652 -28.20441 -27.78402 -27.59864 -27.10461 -26.07360 -23.51536 -21.73472 -21.58372 -21.43182 -19.78373 -18.75032 -17.77579 -17.40618 -17.25933 -16.51501 -16.42806 -16.35256 -15.67563 -15.46022 -15.00181 -14.92355 -14.55184 -14.27696 -14.22721 -14.00174 -13.94552 -13.79696 -13.59525 -13.52671 -13.26545 -13.19443 -12.86289 -12.80287 -12.64102 -12.49938 -12.43978 -12.38806 -12.10564 -12.05391 -11.85378 -11.69103 -11.67679 -11.51190 -11.34246 -11.29684 -10.56426 -10.52021 -9.65021 -9.45202 -9.41709 -8.18070 -6.32008 0.37422 0.46843 1.40321 1.44793 1.52499 1.75775 2.14294 2.42588 2.88517 3.14609 3.69689 3.79191 3.91055 3.95619 4.00504 4.06925 4.13675 4.23218 4.27459 4.42444 4.44510 4.49202 4.50237 4.59341 4.63312 4.74071 4.74176 4.80326 4.84624 4.87020 4.89683 4.91213 5.00514 5.05208 5.06664 5.09148 5.13126 5.31907 5.35291 5.38346 5.48170 5.49899 5.51188 5.59334 5.63619 5.66644 5.70690 5.81432 5.85501 6.16119 6.18237 6.45780 6.85700 7.34903 7.38618 8.94156 Molecular weight = 317.21amu Principal moments of inertia in cm(-1) A = 0.012529 B = 0.004011 C = 0.003349 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2234.237615 B = 6978.859397 C = 8358.556619 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.071 4.071 3 C -0.133 4.133 4 C -0.112 4.112 5 C -0.148 4.148 6 C -0.080 4.080 7 C -0.115 4.115 8 C -0.121 4.121 9 C 0.149 3.851 10 N -0.599 5.599 11 C 0.107 3.893 12 C -0.117 4.117 13 C -0.140 4.140 14 C -0.144 4.144 15 C 0.508 3.492 16 O -0.565 6.565 17 C -0.115 4.115 18 C 0.050 3.950 19 C -0.543 4.543 20 H 0.071 0.929 21 C -0.004 4.004 22 N -0.936 5.936 23 Si 0.971 3.029 24 H -0.262 1.262 25 H -0.286 1.286 26 H -0.264 1.264 27 H 0.085 0.915 28 H 0.075 0.925 29 H 0.087 0.913 30 H 0.149 0.851 31 H 0.144 0.856 32 H 0.121 0.879 33 H 0.038 0.962 34 H 0.082 0.918 35 H 0.057 0.943 36 H 0.112 0.888 37 H 0.071 0.929 38 H 0.074 0.926 39 H 0.106 0.894 40 H 0.050 0.950 41 H 0.074 0.926 42 H 0.061 0.939 43 H 0.053 0.947 44 H 0.076 0.924 45 H 0.040 0.960 46 H 0.060 0.940 47 H 0.088 0.912 48 H 0.095 0.905 49 H -0.018 1.018 50 H -0.020 1.020 51 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.726 20.067 -7.877 26.684 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.071 4.071 3 C -0.151 4.151 4 C -0.130 4.130 5 C -0.166 4.166 6 C -0.080 4.080 7 C -0.171 4.171 8 C -0.123 4.123 9 C 0.027 3.973 10 N -0.331 5.331 11 C -0.015 4.015 12 C -0.137 4.137 13 C -0.198 4.198 14 C -0.201 4.201 15 C 0.298 3.702 16 O -0.444 6.444 17 C -0.155 4.155 18 C 0.012 3.988 19 C -0.581 4.581 20 H 0.089 0.911 21 C -0.201 4.201 22 N -0.576 5.576 23 Si 0.794 3.206 24 H -0.186 1.186 25 H -0.212 1.212 26 H -0.188 1.188 27 H 0.104 0.896 28 H 0.093 0.907 29 H 0.106 0.894 30 H 0.167 0.833 31 H 0.161 0.839 32 H 0.139 0.861 33 H 0.057 0.943 34 H 0.100 0.900 35 H 0.076 0.924 36 H 0.129 0.871 37 H 0.089 0.911 38 H 0.093 0.907 39 H 0.124 0.876 40 H 0.069 0.931 41 H 0.093 0.907 42 H 0.080 0.920 43 H 0.072 0.928 44 H 0.095 0.905 45 H 0.059 0.941 46 H 0.079 0.921 47 H 0.106 0.894 48 H 0.113 0.887 49 H 0.001 0.999 50 H -0.001 1.001 51 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -15.202 19.686 -8.327 26.229 hybrid contribution 1.121 -0.985 0.674 1.637 sum -14.081 18.701 -7.653 24.629 Atomic orbital electron populations 1.21109 0.89101 1.04042 1.03793 1.20059 0.97467 0.91716 0.97878 1.21317 0.94092 0.98239 1.01414 1.21411 0.95035 0.97878 0.98640 1.21195 1.00217 0.92388 1.02786 1.19994 0.94254 0.95268 0.98533 1.21078 1.00029 0.95143 1.00885 1.20051 0.92958 0.95678 1.03570 1.20453 1.01159 0.91694 0.83985 1.47925 1.32439 1.39426 1.13285 1.21992 0.87717 0.98725 0.93051 1.21578 0.95637 0.99030 0.97419 1.21742 0.98351 1.02416 0.97276 1.21879 0.99928 1.02843 0.95472 1.21166 0.79198 0.78769 0.91032 1.90600 1.41830 1.57150 1.54822 1.21618 1.01812 1.00066 0.91968 1.18618 0.92425 0.92433 0.95308 1.21648 1.18733 1.22084 0.95663 0.91063 1.26089 0.94931 0.96499 1.02595 1.70171 1.21724 1.28996 1.36668 0.85424 0.78199 0.78145 0.78809 1.18639 1.21197 1.18828 0.89619 0.90681 0.89434 0.83291 0.83867 0.86134 0.94338 0.89961 0.92375 0.87059 0.91085 0.90738 0.87611 0.93142 0.90697 0.92002 0.92783 0.90513 0.94053 0.92067 0.89354 0.88696 0.99917 1.00132 0.92888 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.49 8.94 71.23 0.64 -0.85 16 2 C -0.07 -1.38 5.88 -19.87 -0.12 -1.50 16 3 C -0.13 -2.38 9.72 22.27 0.22 -2.17 16 4 C -0.11 -2.27 10.05 22.27 0.22 -2.04 16 5 C -0.15 -3.85 9.72 22.27 0.22 -3.63 16 6 C -0.08 -2.42 5.88 -19.87 -0.12 -2.53 16 7 C -0.12 -4.15 7.91 71.24 0.56 -3.59 16 8 C -0.12 -3.14 5.44 -19.86 -0.11 -3.25 16 9 C 0.15 3.88 4.26 85.64 0.37 4.24 16 10 N -0.60 -17.33 2.23 -826.15 -1.85 -19.18 16 11 C 0.11 2.31 4.47 86.38 0.39 2.70 16 12 C -0.12 -2.30 2.97 -10.79 -0.03 -2.33 16 13 C -0.14 -2.12 9.19 71.98 0.66 -1.46 16 14 C -0.14 -2.36 8.13 71.98 0.59 -1.77 16 15 C 0.51 20.25 6.93 87.66 0.61 20.86 16 16 O -0.57 -26.86 11.29 -3.04 -0.03 -26.89 16 17 C -0.11 -4.90 4.18 29.85 0.12 -4.78 16 18 C 0.05 2.84 4.26 29.85 0.13 2.97 16 19 C -0.54 -31.62 9.11 25.60 0.23 -31.39 16 20 H 0.07 3.81 7.74 -2.91 -0.02 3.78 16 21 C 0.00 -0.21 5.46 84.65 0.46 0.25 16 22 N -0.94 -60.07 13.29 21.45 0.28 -59.78 16 23 Si 0.97 44.94 29.54 68.60 2.03 46.96 16 24 H -0.26 -11.42 7.11 99.48 0.71 -10.72 16 25 H -0.29 -13.12 7.11 99.48 0.71 -12.41 16 26 H -0.26 -11.56 7.11 99.48 0.71 -10.86 16 27 H 0.09 0.83 8.14 -2.39 -0.02 0.81 16 28 H 0.07 0.89 2.75 -2.39 -0.01 0.88 16 29 H 0.09 0.74 8.11 -2.39 -0.02 0.72 16 30 H 0.15 1.73 8.06 -2.91 -0.02 1.71 16 31 H 0.14 2.11 8.06 -2.91 -0.02 2.09 16 32 H 0.12 2.94 8.06 -2.91 -0.02 2.92 16 33 H 0.04 1.63 7.23 -2.39 -0.02 1.61 16 34 H 0.08 3.22 4.01 -2.39 -0.01 3.21 16 35 H 0.06 1.91 8.12 -2.39 -0.02 1.89 16 36 H 0.11 2.16 4.48 -2.39 -0.01 2.15 16 37 H 0.07 2.24 5.73 -2.39 -0.01 2.23 16 38 H 0.07 1.72 6.69 -2.38 -0.02 1.70 16 39 H 0.11 1.74 5.44 -2.38 -0.01 1.72 16 40 H 0.05 1.30 6.95 -2.39 -0.02 1.28 16 41 H 0.07 0.83 8.14 -2.39 -0.02 0.81 16 42 H 0.06 0.89 8.14 -2.39 -0.02 0.87 16 43 H 0.05 0.89 8.14 -2.39 -0.02 0.87 16 44 H 0.08 0.88 6.92 -2.38 -0.02 0.87 16 45 H 0.04 0.81 6.70 -2.39 -0.02 0.80 16 46 H 0.06 0.93 8.14 -2.39 -0.02 0.91 16 47 H 0.09 3.50 7.59 -2.39 -0.02 3.49 16 48 H 0.09 3.68 6.76 -2.39 -0.02 3.66 16 49 H -0.02 -1.13 8.10 -2.38 -0.02 -1.15 16 50 H -0.02 -1.27 8.10 -2.39 -0.02 -1.29 16 51 H 0.26 15.81 8.31 -92.71 -0.77 15.04 16 Total: -1.00 -75.94 384.78 6.38 -69.56 By element: Atomic # 1 Polarization: 18.69 SS G_CDS: 0.91 Total: 19.60 kcal Atomic # 6 Polarization: -35.31 SS G_CDS: 5.04 Total: -30.27 kcal Atomic # 7 Polarization: -77.40 SS G_CDS: -1.56 Total: -78.96 kcal Atomic # 8 Polarization: -26.86 SS G_CDS: -0.03 Total: -26.89 kcal Atomic # 14 Polarization: 44.94 SS G_CDS: 2.03 Total: 46.96 kcal Total: -75.94 6.38 -69.56 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592672807.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.563 kcal (2) G-P(sol) polarization free energy of solvation -75.943 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.380 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.381 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.562 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.999 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds