Wall clock time and date at job start Tue Mar 31 2020 11:33:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38132 * 120.03337 * 2 1 4 4 C 1.50693 * 119.96556 * 0.02562 * 3 2 1 5 5 O 1.42901 * 109.47368 * 180.25235 * 4 3 2 6 6 C 1.42897 * 114.00442 * 180.02562 * 5 4 3 7 7 C 1.53002 * 109.47240 * 59.99513 * 6 5 4 8 8 C 1.52993 * 109.47328 * 180.02562 * 6 5 4 9 9 C 1.53009 * 109.46488 * 300.00204 * 6 5 4 10 10 C 1.38263 * 120.06969 * 180.27502 * 3 2 1 11 11 C 1.38308 * 120.15349 * 359.74810 * 10 3 2 12 12 C 1.38086 * 120.07571 * 0.02562 * 11 10 3 13 13 C 1.38894 * 120.04112 * 179.79017 * 2 1 3 14 14 N 1.39671 * 120.07106 * 0.02562 * 13 2 1 15 15 C 1.46500 * 119.99629 * 174.25790 * 14 13 2 16 16 C 1.53003 * 109.46727 * 184.85278 * 15 14 13 17 17 C 1.50701 * 115.55304 * 81.25963 * 16 15 14 18 18 H 1.08000 * 120.00123 * 219.76014 * 17 16 15 19 19 C 1.37879 * 120.00020 * 39.75411 * 17 16 15 20 20 N 1.31518 * 119.99487 * 17.09916 * 19 17 16 21 21 Si 1.86795 * 120.00121 * 197.09788 * 19 17 16 22 22 H 1.48499 * 109.47021 * 60.00090 * 21 19 17 23 23 H 1.48497 * 109.47212 * 180.02562 * 21 19 17 24 24 H 1.48499 * 109.47147 * 300.00186 * 21 19 17 25 25 C 1.53002 * 117.49732 * 295.58480 * 16 15 14 26 26 C 1.53004 * 60.03219 * 252.50033 * 25 16 15 27 27 H 1.09000 * 109.46952 * 273.74677 * 1 2 3 28 28 H 1.08994 * 109.47545 * 33.75090 * 1 2 3 29 29 H 1.08999 * 109.46978 * 153.75335 * 1 2 3 30 30 H 1.08992 * 109.47276 * 300.25603 * 4 3 2 31 31 H 1.09002 * 109.47163 * 60.25467 * 4 3 2 32 32 H 1.08995 * 109.46744 * 60.00606 * 7 6 5 33 33 H 1.08998 * 109.46990 * 180.02562 * 7 6 5 34 34 H 1.08999 * 109.46935 * 300.00594 * 7 6 5 35 35 H 1.08999 * 109.47103 * 59.99541 * 8 6 5 36 36 H 1.08998 * 109.47302 * 179.97438 * 8 6 5 37 37 H 1.08995 * 109.47255 * 299.99761 * 8 6 5 38 38 H 1.08989 * 109.47432 * 59.99956 * 9 6 5 39 39 H 1.08998 * 109.46763 * 180.02562 * 9 6 5 40 40 H 1.09001 * 109.47009 * 299.99313 * 9 6 5 41 41 H 1.08000 * 119.92525 * 179.72383 * 10 3 2 42 42 H 1.08003 * 119.96800 * 179.97438 * 11 10 3 43 43 H 1.07993 * 120.04137 * 179.97438 * 12 11 10 44 44 H 0.96997 * 120.00285 * 354.25605 * 14 13 2 45 45 H 1.08999 * 109.47271 * 64.85251 * 15 14 13 46 46 H 1.09001 * 109.47414 * 304.84702 * 15 14 13 47 47 H 0.97005 * 119.99662 * 184.98471 * 20 19 17 48 48 H 1.08997 * 117.49868 * 0.02562 * 25 16 15 49 49 H 1.08999 * 117.49532 * 145.00399 * 25 16 15 50 50 H 1.09002 * 117.49421 * 107.50157 * 26 25 16 51 51 H 1.09000 * 117.50054 * 252.51839 * 26 25 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1984 1.1959 0.0000 4 6 1.4449 2.5009 0.0006 5 8 2.3734 3.5871 -0.0055 6 6 1.7589 4.8772 -0.0049 7 6 0.8940 5.0296 1.2480 8 6 2.8418 5.9579 -0.0122 9 6 0.8827 5.0252 -1.2505 10 6 3.5810 1.1967 -0.0057 11 6 4.2765 0.0013 -0.0062 12 6 3.5916 -1.1978 -0.0015 13 6 2.2023 -1.2024 0.0044 14 7 1.5064 -2.4133 0.0083 15 6 2.2359 -3.6778 -0.1140 16 6 1.2391 -4.8350 -0.2041 17 6 0.6413 -5.0734 -1.5668 18 1 -0.4030 -5.3321 -1.6606 19 6 1.4277 -4.9612 -2.6938 20 7 2.7382 -4.9824 -2.5859 21 14 0.6316 -4.7790 -4.3738 22 1 -0.2035 -3.5512 -4.3953 23 1 1.6871 -4.6786 -5.4135 24 1 -0.2218 -5.9629 -4.6482 25 6 0.3503 -5.0981 1.0131 26 6 1.4940 -6.0583 0.6800 27 1 -0.3633 0.0672 1.0255 28 1 -0.3634 0.8544 -0.5709 29 1 -0.3633 -0.9217 -0.4545 30 1 0.8145 2.5568 -0.8868 31 1 0.8220 2.5604 0.8931 32 1 1.5181 4.9241 2.1353 33 1 0.4249 6.0134 1.2482 34 1 0.1225 4.2595 1.2528 35 1 3.4575 5.8492 -0.9050 36 1 2.3730 6.9420 -0.0122 37 1 3.4663 5.8526 0.8748 38 1 0.1113 4.2553 -1.2457 39 1 0.4143 6.0094 -1.2503 40 1 1.4989 4.9167 -2.1431 41 1 4.1191 2.1331 -0.0102 42 1 5.3565 0.0055 -0.0112 43 1 4.1353 -2.1309 -0.0024 44 1 0.5400 -2.4171 0.0920 45 1 2.8740 -3.8150 0.7590 46 1 2.8507 -3.6570 -1.0139 47 1 3.2918 -4.8312 -3.3680 48 1 0.4754 -4.4466 1.8779 49 1 -0.6668 -5.4437 0.8283 50 1 2.3718 -6.0387 1.3260 51 1 1.2293 -7.0354 0.2758 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000594703682.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:33:44 Heat of formation + Delta-G solvation = -20.224785 kcal Electronic energy + Delta-G solvation = -27020.470603 eV Core-core repulsion = 23498.506965 eV Total energy + Delta-G solvation = -3521.963638 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 317.210 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -40.86518 -39.75467 -38.66784 -35.78421 -34.47284 -34.24034 -33.57649 -30.70052 -28.58123 -28.26008 -28.01232 -27.59528 -26.97750 -25.95305 -23.03721 -22.09430 -21.76832 -20.77077 -20.63983 -18.57278 -17.72093 -17.53721 -16.71692 -16.57471 -16.45372 -15.98498 -15.87827 -15.65724 -15.20149 -14.93038 -14.60858 -14.44247 -14.31422 -14.05893 -13.82106 -13.59925 -13.48542 -13.19476 -13.01259 -12.99788 -12.90015 -12.81283 -12.64177 -12.60700 -12.57264 -12.36836 -12.18698 -12.12006 -12.00655 -11.72796 -11.28768 -11.24865 -11.21292 -10.71194 -10.61867 -10.44381 -10.02861 -9.36334 -8.24136 -7.97808 -6.20834 0.54877 0.87013 1.38392 1.42508 1.48060 2.39853 2.58231 2.83798 3.01335 3.04162 3.64729 3.85053 3.96634 4.03712 4.10300 4.15988 4.23381 4.29544 4.37098 4.41079 4.51025 4.51889 4.67973 4.69005 4.70919 4.71698 4.79655 4.81882 4.85600 4.87328 4.91020 4.91378 4.94632 4.98553 4.99941 5.06589 5.14949 5.20600 5.23553 5.38626 5.40066 5.40577 5.52545 5.57576 5.60556 5.78078 5.80090 5.92576 6.15673 6.35130 6.44027 6.66883 6.76613 7.13390 7.40289 8.85889 Molecular weight = 317.21amu Principal moments of inertia in cm(-1) A = 0.016649 B = 0.003078 C = 0.002941 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1681.413311 B = 9095.356581 C = 9517.623747 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.103 4.103 2 C -0.179 4.179 3 C -0.050 4.050 4 C 0.110 3.890 5 O -0.388 6.388 6 C 0.097 3.903 7 C -0.177 4.177 8 C -0.136 4.136 9 C -0.178 4.178 10 C -0.172 4.172 11 C -0.081 4.081 12 C -0.219 4.219 13 C 0.212 3.788 14 N -0.726 5.726 15 C 0.166 3.834 16 C 0.015 3.985 17 C -0.506 4.506 18 H 0.054 0.946 19 C 0.035 3.965 20 N -0.892 5.892 21 Si 0.938 3.062 22 H -0.274 1.274 23 H -0.287 1.287 24 H -0.272 1.272 25 C -0.182 4.182 26 C -0.196 4.196 27 H 0.077 0.923 28 H 0.078 0.922 29 H 0.052 0.948 30 H 0.069 0.931 31 H 0.074 0.926 32 H 0.058 0.942 33 H 0.083 0.917 34 H 0.059 0.941 35 H 0.056 0.944 36 H 0.090 0.910 37 H 0.059 0.941 38 H 0.058 0.942 39 H 0.084 0.916 40 H 0.055 0.945 41 H 0.130 0.870 42 H 0.133 0.867 43 H 0.104 0.896 44 H 0.397 0.603 45 H 0.020 0.980 46 H 0.080 0.920 47 H 0.261 0.739 48 H 0.087 0.913 49 H 0.082 0.918 50 H 0.075 0.925 51 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.934 20.706 6.227 21.820 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C -0.184 4.184 3 C -0.050 4.050 4 C 0.035 3.965 5 O -0.309 6.309 6 C 0.058 3.942 7 C -0.234 4.234 8 C -0.193 4.193 9 C -0.236 4.236 10 C -0.193 4.193 11 C -0.099 4.099 12 C -0.242 4.242 13 C 0.105 3.895 14 N -0.353 5.353 15 C 0.041 3.959 16 C 0.014 3.986 17 C -0.543 4.543 18 H 0.072 0.928 19 C -0.166 4.166 20 N -0.529 5.529 21 Si 0.764 3.236 22 H -0.200 1.200 23 H -0.212 1.212 24 H -0.197 1.197 25 C -0.219 4.219 26 C -0.235 4.235 27 H 0.096 0.904 28 H 0.097 0.903 29 H 0.071 0.929 30 H 0.087 0.913 31 H 0.092 0.908 32 H 0.077 0.923 33 H 0.102 0.898 34 H 0.078 0.922 35 H 0.075 0.925 36 H 0.108 0.892 37 H 0.078 0.922 38 H 0.077 0.923 39 H 0.103 0.897 40 H 0.074 0.926 41 H 0.148 0.852 42 H 0.150 0.850 43 H 0.122 0.878 44 H 0.233 0.767 45 H 0.038 0.962 46 H 0.097 0.903 47 H 0.071 0.929 48 H 0.105 0.895 49 H 0.100 0.900 50 H 0.094 0.906 51 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -2.458 20.410 6.078 21.437 hybrid contribution -0.561 -0.678 -0.958 1.301 sum -3.019 19.732 5.120 20.608 Atomic orbital electron populations 1.20606 0.90176 1.02567 1.02581 1.19211 0.96659 0.90613 1.11873 1.19428 0.94124 0.92913 0.98579 1.21138 0.90946 0.83284 1.01175 1.87935 1.33743 1.13972 1.95211 1.21736 0.94046 0.83372 0.95036 1.22420 1.00091 1.03418 0.97473 1.21771 0.97909 0.97050 1.02563 1.22439 1.00063 1.03410 0.97662 1.20726 0.93746 0.97706 1.07075 1.21035 1.00057 0.91551 0.97296 1.20740 0.92745 0.98762 1.11996 1.17909 0.91675 0.86265 0.93604 1.44838 1.08713 1.02523 1.79241 1.20797 0.93838 0.81813 0.99413 1.19160 0.96525 0.92927 0.89988 1.20705 0.95268 1.48007 0.90321 0.92812 1.25494 0.95002 0.94383 1.01769 1.70045 1.04405 1.47337 1.31138 0.85921 0.78435 0.78805 0.80406 1.19962 1.21241 1.19676 1.22838 0.95138 1.03853 1.00078 1.22937 0.99184 0.95885 1.05455 0.90415 0.90310 0.92909 0.91306 0.90776 0.92254 0.89806 0.92191 0.92468 0.89167 0.92221 0.92282 0.89747 0.92570 0.85190 0.84958 0.87752 0.76727 0.96220 0.90270 0.92917 0.89488 0.89994 0.90633 0.91074 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -2.77 9.14 71.24 0.65 -2.12 16 2 C -0.18 -5.92 5.90 -19.73 -0.12 -6.04 16 3 C -0.05 -1.52 5.88 -19.89 -0.12 -1.63 16 4 C 0.11 2.62 4.30 71.23 0.31 2.92 16 5 O -0.39 -9.16 8.46 -148.98 -1.26 -10.42 16 6 C 0.10 1.64 1.14 -10.79 -0.01 1.62 16 7 C -0.18 -2.49 8.25 71.98 0.59 -1.89 16 8 C -0.14 -1.94 8.84 71.98 0.64 -1.30 16 9 C -0.18 -2.67 8.25 71.99 0.59 -2.08 16 10 C -0.17 -5.43 9.37 22.29 0.21 -5.22 16 11 C -0.08 -2.69 10.04 22.25 0.22 -2.47 16 12 C -0.22 -8.48 9.30 22.40 0.21 -8.27 16 13 C 0.21 8.21 6.63 38.22 0.25 8.47 16 14 N -0.73 -29.82 5.55 -339.41 -1.88 -31.70 16 15 C 0.17 7.67 4.62 86.38 0.40 8.07 16 16 C 0.01 0.70 1.71 -52.90 -0.09 0.61 16 17 C -0.51 -26.71 8.98 25.60 0.23 -26.48 16 18 H 0.05 2.83 7.87 -2.91 -0.02 2.81 16 19 C 0.03 1.85 5.11 84.65 0.43 2.29 16 20 N -0.89 -49.57 11.12 21.45 0.24 -49.33 16 21 Si 0.94 42.78 29.57 68.60 2.03 44.81 16 22 H -0.27 -12.34 7.11 99.48 0.71 -11.63 16 23 H -0.29 -13.01 7.11 99.48 0.71 -12.30 16 24 H -0.27 -12.06 7.11 99.48 0.71 -11.35 16 25 C -0.18 -7.34 9.79 30.60 0.30 -7.04 16 26 C -0.20 -8.65 9.89 30.62 0.30 -8.35 16 27 H 0.08 1.82 8.14 -2.39 -0.02 1.80 16 28 H 0.08 1.78 6.78 -2.39 -0.02 1.76 16 29 H 0.05 1.57 6.45 -2.39 -0.02 1.55 16 30 H 0.07 1.53 5.76 -2.39 -0.01 1.51 16 31 H 0.07 1.56 6.41 -2.39 -0.02 1.54 16 32 H 0.06 0.90 8.14 -2.39 -0.02 0.88 16 33 H 0.08 0.85 8.14 -2.39 -0.02 0.83 16 34 H 0.06 0.85 6.54 -2.39 -0.02 0.83 16 35 H 0.06 0.88 8.14 -2.39 -0.02 0.86 16 36 H 0.09 0.87 8.14 -2.39 -0.02 0.85 16 37 H 0.06 0.89 8.14 -2.39 -0.02 0.87 16 38 H 0.06 0.90 6.54 -2.39 -0.02 0.88 16 39 H 0.08 0.91 8.14 -2.39 -0.02 0.89 16 40 H 0.06 0.94 8.14 -2.39 -0.02 0.92 16 41 H 0.13 3.79 7.00 -2.91 -0.02 3.77 16 42 H 0.13 3.73 8.06 -2.91 -0.02 3.71 16 43 H 0.10 4.27 6.76 -2.91 -0.02 4.25 16 44 H 0.40 15.51 6.38 -92.71 -0.59 14.92 16 45 H 0.02 0.90 7.77 -2.39 -0.02 0.88 16 46 H 0.08 4.21 5.27 -2.39 -0.01 4.19 16 47 H 0.26 14.06 8.32 -92.70 -0.77 13.29 16 48 H 0.09 3.19 8.14 -2.39 -0.02 3.17 16 49 H 0.08 3.20 8.14 -2.39 -0.02 3.18 16 50 H 0.08 3.14 8.08 -2.39 -0.02 3.12 16 51 H 0.07 3.22 8.14 -2.39 -0.02 3.20 16 Total: -1.00 -58.80 396.72 4.44 -54.36 By element: Atomic # 1 Polarization: 40.87 SS G_CDS: 0.32 Total: 41.19 kcal Atomic # 6 Polarization: -53.91 SS G_CDS: 5.00 Total: -48.91 kcal Atomic # 7 Polarization: -79.38 SS G_CDS: -1.65 Total: -81.03 kcal Atomic # 8 Polarization: -9.16 SS G_CDS: -1.26 Total: -10.42 kcal Atomic # 14 Polarization: 42.78 SS G_CDS: 2.03 Total: 44.81 kcal Total: -58.80 4.44 -54.36 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594703682.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.134 kcal (2) G-P(sol) polarization free energy of solvation -58.800 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.666 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.441 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.359 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.225 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds