Wall clock time and date at job start Tue Mar 31 2020 12:04:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.53000 * 109.46841 * 2 1 4 4 C 1.50696 * 109.46730 * 179.97438 * 3 2 1 5 5 C 1.38238 * 119.99767 * 90.00546 * 4 3 2 6 6 C 1.38235 * 120.00108 * 179.97438 * 5 4 3 7 7 C 1.38243 * 119.99617 * 0.02562 * 6 5 4 8 8 C 1.50706 * 119.99586 * 179.97438 * 7 6 5 9 9 C 1.53000 * 109.47116 * 89.99867 * 8 7 6 10 10 C 1.52996 * 109.47210 * 179.97438 * 9 8 7 11 11 C 1.50703 * 109.47094 * 179.97438 * 10 9 8 12 12 O 1.21281 * 119.99990 * 0.02562 * 11 10 9 13 13 N 1.34780 * 119.99575 * 180.02562 * 11 10 9 14 14 C 1.46492 * 120.00506 * 0.02562 * 13 11 10 15 15 C 1.52999 * 109.47041 * 89.99630 * 14 13 11 16 16 C 1.46505 * 119.99588 * 180.02562 * 13 11 10 17 17 C 1.50697 * 109.47129 * 90.00082 * 16 13 11 18 18 H 1.08004 * 120.00054 * 359.97438 * 17 16 13 19 19 C 1.37882 * 120.00029 * 179.97438 * 17 16 13 20 20 N 1.31507 * 119.99774 * 0.02562 * 19 17 16 21 21 Si 1.86797 * 119.99836 * 179.97438 * 19 17 16 22 22 H 1.48497 * 109.47286 * 60.00200 * 21 19 17 23 23 H 1.48504 * 109.46822 * 179.97438 * 21 19 17 24 24 H 1.48499 * 109.47430 * 300.00019 * 21 19 17 25 25 C 1.38233 * 120.00248 * 0.25361 * 7 6 5 26 26 C 1.38234 * 120.00185 * 270.01952 * 4 3 2 27 27 H 1.09000 * 109.46823 * 60.00646 * 1 2 3 28 28 H 1.08999 * 109.46740 * 179.97438 * 1 2 3 29 29 H 1.08991 * 109.47490 * 300.00044 * 1 2 3 30 30 H 1.09004 * 109.47260 * 239.99759 * 2 1 3 31 31 H 1.09005 * 109.46739 * 119.99839 * 2 1 3 32 32 H 1.09000 * 109.46955 * 60.00000 * 3 2 1 33 33 H 1.09000 * 109.46884 * 299.99316 * 3 2 1 34 34 H 1.08000 * 120.00559 * 359.97438 * 5 4 3 35 35 H 1.07999 * 120.00165 * 179.97438 * 6 5 4 36 36 H 1.09000 * 109.46646 * 209.99280 * 8 7 6 37 37 H 1.09000 * 109.47248 * 329.99998 * 8 7 6 38 38 H 1.09000 * 109.47214 * 300.00167 * 9 8 7 39 39 H 1.09008 * 109.47142 * 59.99333 * 9 8 7 40 40 H 1.08997 * 109.47037 * 300.00424 * 10 9 8 41 41 H 1.09000 * 109.46839 * 60.00324 * 10 9 8 42 42 H 1.09001 * 109.47284 * 209.99876 * 14 13 11 43 43 H 1.09004 * 109.47048 * 329.99889 * 14 13 11 44 44 H 1.08996 * 109.47279 * 60.00389 * 15 14 13 45 45 H 1.09006 * 109.46987 * 180.02562 * 15 14 13 46 46 H 1.08993 * 109.47553 * 300.00164 * 15 14 13 47 47 H 1.08995 * 109.46831 * 210.00061 * 16 13 11 48 48 H 1.09004 * 109.47224 * 330.00339 * 16 13 11 49 49 H 0.96999 * 119.99994 * 180.02562 * 20 19 17 50 50 H 1.08004 * 119.99934 * 179.72684 * 25 7 6 51 51 H 1.07999 * 119.99990 * 0.02562 * 26 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5470 1.4425 0.0006 5 6 4.2386 1.4424 -1.1963 6 6 5.6209 1.4429 -1.1958 7 6 6.3116 1.4430 0.0017 8 6 7.8187 1.4429 0.0023 9 6 8.3287 2.8854 0.0023 10 6 9.8587 2.8854 0.0035 11 6 10.3610 4.3063 0.0030 12 8 9.5729 5.2281 0.0022 13 7 11.6862 4.5525 0.0033 14 6 12.6381 3.4390 0.0037 15 6 12.9699 3.0512 -1.4387 16 6 12.1745 5.9337 0.0033 17 6 12.3416 6.4074 1.4241 18 1 12.1070 5.7459 2.2450 19 6 12.7939 7.6853 1.6761 20 7 13.0790 8.4909 0.6765 21 14 13.0003 8.2727 3.4373 22 1 13.9774 7.4016 4.1383 23 1 13.4966 9.6724 3.4372 24 1 11.6916 8.2110 4.1363 25 6 5.6200 1.4372 1.1986 26 6 4.2377 1.4422 1.1980 27 1 -0.3633 0.5137 -0.8901 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3634 0.5138 0.8899 30 1 1.8934 -0.5139 -0.8900 31 1 1.8933 -0.5138 0.8901 32 1 1.6766 1.9563 0.8900 33 1 1.6767 1.9563 -0.8901 34 1 3.6990 1.4420 -2.1318 35 1 6.1613 1.4424 -2.1309 36 1 8.1816 0.9292 0.8925 37 1 8.1824 0.9291 -0.8875 38 1 7.9657 3.3992 -0.8878 39 1 7.9650 3.3994 0.8922 40 1 10.2213 2.3717 0.8939 41 1 10.2227 2.3714 -0.8861 42 1 13.5506 3.7412 0.5177 43 1 12.1976 2.5845 0.5175 44 1 13.4104 3.9056 -1.9525 45 1 13.6779 2.2224 -1.4384 46 1 12.0575 2.7490 -1.9527 47 1 13.1348 5.9795 -0.5102 48 1 11.4566 6.5729 -0.5107 49 1 13.3975 9.3898 0.8537 50 1 6.1597 1.4328 2.1341 51 1 3.6973 1.4417 2.1331 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000592754042.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:04:59 Heat of formation + Delta-G solvation = -70.196738 kcal Electronic energy + Delta-G solvation = -25523.089731 eV Core-core repulsion = 21998.959147 eV Total energy + Delta-G solvation = -3524.130585 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 317.210 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -40.80092 -40.35726 -37.08542 -36.67821 -35.16805 -34.77567 -32.23677 -31.77006 -31.51811 -29.67980 -28.44479 -26.33925 -24.85191 -24.14708 -23.59510 -22.94902 -22.17131 -21.22469 -19.78201 -18.62783 -17.83920 -17.26570 -16.97482 -16.86413 -16.42528 -16.19812 -15.88177 -15.46939 -14.98462 -14.74072 -14.58615 -14.51077 -14.38280 -14.27657 -14.12629 -13.76208 -13.47619 -13.29020 -13.25322 -13.09227 -12.97287 -12.68538 -12.65173 -12.54386 -12.42031 -12.20175 -12.14281 -11.96304 -11.94733 -11.81307 -11.73254 -11.55116 -11.51844 -11.45197 -10.65293 -10.53476 -9.77765 -9.41028 -9.33479 -8.22943 -6.38209 0.45991 0.54572 1.34732 1.39478 1.46752 1.89997 2.32114 2.48071 2.86677 3.05915 3.75833 3.79166 3.90457 3.94474 4.07780 4.16822 4.17720 4.23032 4.27379 4.35210 4.44444 4.51360 4.55378 4.61688 4.65412 4.67839 4.72853 4.75532 4.87098 4.88374 4.91483 5.00835 5.01817 5.02773 5.07016 5.14927 5.15635 5.23003 5.24903 5.31256 5.33009 5.42142 5.44608 5.45770 5.57638 5.58355 5.76796 5.80058 5.88415 6.06744 6.18466 6.69850 6.85318 7.28138 7.54382 8.83783 Molecular weight = 317.21amu Principal moments of inertia in cm(-1) A = 0.017665 B = 0.002136 C = 0.001989 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1584.698602 B =13106.168016 C =14075.499695 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.115 4.115 3 C -0.078 4.078 4 C -0.097 4.097 5 C -0.127 4.127 6 C -0.126 4.126 7 C -0.096 4.096 8 C -0.069 4.069 9 C -0.089 4.089 10 C -0.123 4.123 11 C 0.490 3.510 12 O -0.605 6.605 13 N -0.606 5.606 14 C 0.099 3.901 15 C -0.161 4.161 16 C 0.261 3.739 17 C -0.544 4.544 18 H 0.053 0.947 19 C 0.005 3.995 20 N -0.929 5.929 21 Si 0.969 3.031 22 H -0.258 1.258 23 H -0.278 1.278 24 H -0.278 1.278 25 C -0.128 4.128 26 C -0.128 4.128 27 H 0.057 0.943 28 H 0.059 0.941 29 H 0.056 0.944 30 H 0.060 0.940 31 H 0.059 0.941 32 H 0.074 0.926 33 H 0.075 0.925 34 H 0.133 0.867 35 H 0.131 0.869 36 H 0.088 0.912 37 H 0.091 0.909 38 H 0.047 0.953 39 H 0.042 0.958 40 H 0.115 0.885 41 H 0.120 0.880 42 H 0.068 0.932 43 H 0.105 0.895 44 H 0.034 0.966 45 H 0.096 0.904 46 H 0.062 0.938 47 H 0.020 0.980 48 H -0.008 1.008 49 H 0.267 0.733 50 H 0.128 0.872 51 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.413 -23.293 -2.431 28.599 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.152 4.152 3 C -0.115 4.115 4 C -0.097 4.097 5 C -0.145 4.145 6 C -0.144 4.144 7 C -0.096 4.096 8 C -0.106 4.106 9 C -0.128 4.128 10 C -0.163 4.163 11 C 0.280 3.720 12 O -0.487 6.487 13 N -0.337 5.337 14 C -0.023 4.023 15 C -0.219 4.219 16 C 0.139 3.861 17 C -0.582 4.582 18 H 0.072 0.928 19 C -0.194 4.194 20 N -0.569 5.569 21 Si 0.793 3.207 22 H -0.183 1.183 23 H -0.203 1.203 24 H -0.204 1.204 25 C -0.146 4.146 26 C -0.146 4.146 27 H 0.076 0.924 28 H 0.078 0.922 29 H 0.075 0.925 30 H 0.079 0.921 31 H 0.077 0.923 32 H 0.092 0.908 33 H 0.094 0.906 34 H 0.151 0.849 35 H 0.149 0.851 36 H 0.106 0.894 37 H 0.110 0.890 38 H 0.066 0.934 39 H 0.061 0.939 40 H 0.133 0.867 41 H 0.138 0.862 42 H 0.087 0.913 43 H 0.123 0.877 44 H 0.053 0.947 45 H 0.114 0.886 46 H 0.081 0.919 47 H 0.038 0.962 48 H 0.010 0.990 49 H 0.076 0.924 50 H 0.146 0.854 51 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -16.715 -22.649 -2.484 28.258 hybrid contribution 0.335 1.277 0.672 1.482 sum -16.380 -21.372 -1.812 26.988 Atomic orbital electron populations 1.21783 0.94835 1.02127 1.02152 1.21471 0.96310 0.95399 1.02051 1.20647 0.89677 0.97977 1.03236 1.20143 0.96694 0.99777 0.93128 1.21257 0.94240 1.00739 0.98254 1.21295 0.94631 1.00378 0.98116 1.20095 0.96416 0.99713 0.93415 1.20585 0.90145 0.95358 1.04538 1.21196 0.93237 0.96751 1.01587 1.21749 0.96976 0.91227 1.06320 1.21629 0.81907 0.92975 0.75525 1.90632 1.56322 1.49089 1.52672 1.48335 1.06145 1.08115 1.71066 1.21756 0.93203 0.88801 0.98516 1.22156 1.02510 1.01659 0.95588 1.18664 0.92900 0.78697 0.95796 1.21703 1.44342 0.99074 0.93108 0.92839 1.25903 0.94853 0.96527 1.02108 1.70050 1.45641 1.08028 1.33133 0.85457 0.78561 0.77665 0.79062 1.18283 1.20292 1.20392 1.21290 0.94664 1.00505 0.98155 1.21247 0.94227 1.00834 0.98289 0.92390 0.92171 0.92456 0.92147 0.92255 0.90776 0.90642 0.84875 0.85068 0.89362 0.89003 0.93391 0.93871 0.86679 0.86200 0.91340 0.87671 0.94692 0.88551 0.91855 0.96224 0.98975 0.92431 0.85395 0.85066 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.50 9.91 71.98 0.71 -0.79 16 2 C -0.11 -1.42 5.92 30.60 0.18 -1.24 16 3 C -0.08 -1.12 5.34 29.85 0.16 -0.96 16 4 C -0.10 -1.85 5.13 -19.87 -0.10 -1.96 16 5 C -0.13 -2.47 9.70 22.27 0.22 -2.26 16 6 C -0.13 -2.63 9.70 22.27 0.22 -2.41 16 7 C -0.10 -2.09 5.13 -19.86 -0.10 -2.19 16 8 C -0.07 -1.31 5.35 29.85 0.16 -1.15 16 9 C -0.09 -2.44 4.49 30.59 0.14 -2.30 16 10 C -0.12 -3.28 4.25 29.85 0.13 -3.16 16 11 C 0.49 20.72 7.67 87.66 0.67 21.39 16 12 O -0.61 -32.72 15.56 -3.03 -0.05 -32.77 16 13 N -0.61 -26.10 2.46 -826.15 -2.03 -28.13 16 14 C 0.10 2.99 5.93 86.38 0.51 3.51 16 15 C -0.16 -3.91 10.24 71.98 0.74 -3.18 16 16 C 0.26 14.57 5.16 85.63 0.44 15.01 16 17 C -0.54 -32.21 9.39 25.60 0.24 -31.97 16 18 H 0.05 3.11 7.81 -2.91 -0.02 3.09 16 19 C 0.00 0.29 5.46 84.66 0.46 0.75 16 20 N -0.93 -57.54 13.29 21.45 0.28 -57.26 16 21 Si 0.97 45.81 29.54 68.60 2.03 47.83 16 22 H -0.26 -11.38 7.11 99.48 0.71 -10.68 16 23 H -0.28 -12.67 7.11 99.48 0.71 -11.96 16 24 H -0.28 -13.18 7.11 99.48 0.71 -12.47 16 25 C -0.13 -2.76 9.70 22.27 0.22 -2.54 16 26 C -0.13 -2.56 9.70 22.27 0.22 -2.35 16 27 H 0.06 0.54 8.14 -2.39 -0.02 0.52 16 28 H 0.06 0.53 8.14 -2.39 -0.02 0.51 16 29 H 0.06 0.54 8.14 -2.39 -0.02 0.52 16 30 H 0.06 0.77 8.14 -2.38 -0.02 0.75 16 31 H 0.06 0.77 8.14 -2.38 -0.02 0.75 16 32 H 0.07 1.00 8.08 -2.39 -0.02 0.98 16 33 H 0.07 1.00 8.09 -2.39 -0.02 0.98 16 34 H 0.13 2.07 8.06 -2.91 -0.02 2.04 16 35 H 0.13 2.33 8.06 -2.91 -0.02 2.31 16 36 H 0.09 1.40 8.08 -2.39 -0.02 1.38 16 37 H 0.09 1.38 8.09 -2.39 -0.02 1.36 16 38 H 0.05 1.50 8.10 -2.39 -0.02 1.48 16 39 H 0.04 1.40 8.10 -2.38 -0.02 1.38 16 40 H 0.12 2.46 7.40 -2.39 -0.02 2.44 16 41 H 0.12 2.41 7.19 -2.39 -0.02 2.39 16 42 H 0.07 2.23 8.07 -2.39 -0.02 2.21 16 43 H 0.11 2.33 6.44 -2.39 -0.02 2.32 16 44 H 0.03 1.02 8.14 -2.39 -0.02 1.00 16 45 H 0.10 1.66 8.14 -2.38 -0.02 1.64 16 46 H 0.06 1.39 7.22 -2.39 -0.02 1.37 16 47 H 0.02 1.12 8.07 -2.39 -0.02 1.10 16 48 H -0.01 -0.51 7.42 -2.38 -0.02 -0.53 16 49 H 0.27 15.50 8.31 -92.71 -0.77 14.73 16 50 H 0.13 2.44 8.06 -2.91 -0.02 2.42 16 51 H 0.13 2.15 8.06 -2.91 -0.02 2.13 16 Total: -1.00 -78.27 416.04 6.30 -71.97 By element: Atomic # 1 Polarization: 15.30 SS G_CDS: 0.86 Total: 16.16 kcal Atomic # 6 Polarization: -23.01 SS G_CDS: 5.20 Total: -17.80 kcal Atomic # 7 Polarization: -83.65 SS G_CDS: -1.74 Total: -85.39 kcal Atomic # 8 Polarization: -32.72 SS G_CDS: -0.05 Total: -32.77 kcal Atomic # 14 Polarization: 45.81 SS G_CDS: 2.03 Total: 47.83 kcal Total: -78.27 6.30 -71.97 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592754042.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.774 kcal (2) G-P(sol) polarization free energy of solvation -78.268 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.494 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.297 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.971 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.197 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds