Wall clock time and date at job start Tue Mar 31 2020 12:05:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52996 * 109.47453 * 2 1 4 4 C 1.50696 * 109.47787 * 180.02562 * 3 2 1 5 5 C 1.38227 * 120.00389 * 89.99095 * 4 3 2 6 6 C 1.38234 * 120.00048 * 179.97438 * 5 4 3 7 7 C 1.38230 * 120.00276 * 0.02871 * 6 5 4 8 8 C 1.50706 * 120.00315 * 179.97438 * 7 6 5 9 9 C 1.52999 * 109.46957 * 89.99880 * 8 7 6 10 10 C 1.53006 * 109.46626 * 180.02562 * 9 8 7 11 11 C 1.50699 * 109.46866 * 179.97438 * 10 9 8 12 12 O 1.21282 * 120.00041 * 359.97438 * 11 10 9 13 13 N 1.34779 * 120.00037 * 180.02562 * 11 10 9 14 14 C 1.46500 * 120.00169 * 180.02562 * 13 11 10 15 15 H 1.09005 * 109.47029 * 325.00028 * 14 13 11 16 16 C 1.50691 * 109.47197 * 204.99686 * 14 13 11 17 17 H 1.07999 * 119.99884 * 359.97438 * 16 14 13 18 18 C 1.37878 * 120.00042 * 179.97438 * 16 14 13 19 19 N 1.31511 * 120.00181 * 180.02562 * 18 16 14 20 20 Si 1.86804 * 119.99978 * 0.02562 * 18 16 14 21 21 H 1.48498 * 109.47038 * 89.99901 * 20 18 16 22 22 H 1.48502 * 109.46851 * 209.99896 * 20 18 16 23 23 H 1.48501 * 109.46891 * 329.99746 * 20 18 16 24 24 C 1.53005 * 109.47006 * 84.99489 * 14 13 11 25 25 C 1.52998 * 109.47440 * 295.00322 * 24 14 13 26 26 C 1.38242 * 119.99876 * 0.24898 * 7 6 5 27 27 C 1.38233 * 119.99470 * 359.49254 * 26 7 6 28 28 H 1.09000 * 109.47054 * 60.00294 * 1 2 3 29 29 H 1.09001 * 109.46993 * 180.02562 * 1 2 3 30 30 H 1.09004 * 109.47298 * 300.00170 * 1 2 3 31 31 H 1.08996 * 109.47452 * 239.99546 * 2 1 3 32 32 H 1.09000 * 109.47054 * 119.99706 * 2 1 3 33 33 H 1.09001 * 109.47595 * 59.99204 * 3 2 1 34 34 H 1.09000 * 109.46751 * 299.99892 * 3 2 1 35 35 H 1.08006 * 120.00239 * 0.02562 * 5 4 3 36 36 H 1.08003 * 120.00104 * 180.02562 * 6 5 4 37 37 H 1.08993 * 109.46700 * 329.99361 * 8 7 6 38 38 H 1.09000 * 109.46974 * 209.99735 * 8 7 6 39 39 H 1.08993 * 109.47839 * 60.00178 * 9 8 7 40 40 H 1.09000 * 109.47160 * 299.99740 * 9 8 7 41 41 H 1.09000 * 109.47050 * 299.99699 * 10 9 8 42 42 H 1.09001 * 109.46801 * 59.99811 * 10 9 8 43 43 H 0.96996 * 119.99844 * 359.97438 * 13 11 10 44 44 H 0.96998 * 120.00986 * 179.97438 * 19 18 16 45 45 H 1.09003 * 109.46891 * 55.00305 * 24 14 13 46 46 H 1.09003 * 109.46788 * 174.99945 * 24 14 13 47 47 H 1.08996 * 109.47347 * 180.02562 * 25 24 14 48 48 H 1.09003 * 109.47065 * 299.99877 * 25 24 14 49 49 H 1.09003 * 109.47234 * 59.99507 * 25 24 14 50 50 H 1.07997 * 119.99874 * 179.73273 * 26 7 6 51 51 H 1.08003 * 119.99857 * 180.25131 * 27 26 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 3.5470 1.4425 -0.0006 5 6 4.2377 1.4426 -1.1980 6 6 5.6200 1.4432 -1.1985 7 6 6.3117 1.4432 -0.0016 8 6 7.8187 1.4432 -0.0022 9 6 8.3286 2.8858 -0.0023 10 6 9.8587 2.8858 -0.0035 11 6 10.3609 4.3066 -0.0043 12 8 9.5728 5.2284 -0.0044 13 7 11.6860 4.5529 -0.0059 14 6 12.1743 5.9342 -0.0061 15 1 11.5010 6.5575 -0.5945 16 6 13.5550 5.9788 -0.6082 17 1 14.0222 5.0692 -0.9556 18 6 14.2218 7.1808 -0.7156 19 7 15.4265 7.2199 -1.2416 20 14 13.4139 8.7540 -0.1141 21 1 13.7597 8.9736 1.3132 22 1 13.8997 9.9006 -0.9232 23 1 11.9400 8.6385 -0.2543 24 6 12.2275 6.4565 1.4310 25 6 10.8092 6.5286 2.0003 26 6 5.6210 1.4373 1.1958 27 6 4.2386 1.4421 1.1963 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3634 0.5139 0.8900 31 1 1.8933 -0.5139 -0.8899 32 1 1.8933 -0.5138 0.8900 33 1 1.6767 1.9564 0.8899 34 1 1.6767 1.9562 -0.8900 35 1 3.6974 1.4429 -2.1332 36 1 6.1597 1.4436 -2.1340 37 1 8.1817 0.9294 -0.8922 38 1 8.1824 0.9294 0.8877 39 1 7.9657 3.3996 0.8877 40 1 7.9650 3.3996 -0.8922 41 1 10.2227 2.3718 0.8861 42 1 10.2213 2.3721 -0.8939 43 1 12.3164 3.8157 -0.0062 44 1 15.8955 8.0655 -1.3175 45 1 12.8298 5.7827 2.0404 46 1 12.6736 7.4510 1.4399 47 1 10.8471 6.9011 3.0240 48 1 10.2069 7.2024 1.3909 49 1 10.3631 5.5341 1.9914 50 1 6.1613 1.4329 2.1309 51 1 3.6989 1.4417 2.1318 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000592790614.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:05:08 Heat of formation + Delta-G solvation = -53.485940 kcal Electronic energy + Delta-G solvation = -25561.863813 eV Core-core repulsion = 22038.457863 eV Total energy + Delta-G solvation = -3523.405950 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 317.210 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -39.79476 -39.18527 -36.18548 -35.36404 -34.13174 -32.37453 -31.73982 -31.05856 -31.03011 -28.36655 -27.33754 -25.39751 -22.93114 -22.87802 -22.40291 -21.66353 -20.57303 -20.33877 -19.49325 -17.28485 -16.37732 -16.17793 -15.79900 -15.67088 -15.38509 -15.24838 -14.77211 -14.32791 -14.01979 -13.88112 -13.77117 -13.52220 -13.27627 -13.09587 -12.83580 -12.57529 -12.47564 -12.32355 -12.02986 -11.88280 -11.70645 -11.57834 -11.42244 -11.32532 -11.23125 -11.04676 -10.94116 -10.87403 -10.84443 -10.62867 -10.56168 -9.91118 -9.54030 -9.21184 -9.04632 -9.02846 -8.73952 -8.60145 -8.01282 -6.20241 -4.22424 1.19102 1.27828 3.23859 3.32945 3.36053 3.41661 3.57612 4.04476 4.32568 4.44569 4.52902 4.70202 4.73290 4.75087 4.88239 5.00166 5.09143 5.13361 5.17527 5.19243 5.26595 5.34155 5.42196 5.42564 5.46962 5.57966 5.60887 5.68120 5.73077 5.76485 5.81985 5.91470 5.94117 5.98111 6.00179 6.04214 6.18648 6.21035 6.29790 6.41619 6.46190 6.55326 6.67669 6.72059 6.87509 6.88805 6.98274 7.30126 7.34929 7.55297 8.18737 8.57844 8.77706 9.02269 9.41311 10.91840 Molecular weight = 317.21amu Principal moments of inertia in cm(-1) A = 0.030530 B = 0.001938 C = 0.001906 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 916.901522 B =14442.866583 C =14683.819813 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.119 4.119 3 C -0.080 4.080 4 C -0.091 4.091 5 C -0.116 4.116 6 C -0.114 4.114 7 C -0.079 4.079 8 C -0.083 4.083 9 C -0.095 4.095 10 C -0.143 4.143 11 C 0.500 3.500 12 O -0.552 6.552 13 N -0.704 5.704 14 C 0.241 3.759 15 H 0.048 0.952 16 C -0.535 4.535 17 H 0.079 0.921 18 C 0.078 3.922 19 N -0.893 5.893 20 Si 0.883 3.117 21 H -0.276 1.276 22 H -0.294 1.294 23 H -0.260 1.260 24 C -0.138 4.138 25 C -0.143 4.143 26 C -0.114 4.114 27 C -0.116 4.116 28 H 0.054 0.946 29 H 0.054 0.946 30 H 0.054 0.946 31 H 0.062 0.938 32 H 0.062 0.938 33 H 0.070 0.930 34 H 0.070 0.930 35 H 0.118 0.882 36 H 0.121 0.879 37 H 0.072 0.928 38 H 0.071 0.929 39 H 0.069 0.931 40 H 0.070 0.930 41 H 0.087 0.913 42 H 0.088 0.912 43 H 0.394 0.606 44 H 0.267 0.733 45 H 0.057 0.943 46 H 0.053 0.947 47 H 0.030 0.970 48 H 0.052 0.948 49 H 0.052 0.948 50 H 0.121 0.879 51 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.726 -16.010 3.861 28.882 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.156 4.156 3 C -0.118 4.118 4 C -0.091 4.091 5 C -0.134 4.134 6 C -0.132 4.132 7 C -0.079 4.079 8 C -0.120 4.120 9 C -0.133 4.133 10 C -0.183 4.183 11 C 0.286 3.714 12 O -0.431 6.431 13 N -0.352 5.352 14 C 0.138 3.862 15 H 0.066 0.934 16 C -0.573 4.573 17 H 0.097 0.903 18 C -0.125 4.125 19 N -0.530 5.530 20 Si 0.713 3.287 21 H -0.203 1.203 22 H -0.222 1.222 23 H -0.185 1.185 24 C -0.177 4.177 25 C -0.200 4.200 26 C -0.132 4.132 27 C -0.134 4.134 28 H 0.073 0.927 29 H 0.073 0.927 30 H 0.073 0.927 31 H 0.081 0.919 32 H 0.081 0.919 33 H 0.089 0.911 34 H 0.089 0.911 35 H 0.136 0.864 36 H 0.139 0.861 37 H 0.091 0.909 38 H 0.090 0.910 39 H 0.088 0.912 40 H 0.089 0.911 41 H 0.105 0.895 42 H 0.107 0.893 43 H 0.227 0.773 44 H 0.077 0.923 45 H 0.076 0.924 46 H 0.071 0.929 47 H 0.049 0.951 48 H 0.071 0.929 49 H 0.071 0.929 50 H 0.139 0.861 51 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -24.111 -15.217 3.798 28.763 hybrid contribution 0.215 0.583 0.338 0.708 sum -23.895 -14.634 4.136 28.324 Atomic orbital electron populations 1.21795 0.95741 1.01670 1.01860 1.21509 0.95577 0.96171 1.02356 1.20622 0.91058 0.97259 1.02811 1.19846 0.95492 1.00531 0.93274 1.20993 0.94168 1.00830 0.97416 1.21058 0.94090 1.00293 0.97748 1.19913 0.95832 0.99021 0.93116 1.20677 0.90654 0.97795 1.02866 1.21272 0.93251 0.94869 1.03868 1.21704 0.97262 0.95446 1.03882 1.20505 0.83147 0.90936 0.76847 1.90662 1.55544 1.46319 1.50621 1.46195 1.05835 1.10449 1.72684 1.19121 0.95667 0.79176 0.92257 0.93432 1.21069 0.98723 0.96147 1.41314 0.90256 1.24840 0.94535 0.98847 0.94329 1.69866 1.12222 1.26805 1.44080 0.86899 0.80846 0.82776 0.78183 1.20275 1.22183 1.18487 1.22281 0.95568 1.00515 0.99311 1.21869 0.97863 1.01782 0.98515 1.21049 0.94088 1.00395 0.97698 1.20989 0.94157 1.00882 0.97407 0.92694 0.92713 0.92709 0.91897 0.91912 0.91136 0.91132 0.86354 0.86063 0.90943 0.91003 0.91193 0.91114 0.89490 0.89338 0.77288 0.92321 0.92377 0.92883 0.95076 0.92927 0.92895 0.86119 0.86381 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.81 9.91 37.16 0.37 -0.44 16 2 C -0.12 -0.75 5.92 -26.73 -0.16 -0.91 16 3 C -0.08 -0.57 5.34 -27.89 -0.15 -0.72 16 4 C -0.09 -0.84 5.13 -104.63 -0.54 -1.38 16 5 C -0.12 -1.11 9.70 -39.59 -0.38 -1.49 16 6 C -0.11 -1.16 9.70 -39.59 -0.38 -1.55 16 7 C -0.08 -0.83 5.13 -104.62 -0.54 -1.36 16 8 C -0.08 -0.80 5.35 -27.88 -0.15 -0.95 16 9 C -0.09 -1.17 4.49 -26.73 -0.12 -1.29 16 10 C -0.14 -1.80 5.70 -27.88 -0.16 -1.96 16 11 C 0.50 9.05 6.40 -10.99 -0.07 8.98 16 12 O -0.55 -11.94 13.13 5.56 0.07 -11.87 16 13 N -0.70 -13.71 5.02 -54.93 -0.28 -13.98 16 14 C 0.24 5.74 1.83 -69.08 -0.13 5.61 16 15 H 0.05 1.26 6.63 -51.93 -0.34 0.92 16 16 C -0.53 -14.47 9.31 -34.44 -0.32 -14.80 16 17 H 0.08 2.25 7.98 -52.49 -0.42 1.83 16 18 C 0.08 2.20 5.45 -17.82 -0.10 2.10 16 19 N -0.89 -26.52 13.96 55.43 0.77 -25.74 16 20 Si 0.88 21.95 24.41 -169.99 -4.15 17.80 16 21 H -0.28 -6.65 6.83 56.52 0.39 -6.26 16 22 H -0.29 -7.29 7.11 56.52 0.40 -6.88 16 23 H -0.26 -6.44 6.53 56.52 0.37 -6.08 16 24 C -0.14 -3.09 5.11 -26.73 -0.14 -3.23 16 25 C -0.14 -2.91 8.52 37.16 0.32 -2.60 16 26 C -0.11 -1.15 9.70 -39.58 -0.38 -1.54 16 27 C -0.12 -1.10 9.70 -39.58 -0.38 -1.49 16 28 H 0.05 0.28 8.14 -51.93 -0.42 -0.15 16 29 H 0.05 0.26 8.14 -51.93 -0.42 -0.16 16 30 H 0.05 0.27 8.14 -51.93 -0.42 -0.15 16 31 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 32 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 33 H 0.07 0.47 8.09 -51.93 -0.42 0.05 16 34 H 0.07 0.47 8.08 -51.93 -0.42 0.05 16 35 H 0.12 0.93 8.06 -52.48 -0.42 0.51 16 36 H 0.12 1.09 8.06 -52.48 -0.42 0.67 16 37 H 0.07 0.63 8.08 -51.93 -0.42 0.21 16 38 H 0.07 0.61 8.08 -51.93 -0.42 0.19 16 39 H 0.07 0.96 8.10 -51.93 -0.42 0.54 16 40 H 0.07 0.98 8.10 -51.93 -0.42 0.56 16 41 H 0.09 0.92 8.14 -51.93 -0.42 0.50 16 42 H 0.09 0.97 8.14 -51.93 -0.42 0.55 16 43 H 0.39 6.74 8.54 -40.82 -0.35 6.39 16 44 H 0.27 7.46 8.31 -40.82 -0.34 7.12 16 45 H 0.06 1.24 8.14 -51.93 -0.42 0.81 16 46 H 0.05 1.25 3.22 -51.93 -0.17 1.09 16 47 H 0.03 0.55 8.14 -51.93 -0.42 0.13 16 48 H 0.05 1.14 7.85 -51.93 -0.41 0.73 16 49 H 0.05 1.04 5.65 -51.93 -0.29 0.75 16 50 H 0.12 1.06 8.06 -52.49 -0.42 0.64 16 51 H 0.12 0.91 8.06 -52.48 -0.42 0.49 16 LS Contribution 401.59 15.07 6.05 6.05 Total: -1.00 -31.58 401.59 -10.12 -41.70 By element: Atomic # 1 Polarization: 14.21 SS G_CDS: -9.18 Total: 5.03 kcal Atomic # 6 Polarization: -15.58 SS G_CDS: -3.41 Total: -18.99 kcal Atomic # 7 Polarization: -40.22 SS G_CDS: 0.50 Total: -39.73 kcal Atomic # 8 Polarization: -11.94 SS G_CDS: 0.07 Total: -11.87 kcal Atomic # 14 Polarization: 21.95 SS G_CDS: -4.15 Total: 17.80 kcal Total LS contribution 6.05 Total: 6.05 kcal Total: -31.58 -10.12 -41.70 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592790614.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.785 kcal (2) G-P(sol) polarization free energy of solvation -31.582 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.367 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.119 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.701 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.486 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds