Wall clock time and date at job start Tue Mar 31 2020 12:05:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52998 * 109.47134 * 2 1 4 4 C 1.50703 * 109.47480 * 180.02562 * 3 2 1 5 5 C 1.38226 * 120.00089 * 89.99320 * 4 3 2 6 6 C 1.38240 * 120.00007 * 179.97438 * 5 4 3 7 7 C 1.38232 * 119.99767 * 0.02562 * 6 5 4 8 8 C 1.50700 * 120.00047 * 179.97438 * 7 6 5 9 9 C 1.52995 * 109.47157 * 89.99946 * 8 7 6 10 10 C 1.53004 * 109.47165 * 180.02562 * 9 8 7 11 11 C 1.50699 * 109.47380 * 180.02562 * 10 9 8 12 12 O 1.21279 * 119.99633 * 359.97438 * 11 10 9 13 13 N 1.34774 * 120.00213 * 179.97438 * 11 10 9 14 14 C 1.46499 * 120.00201 * 179.97438 * 13 11 10 15 15 H 1.08998 * 109.46988 * 34.99736 * 14 13 11 16 16 C 1.50694 * 109.47399 * 155.00028 * 14 13 11 17 17 H 1.08004 * 119.99742 * 5.60374 * 16 14 13 18 18 C 1.37879 * 120.00562 * 185.60725 * 16 14 13 19 19 N 1.31505 * 120.00295 * 196.28743 * 18 16 14 20 20 Si 1.86803 * 119.99620 * 16.28391 * 18 16 14 21 21 H 1.48499 * 109.46999 * 180.02562 * 20 18 16 22 22 H 1.48506 * 109.47178 * 300.00153 * 20 18 16 23 23 H 1.48500 * 109.47146 * 59.99948 * 20 18 16 24 24 C 1.53004 * 109.46998 * 275.00234 * 14 13 11 25 25 C 1.52993 * 109.47275 * 65.55420 * 24 14 13 26 26 C 1.38237 * 120.00282 * 0.25472 * 7 6 5 27 27 C 1.38232 * 119.99534 * 270.02180 * 4 3 2 28 28 H 1.09000 * 109.46727 * 180.02562 * 1 2 3 29 29 H 1.08998 * 109.46942 * 300.00146 * 1 2 3 30 30 H 1.08998 * 109.46734 * 60.00265 * 1 2 3 31 31 H 1.08999 * 109.47455 * 239.99744 * 2 1 3 32 32 H 1.09004 * 109.47155 * 119.99676 * 2 1 3 33 33 H 1.09003 * 109.47616 * 59.99422 * 3 2 1 34 34 H 1.09004 * 109.46835 * 299.99872 * 3 2 1 35 35 H 1.08001 * 120.00358 * 0.02562 * 5 4 3 36 36 H 1.08002 * 119.99798 * 180.02562 * 6 5 4 37 37 H 1.08999 * 109.47025 * 329.99851 * 8 7 6 38 38 H 1.09004 * 109.47220 * 210.00006 * 8 7 6 39 39 H 1.08999 * 109.47231 * 60.00030 * 9 8 7 40 40 H 1.08998 * 109.47363 * 299.99773 * 9 8 7 41 41 H 1.08999 * 109.47279 * 59.99744 * 10 9 8 42 42 H 1.09004 * 109.46958 * 299.99904 * 10 9 8 43 43 H 0.97002 * 120.00207 * 359.97438 * 13 11 10 44 44 H 0.96998 * 120.00193 * 354.82844 * 19 18 16 45 45 H 1.09008 * 109.46623 * 185.55098 * 24 14 13 46 46 H 1.09000 * 109.47106 * 305.54814 * 24 14 13 47 47 H 1.09008 * 109.47032 * 299.99427 * 25 24 14 48 48 H 1.09000 * 109.47548 * 59.99665 * 25 24 14 49 49 H 1.09001 * 109.47148 * 180.02562 * 25 24 14 50 50 H 1.07994 * 120.00315 * 179.72795 * 26 7 6 51 51 H 1.08004 * 120.00503 * 359.97438 * 27 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5471 1.4426 -0.0006 5 6 4.2377 1.4426 -1.1980 6 6 5.6201 1.4433 -1.1986 7 6 6.3117 1.4433 -0.0017 8 6 7.8187 1.4434 -0.0022 9 6 8.3286 2.8858 -0.0024 10 6 9.8586 2.8859 -0.0036 11 6 10.3609 4.3067 -0.0031 12 8 9.5728 5.2285 -0.0024 13 7 11.6860 4.5531 -0.0034 14 6 12.1743 5.9343 -0.0035 15 1 11.5019 6.5574 0.5861 16 6 13.5559 5.9788 0.5965 17 1 14.0600 5.0606 0.8599 18 6 14.1765 7.1914 0.8094 19 7 15.4731 7.2380 1.0236 20 14 13.1753 8.7684 0.7935 21 1 14.0709 9.9259 1.0452 22 1 12.5225 8.9270 -0.5309 23 1 12.1366 8.7060 1.8530 24 6 12.2253 6.4571 -1.4406 25 6 10.8050 6.5426 -2.0029 26 6 5.6210 1.4373 1.1958 27 6 4.2386 1.4420 1.1963 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 1.8934 -0.5139 -0.8899 32 1 1.8934 -0.5138 0.8900 33 1 1.6766 1.9564 0.8899 34 1 1.6767 1.9563 -0.8900 35 1 3.6974 1.4431 -2.1331 36 1 6.1597 1.4437 -2.1341 37 1 8.1817 0.9296 -0.8923 38 1 8.1824 0.9295 0.8876 39 1 7.9656 3.3996 0.8877 40 1 7.9650 3.3997 -0.8922 41 1 10.2213 2.3722 -0.8939 42 1 10.2227 2.3720 0.8861 43 1 12.3164 3.8159 -0.0036 44 1 15.9808 6.4156 1.1065 45 1 12.6804 7.4476 -1.4509 46 1 12.8185 5.7783 -2.0533 47 1 10.3499 5.5521 -1.9926 48 1 10.2118 7.2213 -1.3902 49 1 10.8414 6.9146 -3.0268 50 1 6.1613 1.4329 2.1308 51 1 3.6990 1.4419 2.1318 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000592790615.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:05:11 Heat of formation + Delta-G solvation = -61.252160 kcal Electronic energy + Delta-G solvation = -25557.081293 eV Core-core repulsion = 22033.338574 eV Total energy + Delta-G solvation = -3523.742719 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 317.210 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -39.80042 -39.16846 -36.18039 -35.30780 -34.13550 -32.42048 -31.71275 -31.06519 -30.99374 -28.33769 -27.09707 -25.35460 -22.88547 -22.76850 -22.23016 -21.64895 -20.55018 -20.20589 -19.45619 -17.76934 -16.53466 -16.18150 -15.97864 -15.58585 -15.39263 -15.12612 -14.76807 -14.13544 -14.01643 -13.79624 -13.62874 -13.49361 -13.21304 -13.08248 -12.64502 -12.53975 -12.47883 -12.37785 -12.28351 -11.92449 -11.73047 -11.50141 -11.42670 -11.32348 -11.22768 -10.95272 -10.90376 -10.84263 -10.66907 -10.59381 -10.42002 -9.87554 -9.56476 -9.13254 -9.05284 -8.98637 -8.61122 -8.33251 -8.03424 -6.57208 -4.21176 1.18417 1.27099 3.32633 3.39463 3.45100 3.56786 3.60280 4.06432 4.42276 4.44069 4.52387 4.69531 4.72614 4.74571 4.87573 4.99346 5.08629 5.16628 5.17607 5.18764 5.25657 5.33444 5.41278 5.41963 5.46570 5.56969 5.60356 5.67411 5.71564 5.75980 5.81689 5.91079 5.93389 5.98769 6.09298 6.11374 6.17796 6.28761 6.30606 6.40677 6.45548 6.54502 6.71788 6.81195 6.88041 6.98794 7.07784 7.38729 7.46265 7.68642 8.23976 8.53482 8.72649 9.05362 9.48001 10.83248 Molecular weight = 317.21amu Principal moments of inertia in cm(-1) A = 0.029024 B = 0.001950 C = 0.001926 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 964.498270 B =14357.109493 C =14537.016338 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.119 4.119 3 C -0.080 4.080 4 C -0.091 4.091 5 C -0.116 4.116 6 C -0.114 4.114 7 C -0.079 4.079 8 C -0.083 4.083 9 C -0.094 4.094 10 C -0.143 4.143 11 C 0.499 3.501 12 O -0.552 6.552 13 N -0.704 5.704 14 C 0.246 3.754 15 H 0.040 0.960 16 C -0.616 4.616 17 H 0.060 0.940 18 C 0.038 3.962 19 N -0.899 5.899 20 Si 1.040 2.960 21 H -0.284 1.284 22 H -0.269 1.269 23 H -0.280 1.280 24 C -0.139 4.139 25 C -0.143 4.143 26 C -0.114 4.114 27 C -0.116 4.116 28 H 0.054 0.946 29 H 0.054 0.946 30 H 0.054 0.946 31 H 0.062 0.938 32 H 0.062 0.938 33 H 0.070 0.930 34 H 0.070 0.930 35 H 0.118 0.882 36 H 0.121 0.879 37 H 0.071 0.929 38 H 0.072 0.928 39 H 0.070 0.930 40 H 0.070 0.930 41 H 0.086 0.914 42 H 0.087 0.913 43 H 0.392 0.608 44 H 0.268 0.732 45 H 0.068 0.932 46 H 0.049 0.951 47 H 0.048 0.952 48 H 0.050 0.950 49 H 0.029 0.971 50 H 0.121 0.879 51 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.005 -16.091 -3.246 29.080 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.156 4.156 3 C -0.118 4.118 4 C -0.091 4.091 5 C -0.134 4.134 6 C -0.132 4.132 7 C -0.079 4.079 8 C -0.120 4.120 9 C -0.132 4.132 10 C -0.183 4.183 11 C 0.284 3.716 12 O -0.432 6.432 13 N -0.352 5.352 14 C 0.142 3.858 15 H 0.058 0.942 16 C -0.654 4.654 17 H 0.079 0.921 18 C -0.168 4.168 19 N -0.532 5.532 20 Si 0.868 3.132 21 H -0.210 1.210 22 H -0.195 1.195 23 H -0.206 1.206 24 C -0.178 4.178 25 C -0.200 4.200 26 C -0.132 4.132 27 C -0.134 4.134 28 H 0.073 0.927 29 H 0.073 0.927 30 H 0.073 0.927 31 H 0.081 0.919 32 H 0.081 0.919 33 H 0.089 0.911 34 H 0.089 0.911 35 H 0.136 0.864 36 H 0.139 0.861 37 H 0.090 0.910 38 H 0.090 0.910 39 H 0.089 0.911 40 H 0.088 0.912 41 H 0.104 0.896 42 H 0.105 0.895 43 H 0.224 0.776 44 H 0.078 0.922 45 H 0.086 0.914 46 H 0.068 0.932 47 H 0.067 0.933 48 H 0.069 0.931 49 H 0.048 0.952 50 H 0.139 0.861 51 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -24.400 -13.757 -3.133 28.186 hybrid contribution 0.374 -2.113 -0.084 2.147 sum -24.026 -15.870 -3.217 28.973 Atomic orbital electron populations 1.21795 0.95733 1.01672 1.01865 1.21511 0.95585 0.96169 1.02351 1.20625 0.91044 0.97261 1.02821 1.19847 0.95501 1.00513 0.93267 1.20988 0.94152 1.00870 0.97411 1.21048 0.94090 1.00383 0.97699 1.19906 0.95806 0.99044 0.93130 1.20676 0.90687 0.97795 1.02833 1.21269 0.93213 0.94867 1.03881 1.21706 0.97310 0.95543 1.03759 1.20511 0.83236 0.90901 0.76925 1.90655 1.55516 1.46304 1.50701 1.46276 1.05721 1.10636 1.72583 1.19019 0.95256 0.78882 0.92596 0.94193 1.22108 1.00661 0.95518 1.47122 0.92140 1.25678 0.96184 1.01909 0.93029 1.70875 1.05585 1.31418 1.45372 0.84111 0.75415 0.75759 0.77888 1.20953 1.19506 1.20644 1.22355 0.95133 1.01589 0.98686 1.21878 0.98174 1.01461 0.98491 1.21059 0.94104 1.00317 0.97721 1.20996 0.94151 1.00824 0.97428 0.92712 0.92695 0.92697 0.91912 0.91905 0.91115 0.91133 0.86364 0.86119 0.91021 0.90983 0.91109 0.91167 0.89572 0.89477 0.77562 0.92162 0.91396 0.93175 0.93264 0.93068 0.95182 0.86085 0.86346 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.81 9.91 37.16 0.37 -0.44 16 2 C -0.12 -0.75 5.92 -26.73 -0.16 -0.91 16 3 C -0.08 -0.57 5.34 -27.88 -0.15 -0.72 16 4 C -0.09 -0.85 5.13 -104.63 -0.54 -1.38 16 5 C -0.12 -1.11 9.70 -39.58 -0.38 -1.49 16 6 C -0.11 -1.16 9.70 -39.58 -0.38 -1.55 16 7 C -0.08 -0.84 5.13 -104.62 -0.54 -1.37 16 8 C -0.08 -0.81 5.35 -27.89 -0.15 -0.96 16 9 C -0.09 -1.18 4.49 -26.73 -0.12 -1.30 16 10 C -0.14 -1.85 5.70 -27.88 -0.16 -2.01 16 11 C 0.50 9.22 6.42 -10.99 -0.07 9.15 16 12 O -0.55 -12.07 13.12 5.56 0.07 -12.00 16 13 N -0.70 -14.07 5.03 -54.94 -0.28 -14.35 16 14 C 0.25 5.90 1.82 -69.08 -0.13 5.78 16 15 H 0.04 1.05 6.25 -51.93 -0.32 0.73 16 16 C -0.62 -16.72 9.01 -34.44 -0.31 -17.03 16 17 H 0.06 1.71 7.96 -52.48 -0.42 1.29 16 18 C 0.04 1.09 5.32 -17.82 -0.09 0.99 16 19 N -0.90 -26.87 13.69 55.43 0.76 -26.11 16 20 Si 1.04 25.34 26.27 -169.99 -4.47 20.88 16 21 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 22 H -0.27 -6.14 5.67 56.52 0.32 -5.82 16 23 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 24 C -0.14 -3.14 5.28 -26.73 -0.14 -3.28 16 25 C -0.14 -2.93 8.53 37.15 0.32 -2.61 16 26 C -0.11 -1.17 9.70 -39.58 -0.38 -1.56 16 27 C -0.12 -1.11 9.70 -39.58 -0.38 -1.50 16 28 H 0.05 0.26 8.14 -51.93 -0.42 -0.16 16 29 H 0.05 0.28 8.14 -51.93 -0.42 -0.15 16 30 H 0.05 0.27 8.14 -51.93 -0.42 -0.15 16 31 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 32 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 33 H 0.07 0.47 8.09 -51.93 -0.42 0.05 16 34 H 0.07 0.47 8.09 -51.93 -0.42 0.05 16 35 H 0.12 0.92 8.06 -52.49 -0.42 0.50 16 36 H 0.12 1.07 8.06 -52.49 -0.42 0.65 16 37 H 0.07 0.63 8.09 -51.93 -0.42 0.21 16 38 H 0.07 0.64 8.08 -51.93 -0.42 0.22 16 39 H 0.07 1.00 8.10 -51.93 -0.42 0.58 16 40 H 0.07 0.97 8.10 -51.93 -0.42 0.55 16 41 H 0.09 0.95 8.14 -51.93 -0.42 0.52 16 42 H 0.09 0.99 8.14 -51.93 -0.42 0.57 16 43 H 0.39 6.96 8.53 -40.82 -0.35 6.61 16 44 H 0.27 7.92 8.73 -40.82 -0.36 7.57 16 45 H 0.07 1.61 4.74 -51.92 -0.25 1.36 16 46 H 0.05 1.10 8.14 -51.93 -0.42 0.67 16 47 H 0.05 0.99 5.63 -51.92 -0.29 0.70 16 48 H 0.05 1.10 7.88 -51.93 -0.41 0.69 16 49 H 0.03 0.54 8.14 -51.93 -0.42 0.12 16 50 H 0.12 1.10 8.06 -52.49 -0.42 0.67 16 51 H 0.12 0.93 8.06 -52.48 -0.42 0.51 16 LS Contribution 403.92 15.07 6.09 6.09 Total: -1.00 -31.42 403.92 -10.51 -41.93 By element: Atomic # 1 Polarization: 15.05 SS G_CDS: -9.29 Total: 5.76 kcal Atomic # 6 Polarization: -18.80 SS G_CDS: -3.40 Total: -22.20 kcal Atomic # 7 Polarization: -40.94 SS G_CDS: 0.48 Total: -40.46 kcal Atomic # 8 Polarization: -12.07 SS G_CDS: 0.07 Total: -12.00 kcal Atomic # 14 Polarization: 25.34 SS G_CDS: -4.47 Total: 20.88 kcal Total LS contribution 6.09 Total: 6.09 kcal Total: -31.42 -10.51 -41.93 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592790615.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.322 kcal (2) G-P(sol) polarization free energy of solvation -31.416 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.738 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.514 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.930 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.252 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds