Wall clock time and date at job start Tue Mar 31 2020 12:05:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.52991 * 109.47240 * 2 1 4 4 C 1.50701 * 109.47325 * 179.97438 * 3 2 1 5 5 C 1.38243 * 119.99813 * 89.99831 * 4 3 2 6 6 C 1.38225 * 119.99809 * 179.97438 * 5 4 3 7 7 C 1.38236 * 120.00262 * 0.02562 * 6 5 4 8 8 C 1.50701 * 120.00259 * 179.97438 * 7 6 5 9 9 C 1.53003 * 109.47171 * 89.99598 * 8 7 6 10 10 C 1.53000 * 109.47194 * 179.97438 * 9 8 7 11 11 C 1.50699 * 109.47242 * 179.97438 * 10 9 8 12 12 O 1.21280 * 119.99799 * 0.02562 * 11 10 9 13 13 N 1.34781 * 119.99910 * 180.02562 * 11 10 9 14 14 C 1.46497 * 120.00033 * 0.02562 * 13 11 10 15 15 C 1.46497 * 119.99894 * 180.02562 * 13 11 10 16 16 H 1.09007 * 109.47078 * 359.97438 * 15 13 11 17 17 C 1.53000 * 109.47021 * 240.00308 * 15 13 11 18 18 C 1.50694 * 109.47115 * 120.00089 * 15 13 11 19 19 H 1.08000 * 120.00563 * 359.97438 * 18 15 13 20 20 C 1.37885 * 119.99902 * 180.02562 * 18 15 13 21 21 N 1.31516 * 119.99913 * 359.97438 * 20 18 15 22 22 Si 1.86798 * 119.99766 * 179.97438 * 20 18 15 23 23 H 1.48500 * 109.47353 * 269.99586 * 22 20 18 24 24 H 1.48501 * 109.47293 * 30.00037 * 22 20 18 25 25 H 1.48504 * 109.46680 * 149.99835 * 22 20 18 26 26 C 1.38236 * 119.99829 * 0.25265 * 7 6 5 27 27 C 1.38232 * 120.00155 * 270.02139 * 4 3 2 28 28 H 1.09000 * 109.46994 * 59.99927 * 1 2 3 29 29 H 1.08997 * 109.46904 * 180.02562 * 1 2 3 30 30 H 1.09009 * 109.46696 * 300.00138 * 1 2 3 31 31 H 1.08996 * 109.46703 * 239.99465 * 2 1 3 32 32 H 1.09000 * 109.46994 * 120.00072 * 2 1 3 33 33 H 1.09005 * 109.47558 * 59.99808 * 3 2 1 34 34 H 1.09000 * 109.47187 * 299.99954 * 3 2 1 35 35 H 1.08004 * 119.99996 * 359.97438 * 5 4 3 36 36 H 1.08001 * 119.99895 * 179.97438 * 6 5 4 37 37 H 1.09005 * 109.46952 * 330.00111 * 8 7 6 38 38 H 1.09000 * 109.46957 * 209.99980 * 8 7 6 39 39 H 1.09005 * 109.46763 * 60.00398 * 9 8 7 40 40 H 1.09000 * 109.47492 * 300.00055 * 9 8 7 41 41 H 1.09005 * 109.46782 * 60.00603 * 10 9 8 42 42 H 1.09000 * 109.47558 * 300.00769 * 10 9 8 43 43 H 1.09001 * 109.46905 * 269.99961 * 14 13 11 44 44 H 1.09005 * 109.47144 * 29.99902 * 14 13 11 45 45 H 1.08993 * 109.47302 * 150.00089 * 14 13 11 46 46 H 1.09002 * 109.47106 * 299.99878 * 17 15 13 47 47 H 1.08998 * 109.47089 * 59.99825 * 17 15 13 48 48 H 1.08995 * 109.47131 * 179.97438 * 17 15 13 49 49 H 0.97001 * 119.99646 * 179.97438 * 21 20 18 50 50 H 1.07997 * 120.00071 * 179.72838 * 26 7 6 51 51 H 1.08002 * 119.99688 * 0.02562 * 27 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 3.5471 1.4424 0.0006 5 6 4.2388 1.4422 -1.1963 6 6 5.6210 1.4428 -1.1957 7 6 6.3117 1.4430 0.0017 8 6 7.8188 1.4430 0.0023 9 6 8.3288 2.8855 0.0022 10 6 9.8588 2.8856 0.0035 11 6 10.3611 4.3064 0.0027 12 8 9.5730 5.2282 0.0017 13 7 11.6862 4.5526 0.0031 14 6 12.6382 3.4391 0.0037 15 6 12.1745 5.9338 0.0029 16 1 11.3267 6.6190 0.0020 17 6 13.0249 6.1739 -1.2462 18 6 13.0113 6.1709 1.2335 19 1 13.1639 5.3728 1.9449 20 6 13.5815 7.4073 1.4518 21 7 13.3954 8.3794 0.5858 22 14 14.6181 7.7013 2.9777 23 1 13.7492 8.1833 4.0812 24 1 15.2743 6.4322 3.3825 25 1 15.6552 8.7224 2.6822 26 6 5.6201 1.4374 1.1986 27 6 4.2378 1.4422 1.1980 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0276 0.0005 30 1 -0.3633 0.5139 0.8901 31 1 1.8933 -0.5139 -0.8899 32 1 1.8934 -0.5138 0.8900 33 1 1.6768 1.9563 0.8900 34 1 1.6768 1.9562 -0.8900 35 1 3.6991 1.4416 -2.1319 36 1 6.1614 1.4422 -2.1308 37 1 8.1825 0.9290 -0.8875 38 1 8.1817 0.9294 0.8926 39 1 7.9651 3.3995 0.8920 40 1 7.9658 3.3992 -0.8881 41 1 10.2228 2.3715 -0.8861 42 1 10.2214 2.3720 0.8939 43 1 12.8739 3.1633 1.0315 44 1 12.1980 2.5845 -0.5101 45 1 13.5509 3.7411 -0.5099 46 1 13.8727 5.4888 -1.2457 47 1 12.4196 6.0024 -2.1363 48 1 13.3879 7.2017 -1.2465 49 1 13.7962 9.2492 0.7396 50 1 6.1597 1.4331 2.1341 51 1 3.6974 1.4415 2.1331 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000592761710.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:05:06 Heat of formation + Delta-G solvation = -48.169585 kcal Electronic energy + Delta-G solvation = -25516.821634 eV Core-core repulsion = 21993.646218 eV Total energy + Delta-G solvation = -3523.175415 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 317.210 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -39.73585 -39.02810 -36.09971 -35.31703 -34.12427 -32.82236 -31.31571 -31.00707 -29.51622 -27.91075 -26.08579 -25.38419 -25.13258 -22.82526 -22.70242 -21.69390 -20.63591 -20.38113 -18.17198 -16.64432 -16.30668 -16.09989 -15.98428 -15.41326 -15.33054 -15.03528 -14.69854 -14.24603 -13.97276 -13.77437 -13.69004 -13.44721 -13.05237 -12.79087 -12.59601 -12.52920 -12.36228 -12.26213 -11.76967 -11.73617 -11.58554 -11.51367 -11.29796 -11.20559 -11.15813 -11.01658 -10.90199 -10.81924 -10.77435 -10.63898 -10.50152 -10.21575 -10.14090 -9.14893 -8.99387 -8.86316 -8.54512 -8.39893 -7.53195 -6.05031 -4.12850 1.24439 1.33114 3.28042 3.34282 3.35815 3.48001 3.63028 4.03661 4.41604 4.48860 4.57138 4.75275 4.78015 4.79464 4.93234 5.05659 5.11443 5.13578 5.24662 5.25928 5.34435 5.39061 5.46697 5.47353 5.50493 5.59841 5.64565 5.68894 5.74536 5.78716 5.80416 5.91307 5.95308 5.99416 6.04938 6.09791 6.28325 6.32786 6.35002 6.51073 6.51483 6.61383 6.78887 6.85018 6.94074 7.09055 7.48346 7.56399 7.74760 8.04811 8.23189 8.59448 8.86875 9.13151 9.53754 11.00245 Molecular weight = 317.21amu Principal moments of inertia in cm(-1) A = 0.026226 B = 0.001923 C = 0.001887 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1067.403436 B =14559.473750 C =14832.917998 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.119 4.119 3 C -0.080 4.080 4 C -0.092 4.092 5 C -0.116 4.116 6 C -0.114 4.114 7 C -0.078 4.078 8 C -0.082 4.082 9 C -0.096 4.096 10 C -0.139 4.139 11 C 0.501 3.499 12 O -0.555 6.555 13 N -0.596 5.596 14 C 0.088 3.912 15 C 0.256 3.744 16 H 0.063 0.937 17 C -0.147 4.147 18 C -0.524 4.524 19 H 0.058 0.942 20 C 0.063 3.937 21 N -0.888 5.888 22 Si 0.899 3.101 23 H -0.280 1.280 24 H -0.275 1.275 25 H -0.286 1.286 26 C -0.114 4.114 27 C -0.116 4.116 28 H 0.054 0.946 29 H 0.054 0.946 30 H 0.054 0.946 31 H 0.062 0.938 32 H 0.062 0.938 33 H 0.070 0.930 34 H 0.070 0.930 35 H 0.118 0.882 36 H 0.121 0.879 37 H 0.071 0.929 38 H 0.071 0.929 39 H 0.070 0.930 40 H 0.069 0.931 41 H 0.085 0.915 42 H 0.086 0.914 43 H 0.047 0.953 44 H 0.052 0.948 45 H 0.071 0.929 46 H 0.029 0.971 47 H 0.011 0.989 48 H 0.093 0.907 49 H 0.263 0.737 50 H 0.121 0.879 51 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.574 -18.992 -2.704 26.016 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.156 4.156 3 C -0.117 4.117 4 C -0.092 4.092 5 C -0.134 4.134 6 C -0.132 4.132 7 C -0.078 4.078 8 C -0.119 4.119 9 C -0.134 4.134 10 C -0.179 4.179 11 C 0.288 3.712 12 O -0.434 6.434 13 N -0.327 5.327 14 C -0.056 4.056 15 C 0.156 3.844 16 H 0.080 0.920 17 C -0.205 4.205 18 C -0.563 4.563 19 H 0.076 0.924 20 C -0.139 4.139 21 N -0.527 5.527 22 Si 0.726 3.274 23 H -0.206 1.206 24 H -0.200 1.200 25 H -0.211 1.211 26 C -0.132 4.132 27 C -0.134 4.134 28 H 0.073 0.927 29 H 0.073 0.927 30 H 0.073 0.927 31 H 0.081 0.919 32 H 0.081 0.919 33 H 0.089 0.911 34 H 0.089 0.911 35 H 0.136 0.864 36 H 0.139 0.861 37 H 0.089 0.911 38 H 0.090 0.910 39 H 0.089 0.911 40 H 0.088 0.912 41 H 0.103 0.897 42 H 0.104 0.896 43 H 0.066 0.934 44 H 0.071 0.929 45 H 0.090 0.910 46 H 0.049 0.951 47 H 0.030 0.970 48 H 0.111 0.889 49 H 0.073 0.927 50 H 0.139 0.861 51 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -17.903 -18.293 -2.741 25.742 hybrid contribution 0.819 0.189 0.865 1.207 sum -17.083 -18.104 -1.876 24.962 Atomic orbital electron populations 1.21798 0.95761 1.01642 1.01862 1.21509 0.95556 0.96202 1.02339 1.20619 0.91079 0.97224 1.02812 1.19843 0.95471 1.00599 0.93278 1.20984 0.94149 1.00906 0.97393 1.21044 0.94086 1.00392 0.97702 1.19919 0.95854 0.98925 0.93122 1.20676 0.90626 0.97851 1.02761 1.21292 0.93445 0.94749 1.03896 1.21706 0.97003 0.95767 1.03434 1.20466 0.82779 0.90794 0.77199 1.90644 1.55028 1.46537 1.51193 1.48251 1.04636 1.09218 1.70628 1.21537 0.94295 0.88842 1.00965 1.18921 0.94873 0.76668 0.93959 0.91951 1.22087 0.98479 1.04076 0.95856 1.21327 1.31241 0.97343 1.06353 0.92354 1.24907 0.96428 0.95844 0.96712 1.69885 1.44625 1.02907 1.35237 0.86496 0.79885 0.77939 0.83051 1.20644 1.19956 1.21134 1.21059 0.94090 1.00291 0.97750 1.20989 0.94162 1.00845 0.97405 0.92702 0.92735 0.92702 0.91918 0.91913 0.91132 0.91137 0.86385 0.86115 0.91057 0.91006 0.91121 0.91206 0.89685 0.89582 0.93427 0.92937 0.91013 0.95148 0.97026 0.88861 0.92728 0.86074 0.86370 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.86 9.91 37.16 0.37 -0.49 16 2 C -0.12 -0.79 5.92 -26.73 -0.16 -0.95 16 3 C -0.08 -0.61 5.34 -27.89 -0.15 -0.76 16 4 C -0.09 -0.90 5.13 -104.62 -0.54 -1.43 16 5 C -0.12 -1.17 9.70 -39.58 -0.38 -1.55 16 6 C -0.11 -1.23 9.70 -39.59 -0.38 -1.61 16 7 C -0.08 -0.88 5.13 -104.62 -0.54 -1.42 16 8 C -0.08 -0.86 5.35 -27.88 -0.15 -1.01 16 9 C -0.10 -1.32 4.49 -26.73 -0.12 -1.44 16 10 C -0.14 -2.00 4.25 -27.88 -0.12 -2.12 16 11 C 0.50 10.41 7.67 -10.98 -0.08 10.32 16 12 O -0.55 -13.93 15.31 5.56 0.09 -13.85 16 13 N -0.60 -12.85 2.75 -175.27 -0.48 -13.34 16 14 C 0.09 1.47 9.48 59.85 0.57 2.03 16 15 C 0.26 6.67 2.63 -69.09 -0.18 6.48 16 16 H 0.06 1.89 6.90 -51.92 -0.36 1.53 16 17 C -0.15 -3.56 8.95 37.16 0.33 -3.22 16 18 C -0.52 -14.38 8.37 -34.44 -0.29 -14.67 16 19 H 0.06 1.58 7.65 -52.49 -0.40 1.18 16 20 C 0.06 1.75 5.30 -17.82 -0.09 1.65 16 21 N -0.89 -25.46 11.32 55.43 0.63 -24.84 16 22 Si 0.90 21.28 29.54 -169.99 -5.02 16.25 16 23 H -0.28 -6.69 7.11 56.52 0.40 -6.28 16 24 H -0.27 -6.35 7.11 56.52 0.40 -5.95 16 25 H -0.29 -6.67 7.11 56.52 0.40 -6.27 16 26 C -0.11 -1.24 9.70 -39.58 -0.38 -1.63 16 27 C -0.12 -1.18 9.70 -39.59 -0.38 -1.56 16 28 H 0.05 0.29 8.14 -51.93 -0.42 -0.13 16 29 H 0.05 0.28 8.14 -51.93 -0.42 -0.14 16 30 H 0.05 0.29 8.14 -51.92 -0.42 -0.13 16 31 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 32 H 0.06 0.44 8.14 -51.93 -0.42 0.01 16 33 H 0.07 0.51 8.09 -51.93 -0.42 0.09 16 34 H 0.07 0.50 8.09 -51.93 -0.42 0.08 16 35 H 0.12 0.97 8.06 -52.48 -0.42 0.55 16 36 H 0.12 1.13 8.06 -52.49 -0.42 0.71 16 37 H 0.07 0.66 8.09 -51.93 -0.42 0.24 16 38 H 0.07 0.68 8.08 -51.93 -0.42 0.26 16 39 H 0.07 1.10 8.10 -51.93 -0.42 0.68 16 40 H 0.07 1.06 8.10 -51.93 -0.42 0.64 16 41 H 0.08 1.03 7.40 -51.93 -0.38 0.64 16 42 H 0.09 1.09 8.11 -51.93 -0.42 0.67 16 43 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 44 H 0.05 0.68 6.44 -51.93 -0.33 0.34 16 45 H 0.07 1.22 6.43 -51.93 -0.33 0.89 16 46 H 0.03 0.67 6.66 -51.93 -0.35 0.33 16 47 H 0.01 0.25 8.14 -51.93 -0.42 -0.18 16 48 H 0.09 2.48 6.07 -51.93 -0.32 2.17 16 49 H 0.26 7.15 8.31 -40.82 -0.34 6.82 16 50 H 0.12 1.18 8.06 -52.49 -0.42 0.75 16 51 H 0.12 0.99 8.06 -52.49 -0.42 0.57 16 LS Contribution 408.72 15.07 6.16 6.16 Total: -1.00 -32.04 408.72 -10.52 -42.55 By element: Atomic # 1 Polarization: 9.62 SS G_CDS: -9.20 Total: 0.42 kcal Atomic # 6 Polarization: -10.68 SS G_CDS: -2.69 Total: -13.37 kcal Atomic # 7 Polarization: -38.32 SS G_CDS: 0.15 Total: -38.17 kcal Atomic # 8 Polarization: -13.93 SS G_CDS: 0.09 Total: -13.85 kcal Atomic # 14 Polarization: 21.28 SS G_CDS: -5.02 Total: 16.25 kcal Total LS contribution 6.16 Total: 6.16 kcal Total: -32.04 -10.52 -42.55 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592761710.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.616 kcal (2) G-P(sol) polarization free energy of solvation -32.036 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.652 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.518 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.553 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.170 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds