Wall clock time and date at job start Tue Mar 31 2020 12:05:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.52991 * 109.47240 * 2 1 4 4 C 1.50701 * 109.47325 * 179.97438 * 3 2 1 5 5 C 1.38243 * 119.99813 * 89.99831 * 4 3 2 6 6 C 1.38225 * 119.99809 * 179.97438 * 5 4 3 7 7 C 1.38236 * 120.00262 * 0.02562 * 6 5 4 8 8 C 1.50701 * 120.00259 * 179.97438 * 7 6 5 9 9 C 1.53003 * 109.47171 * 89.99598 * 8 7 6 10 10 C 1.53000 * 109.47194 * 179.97438 * 9 8 7 11 11 C 1.50699 * 109.47242 * 179.97438 * 10 9 8 12 12 O 1.21280 * 119.99799 * 0.02562 * 11 10 9 13 13 N 1.34781 * 119.99910 * 180.02562 * 11 10 9 14 14 C 1.46497 * 120.00033 * 0.02562 * 13 11 10 15 15 C 1.46497 * 119.99894 * 180.02562 * 13 11 10 16 16 H 1.09007 * 109.47078 * 359.97438 * 15 13 11 17 17 C 1.53000 * 109.47021 * 240.00308 * 15 13 11 18 18 C 1.50694 * 109.47115 * 120.00089 * 15 13 11 19 19 H 1.08000 * 120.00563 * 359.97438 * 18 15 13 20 20 C 1.37885 * 119.99902 * 180.02562 * 18 15 13 21 21 N 1.31516 * 119.99913 * 359.97438 * 20 18 15 22 22 Si 1.86798 * 119.99766 * 179.97438 * 20 18 15 23 23 H 1.48500 * 109.47353 * 269.99586 * 22 20 18 24 24 H 1.48501 * 109.47293 * 30.00037 * 22 20 18 25 25 H 1.48504 * 109.46680 * 149.99835 * 22 20 18 26 26 C 1.38236 * 119.99829 * 0.25265 * 7 6 5 27 27 C 1.38232 * 120.00155 * 270.02139 * 4 3 2 28 28 H 1.09000 * 109.46994 * 59.99927 * 1 2 3 29 29 H 1.08997 * 109.46904 * 180.02562 * 1 2 3 30 30 H 1.09009 * 109.46696 * 300.00138 * 1 2 3 31 31 H 1.08996 * 109.46703 * 239.99465 * 2 1 3 32 32 H 1.09000 * 109.46994 * 120.00072 * 2 1 3 33 33 H 1.09005 * 109.47558 * 59.99808 * 3 2 1 34 34 H 1.09000 * 109.47187 * 299.99954 * 3 2 1 35 35 H 1.08004 * 119.99996 * 359.97438 * 5 4 3 36 36 H 1.08001 * 119.99895 * 179.97438 * 6 5 4 37 37 H 1.09005 * 109.46952 * 330.00111 * 8 7 6 38 38 H 1.09000 * 109.46957 * 209.99980 * 8 7 6 39 39 H 1.09005 * 109.46763 * 60.00398 * 9 8 7 40 40 H 1.09000 * 109.47492 * 300.00055 * 9 8 7 41 41 H 1.09005 * 109.46782 * 60.00603 * 10 9 8 42 42 H 1.09000 * 109.47558 * 300.00769 * 10 9 8 43 43 H 1.09001 * 109.46905 * 269.99961 * 14 13 11 44 44 H 1.09005 * 109.47144 * 29.99902 * 14 13 11 45 45 H 1.08993 * 109.47302 * 150.00089 * 14 13 11 46 46 H 1.09002 * 109.47106 * 299.99878 * 17 15 13 47 47 H 1.08998 * 109.47089 * 59.99825 * 17 15 13 48 48 H 1.08995 * 109.47131 * 179.97438 * 17 15 13 49 49 H 0.97001 * 119.99646 * 179.97438 * 21 20 18 50 50 H 1.07997 * 120.00071 * 179.72838 * 26 7 6 51 51 H 1.08002 * 119.99688 * 0.02562 * 27 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 3.5471 1.4424 0.0006 5 6 4.2388 1.4422 -1.1963 6 6 5.6210 1.4428 -1.1957 7 6 6.3117 1.4430 0.0017 8 6 7.8188 1.4430 0.0023 9 6 8.3288 2.8855 0.0022 10 6 9.8588 2.8856 0.0035 11 6 10.3611 4.3064 0.0027 12 8 9.5730 5.2282 0.0017 13 7 11.6862 4.5526 0.0031 14 6 12.6382 3.4391 0.0037 15 6 12.1745 5.9338 0.0029 16 1 11.3267 6.6190 0.0020 17 6 13.0249 6.1739 -1.2462 18 6 13.0113 6.1709 1.2335 19 1 13.1639 5.3728 1.9449 20 6 13.5815 7.4073 1.4518 21 7 13.3954 8.3794 0.5858 22 14 14.6181 7.7013 2.9777 23 1 13.7492 8.1833 4.0812 24 1 15.2743 6.4322 3.3825 25 1 15.6552 8.7224 2.6822 26 6 5.6201 1.4374 1.1986 27 6 4.2378 1.4422 1.1980 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0276 0.0005 30 1 -0.3633 0.5139 0.8901 31 1 1.8933 -0.5139 -0.8899 32 1 1.8934 -0.5138 0.8900 33 1 1.6768 1.9563 0.8900 34 1 1.6768 1.9562 -0.8900 35 1 3.6991 1.4416 -2.1319 36 1 6.1614 1.4422 -2.1308 37 1 8.1825 0.9290 -0.8875 38 1 8.1817 0.9294 0.8926 39 1 7.9651 3.3995 0.8920 40 1 7.9658 3.3992 -0.8881 41 1 10.2228 2.3715 -0.8861 42 1 10.2214 2.3720 0.8939 43 1 12.8739 3.1633 1.0315 44 1 12.1980 2.5845 -0.5101 45 1 13.5509 3.7411 -0.5099 46 1 13.8727 5.4888 -1.2457 47 1 12.4196 6.0024 -2.1363 48 1 13.3879 7.2017 -1.2465 49 1 13.7962 9.2492 0.7396 50 1 6.1597 1.4331 2.1341 51 1 3.6974 1.4415 2.1331 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000592761710.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:05:05 Heat of formation + Delta-G solvation = -63.334572 kcal Electronic energy + Delta-G solvation = -25517.479237 eV Core-core repulsion = 21993.646218 eV Total energy + Delta-G solvation = -3523.833019 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 317.210 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -40.80160 -40.36238 -37.29026 -36.67492 -35.10413 -34.70580 -32.34922 -31.76976 -31.19309 -28.84312 -27.55664 -27.28031 -26.22175 -23.80476 -23.59349 -22.56060 -22.01741 -21.22178 -19.79805 -18.51621 -17.78941 -17.23682 -16.99439 -16.84539 -16.45773 -16.17572 -15.82650 -15.49878 -14.97079 -14.70766 -14.54948 -14.52389 -14.22764 -14.22110 -13.90602 -13.69414 -13.44275 -13.27896 -13.05090 -12.95735 -12.93155 -12.75296 -12.66459 -12.57260 -12.40017 -12.18498 -12.17169 -12.09787 -11.94762 -11.92968 -11.55290 -11.53788 -11.45705 -11.17897 -10.63817 -10.44778 -9.77705 -9.33425 -9.28851 -8.14866 -6.31769 0.46084 0.54716 1.40203 1.41631 1.51681 1.87929 2.34298 2.53579 2.87104 3.12600 3.78699 3.80864 3.90626 3.94836 4.08509 4.17885 4.23275 4.27533 4.35900 4.42911 4.51910 4.55952 4.64959 4.67130 4.70262 4.74866 4.77060 4.84775 4.87295 4.88718 4.89934 4.92707 5.01949 5.05338 5.10085 5.15490 5.15823 5.24727 5.31278 5.33148 5.44313 5.45816 5.46793 5.57680 5.64426 5.69203 5.76956 5.80174 6.05246 6.16790 6.18569 6.76902 6.89598 7.33726 7.53841 8.89366 Molecular weight = 317.21amu Principal moments of inertia in cm(-1) A = 0.026226 B = 0.001923 C = 0.001887 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1067.403436 B =14559.473750 C =14832.917998 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.115 4.115 3 C -0.078 4.078 4 C -0.097 4.097 5 C -0.127 4.127 6 C -0.126 4.126 7 C -0.097 4.097 8 C -0.070 4.070 9 C -0.089 4.089 10 C -0.123 4.123 11 C 0.487 3.513 12 O -0.612 6.612 13 N -0.604 5.604 14 C 0.083 3.917 15 C 0.258 3.742 16 H 0.004 0.996 17 C -0.132 4.132 18 C -0.537 4.537 19 H 0.060 0.940 20 C 0.012 3.988 21 N -0.919 5.919 22 Si 0.966 3.034 23 H -0.283 1.283 24 H -0.260 1.260 25 H -0.280 1.280 26 C -0.128 4.128 27 C -0.128 4.128 28 H 0.057 0.943 29 H 0.059 0.941 30 H 0.056 0.944 31 H 0.060 0.940 32 H 0.059 0.941 33 H 0.074 0.926 34 H 0.075 0.925 35 H 0.133 0.867 36 H 0.131 0.869 37 H 0.091 0.909 38 H 0.087 0.913 39 H 0.043 0.957 40 H 0.048 0.952 41 H 0.121 0.879 42 H 0.114 0.886 43 H 0.054 0.946 44 H 0.100 0.900 45 H 0.067 0.933 46 H 0.049 0.951 47 H 0.019 0.981 48 H 0.066 0.934 49 H 0.264 0.736 50 H 0.128 0.872 51 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.206 -21.752 -2.351 27.833 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.152 4.152 3 C -0.115 4.115 4 C -0.097 4.097 5 C -0.145 4.145 6 C -0.144 4.144 7 C -0.097 4.097 8 C -0.107 4.107 9 C -0.127 4.127 10 C -0.162 4.162 11 C 0.277 3.723 12 O -0.495 6.495 13 N -0.335 5.335 14 C -0.059 4.059 15 C 0.155 3.845 16 H 0.022 0.978 17 C -0.190 4.190 18 C -0.576 4.576 19 H 0.079 0.921 20 C -0.188 4.188 21 N -0.558 5.558 22 Si 0.791 3.209 23 H -0.209 1.209 24 H -0.184 1.184 25 H -0.205 1.205 26 C -0.146 4.146 27 C -0.146 4.146 28 H 0.076 0.924 29 H 0.078 0.922 30 H 0.075 0.925 31 H 0.078 0.922 32 H 0.077 0.923 33 H 0.092 0.908 34 H 0.094 0.906 35 H 0.151 0.849 36 H 0.149 0.851 37 H 0.109 0.891 38 H 0.106 0.894 39 H 0.062 0.938 40 H 0.067 0.933 41 H 0.139 0.861 42 H 0.132 0.868 43 H 0.073 0.927 44 H 0.118 0.882 45 H 0.086 0.914 46 H 0.068 0.932 47 H 0.038 0.962 48 H 0.084 0.916 49 H 0.073 0.927 50 H 0.146 0.854 51 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -17.518 -21.104 -2.393 27.532 hybrid contribution 0.629 1.071 0.734 1.443 sum -16.889 -20.033 -1.659 26.255 Atomic orbital electron populations 1.21784 0.94832 1.02117 1.02156 1.21469 0.96313 0.95420 1.02041 1.20647 0.89680 0.97957 1.03250 1.20144 0.96687 0.99770 0.93126 1.21255 0.94233 1.00731 0.98257 1.21289 0.94634 1.00385 0.98112 1.20094 0.96409 0.99727 0.93423 1.20587 0.90156 0.95443 1.04495 1.21191 0.93231 0.96683 1.01608 1.21721 0.96965 0.91223 1.06325 1.21681 0.82000 0.93075 0.75581 1.90616 1.56356 1.49011 1.53527 1.48292 1.06015 1.08660 1.70510 1.21827 0.93487 0.88499 1.02135 1.18515 0.92727 0.78722 0.94492 0.97760 1.21865 0.98851 1.02845 0.95462 1.21591 1.31355 0.97674 1.06955 0.92138 1.25783 0.97662 0.95600 0.99709 1.70034 1.45459 1.03280 1.37000 0.85440 0.78167 0.78360 0.78944 1.20933 1.18426 1.20508 1.21287 0.94666 1.00518 0.98146 1.21244 0.94216 1.00819 0.98287 0.92381 0.92190 0.92453 0.92167 0.92264 0.90754 0.90635 0.84885 0.85087 0.89057 0.89426 0.93823 0.93338 0.86069 0.86809 0.92708 0.88163 0.91422 0.93196 0.96186 0.91575 0.92683 0.85394 0.85056 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.48 9.91 71.98 0.71 -0.76 16 2 C -0.11 -1.40 5.92 30.59 0.18 -1.22 16 3 C -0.08 -1.10 5.34 29.85 0.16 -0.94 16 4 C -0.10 -1.82 5.13 -19.86 -0.10 -1.92 16 5 C -0.13 -2.44 9.70 22.27 0.22 -2.22 16 6 C -0.13 -2.60 9.70 22.27 0.22 -2.38 16 7 C -0.10 -2.07 5.13 -19.86 -0.10 -2.17 16 8 C -0.07 -1.31 5.35 29.85 0.16 -1.15 16 9 C -0.09 -2.38 4.49 30.60 0.14 -2.24 16 10 C -0.12 -3.22 4.25 29.85 0.13 -3.09 16 11 C 0.49 20.20 7.67 87.66 0.67 20.87 16 12 O -0.61 -32.20 15.31 -3.03 -0.05 -32.25 16 13 N -0.60 -25.76 2.75 -826.81 -2.28 -28.03 16 14 C 0.08 2.52 9.48 127.77 1.21 3.73 16 15 C 0.26 13.79 2.63 44.24 0.12 13.90 16 16 H 0.00 0.28 6.90 -2.38 -0.02 0.27 16 17 C -0.13 -6.48 8.95 71.98 0.64 -5.84 16 18 C -0.54 -29.80 8.37 25.60 0.21 -29.58 16 19 H 0.06 3.24 7.65 -2.91 -0.02 3.22 16 20 C 0.01 0.66 5.30 84.66 0.45 1.11 16 21 N -0.92 -54.05 11.32 21.45 0.24 -53.81 16 22 Si 0.97 43.66 29.54 68.60 2.03 45.69 16 23 H -0.28 -12.86 7.11 99.48 0.71 -12.15 16 24 H -0.26 -11.07 7.11 99.48 0.71 -10.37 16 25 H -0.28 -12.29 7.11 99.48 0.71 -11.58 16 26 C -0.13 -2.72 9.70 22.27 0.22 -2.50 16 27 C -0.13 -2.52 9.70 22.27 0.22 -2.30 16 28 H 0.06 0.53 8.14 -2.39 -0.02 0.51 16 29 H 0.06 0.52 8.14 -2.39 -0.02 0.50 16 30 H 0.06 0.53 8.14 -2.38 -0.02 0.51 16 31 H 0.06 0.76 8.14 -2.39 -0.02 0.74 16 32 H 0.06 0.76 8.14 -2.39 -0.02 0.74 16 33 H 0.07 0.98 8.09 -2.38 -0.02 0.96 16 34 H 0.08 0.98 8.09 -2.39 -0.02 0.96 16 35 H 0.13 2.04 8.06 -2.91 -0.02 2.01 16 36 H 0.13 2.30 8.06 -2.91 -0.02 2.28 16 37 H 0.09 1.37 8.09 -2.38 -0.02 1.35 16 38 H 0.09 1.38 8.08 -2.39 -0.02 1.36 16 39 H 0.04 1.38 8.10 -2.38 -0.02 1.36 16 40 H 0.05 1.48 8.10 -2.39 -0.02 1.46 16 41 H 0.12 2.36 7.40 -2.38 -0.02 2.34 16 42 H 0.11 2.43 8.11 -2.39 -0.02 2.41 16 43 H 0.05 1.60 8.14 -2.39 -0.02 1.58 16 44 H 0.10 2.09 6.44 -2.38 -0.02 2.07 16 45 H 0.07 2.12 6.43 -2.39 -0.02 2.11 16 46 H 0.05 2.20 6.66 -2.39 -0.02 2.19 16 47 H 0.02 0.89 8.14 -2.39 -0.02 0.87 16 48 H 0.07 3.62 6.07 -2.39 -0.01 3.61 16 49 H 0.26 14.69 8.31 -92.71 -0.77 13.92 16 50 H 0.13 2.40 8.06 -2.91 -0.02 2.38 16 51 H 0.13 2.11 8.06 -2.91 -0.02 2.09 16 Total: -1.00 -73.66 408.72 6.26 -67.40 By element: Atomic # 1 Polarization: 18.84 SS G_CDS: 0.87 Total: 19.71 kcal Atomic # 6 Polarization: -24.15 SS G_CDS: 5.45 Total: -18.71 kcal Atomic # 7 Polarization: -79.81 SS G_CDS: -2.03 Total: -81.84 kcal Atomic # 8 Polarization: -32.20 SS G_CDS: -0.05 Total: -32.25 kcal Atomic # 14 Polarization: 43.66 SS G_CDS: 2.03 Total: 45.69 kcal Total: -73.66 6.26 -67.40 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592761710.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.061 kcal (2) G-P(sol) polarization free energy of solvation -73.657 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.596 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.261 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.396 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.335 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds